Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0600700-02
CDS Infomation

cds chromosome:IRGSP-1.0:11:23066080:23072503:1 gene:Os11g0600700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RING domain protein. (Os11t0600700-01);Similar to RING domain protein. (Os11t0600700-02)
Sequence

ATGGGCGACCATGTGGTGGTGAATGTGGAAGGCTTGGGAAACGATGGAGGGGCTGTGGAG
AAGCCATCTGAGGCCGTGAACAGCTCAGTGGTGGCTGCTGCGTCGCTTTCTACGACTGTT
GATACGGTCGAGGAGGGCGGTGGAGAGGAGGAGCCGCTCATCCAGGCGGCGGAGTGCCGT
ATATGCCAGGAGGAGGATAGCATCAAGAACCTCGAGAAGCCTTGTGCTTGCAGTGGCAGC
CTCAAGTATGCTCATAGAGCTTGTGTGCAACGCTGGTGCAATGAGAAAGGAGACATTACA
TGTGAAATCTGTCATGAGCAATATAAGCATGGATACACAGCTCCACCTCGTGTTGAACCA
GACGATACCATCATAGATATCGGTGGTGATTGGGCACGTGACCCAAGAATTATTGCTGTA
GCGGCTGCACAACGTCGTCTTCTTGAAACTGAGTATGATGAATATGCTGGTACTGATGCT
AGTGGTGCTGCATTCTGCCGTTCTGCTGCACTTATACTAATGGCCTTGTTGCTATTGAGG
CATGCTTTGTCTATCTCAGACAATGAAGGAGATGATGATGCTTCTACCATGTTCTCGCTC
TTTCTACTTCGAGCTGCTGGATTTCTGCTGCCATGCTATATCATGGCTTGGATATTCAGT
ATTTTGCATCGCCGGCGACAAAGACAGGAAGCGGCTGCAATTGCTGCAGCAGAGGTGGCA
TTCATCCTGCAATCAGCCCAAGGCCATGCCCTTCAGTTCACCATCGCTCCAGACTCCCCC
GCCACTCCACAGCATGAGCCACAGCAGCAGCAGCCGCAGCCGCAGCCGCAGCAATAG

Peptide Sequence

PEP ID

Os11t0600700-02
PEP Infomation

pep chromosome:IRGSP-1.0:11:23066080:23072503:1 gene:Os11g0600700 transcript:Os11t0600700-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RING domain protein. (Os11t0600700-01);Similar to RING domain protein. (Os11t0600700-02)
Sequence

MGDHVVVNVEGLGNDGGAVEKPSEAVNSSVVAAASLSTTVDTVEEGGGEEEPLIQAAECR
ICQEEDSIKNLEKPCACSGSLKYAHRACVQRWCNEKGDITCEICHEQYKHGYTAPPRVEP
DDTIIDIGGDWARDPRIIAVAAAQRRLLETEYDEYAGTDASGAAFCRSAALILMALLLLR
HALSISDNEGDDDASTMFSLFLLRAAGFLLPCYIMAWIFSILHRRRQRQEAAAIAAAEVA
FILQSAQGHALQFTIAPDSPATPQHEPQQQQPQPQPQQ

Transcript Sequence

Transcript ID

Os11t0600700-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:23066080:23072503:1 gene:Os11g0600700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RING domain protein. (Os11t0600700-01);Similar to RING domain protein. (Os11t0600700-02)
Sequence

AAAAGCCTAACTAATCGGGGGCAAGACGAGGAGGAGAGCGGATTCTCGTCGGCTTCGGCG
ACCGGAAGAGGAGAGGAGACCGACCCCGCGCCGTGTTCCGCCGCCGCCGCCGCCGCCGAC
GACGACGACGGCAAGTAGGAATTTGATTCTCCTGGGGAATTAACTTGTTAGGAGAAAAGG
AATTTGGGATGGGCGACCATGTGGTGGTGAATGTGGAAGGCTTGGGAAACGATGGAGGGG
CTGTGGAGAAGCCATCTGAGGCCGTGAACAGCTCAGTGGTGGCTGCTGCGTCGCTTTCTA
CGACTGTTGATACGGTCGAGGAGGGCGGTGGAGAGGAGGAGCCGCTCATCCAGGCGGCGG
AGTGCCGTATATGCCAGGAGGAGGATAGCATCAAGAACCTCGAGAAGCCTTGTGCTTGCA
GTGGCAGCCTCAAGTATGCTCATAGAGCTTGTGTGCAACGCTGGTGCAATGAGAAAGGAG
ACATTACATGTGAAATCTGTCATGAGCAATATAAGCATGGATACACAGCTCCACCTCGTG
TTGAACCAGACGATACCATCATAGATATCGGTGGTGATTGGGCACGTGACCCAAGAATTA
TTGCTGTAGCGGCTGCACAACGTCGTCTTCTTGAAACTGAGTATGATGAATATGCTGGTA
CTGATGCTAGTGGTGCTGCATTCTGCCGTTCTGCTGCACTTATACTAATGGCCTTGTTGC
TATTGAGGCATGCTTTGTCTATCTCAGACAATGAAGGAGATGATGATGCTTCTACCATGT
TCTCGCTCTTTCTACTTCGAGCTGCTGGATTTCTGCTGCCATGCTATATCATGGCTTGGA
TATTCAGTATTTTGCATCGCCGGCGACAAAGACAGGAAGCGGCTGCAATTGCTGCAGCAG
AGGTGGCATTCATCCTGCAATCAGCCCAAGGCCATGCCCTTCAGTTCACCATCGCTCCAG
ACTCCCCCGCCACTCCACAGCATGAGCCACAGCAGCAGCAGCCGCAGCCGCAGCCGCAGC
AATAGCTAGTTACTTCAGTAGCGTCTCTCAACTACTGACTCGCACATGCAGAAGAAGAGG
ATACCTCAGCTAGTGGCCGCTTTGTTGTTTCCTGTTGCAACTGGCCCAGGGACGCTAAGA
ACCTGGCCTCGCCTTGTGTGGCCGGGTAGAAACCTTGTAAAACGCCAGAGATTCATTTGT
TGCAAGCGACCGCAGCTTAAGCCCCGCTACCCTTCGATTTGTCTCTGTGTAACTCAAGCA
TTGATTTATTGTAAATTTGTCGTCTGTTGGAGTCCATTTTTTTAGTTCCTTTGCCAAGTG
TTTTACTGCCATGTACAGTATTATTACATGGGAGCTTTTATCTTTCAAAGAATTAATCTG
AGTGAGTGTG