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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0602900-02
CDS Infomation

cds chromosome:IRGSP-1.0:11:23212506:23217465:1 gene:Os11g0602900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLOPHILIN 23 description:Peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain containing protein. (Os11t0602900-01);Peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain containing protein. (Os11t0602900-02)
Sequence

ATGGCGGCTTTGCTCCGCCACGCCGCGGCGGCGGCGGCGGCCGTGGTCCTCCTCATCGCG
GCGGCCGCCTCCACCGACGGCGCCACCAGCTTCTACGCCTCGGACCCAAACCTCGGATCC
GCCCGCGTCGTCTTCCAGACAACTCATGGTGACATTGAGTTTGGCTTCTTTCCTCATGTT
GCTCCTAAGACAGTTGAACACATTTACAAACTTGTGAGGCTTGGGTGCTACAACACAAAT
CACTTTTTCCGGGTTGACAAGGGTTTTGTTGCACAAGTTGCTTCTGTTGTGGGTGGTAGA
ACTGCCCCCATGAATGATGAGCAGCAAGAGGAAGCAGAGAAATCGGTTGTTGGTGAATTT
AGTACTGTCAAGCATGTCAGGGGGATTCTGTCCATGGGAAGGCACTCTGATCCAAACAGT
GGTGGTTCTTCCTTTTCCATCCTTCTTGGAGATGCACCACACCTTGATGGACAGTATGCT
GTATTTGGAAGGCTCACAAAAGGTGATGATACATTAAGAAAACTTGAGCAACTTCCAACT
CGTAGAGAAGGCATATTTGTAATGCCTATTGAGCGTATCAGCATTCTGTCAACATACTAT
TATGATGTTGATTTAGAGAGCTGTGAAGCAGAAAAGTCCATTCTTAGGAGGAGACTTTCT
GAATCAGCATCAGAAGTTGAGAGATGGAGAAGAAAGTGCTTTGCATGA

Peptide Sequence

PEP ID

Os11t0602900-02
PEP Infomation

pep chromosome:IRGSP-1.0:11:23212506:23217465:1 gene:Os11g0602900 transcript:Os11t0602900-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLOPHILIN 23 description:Peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain containing protein. (Os11t0602900-01);Peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain containing protein. (Os11t0602900-02)
Sequence

MAALLRHAAAAAAAVVLLIAAAASTDGATSFYASDPNLGSARVVFQTTHGDIEFGFFPHV
APKTVEHIYKLVRLGCYNTNHFFRVDKGFVAQVASVVGGRTAPMNDEQQEEAEKSVVGEF
STVKHVRGILSMGRHSDPNSGGSSFSILLGDAPHLDGQYAVFGRLTKGDDTLRKLEQLPT
RREGIFVMPIERISILSTYYYDVDLESCEAEKSILRRRLSESASEVERWRRKCFA

Transcript Sequence

Transcript ID

Os11t0602900-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:23212506:23217465:1 gene:Os11g0602900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLOPHILIN 23 description:Peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain containing protein. (Os11t0602900-01);Peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain containing protein. (Os11t0602900-02)
Sequence

AGAGAGAGAGGAGGTGGGAACTGGGAAGAAAAAAATGGCGGCTTTGCTCCGCCACGCCGC
GGCGGCGGCGGCGGCCGTGGTCCTCCTCATCGCGGCGGCCGCCTCCACCGACGGCGCCAC
CAGCTTCTACGCCTCGGACCCAAACCTCGGATCCGCCCGCGTCGTCTTCCAGACAACTCA
TGGTGACATTGAGTTTGGCTTCTTTCCTCATGTTGCTCCTAAGACAGTTGAACACATTTA
CAAACTTGTGAGGCTTGGGTGCTACAACACAAATCACTTTTTCCGGGTTGACAAGGGTTT
TGTTGCACAAGTTGCTTCTGTTGTGGGTGGTAGAACTGCCCCCATGAATGATGAGCAGCA
AGAGGAAGCAGAGAAATCGGTTGTTGGTGAATTTAGTACTGTCAAGCATGTCAGGGGGAT
TCTGTCCATGGGAAGGCACTCTGATCCAAACAGTGGTGGTTCTTCCTTTTCCATCCTTCT
TGGAGATGCACCACACCTTGATGGACAGTATGCTGTATTTGGAAGGCTCACAAAAGGTGA
TGATACATTAAGAAAACTTGAGCAACTTCCAACTCGTAGAGAAGGCATATTTGTAATGCC
TATTGAGCGTATCAGCATTCTGTCAACATACTATTATGATGTTGATTTAGAGAGCTGTGA
AGCAGAAAAGTCCATTCTTAGGAGGAGACTTTCTGAATCAGCATCAGAAGTTGAGAGATG
GAGAAGAAAGTGCTTTGCATGATGCTGGAGTTATGTTAGAACAGGTTCAAGCTTCTCCCT
GACTTGATTGCTGAGGCCTGAATATTGAAAGCATGGCGAGGGAACCCCTGGAATGGAATT
TGTATGTTGTGTGCATTTATCCTAGCAAAATGCTGTAACAGTTCAATAGAAGTGTGGATA
ATTCTCTCTTCTTTTTTTCTGTTAATCTTTCCAGCACACTTGGATCTGTACACAACTACA
CATCATACTGAATTTGTCATTGCTTTTACAAAAAATACATTGTACTAGTATCTTATTTTA
CGAAAATATTGTATATTACCATCTCCATTTCTGCACCT