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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0600500-00
CDS Infomation

cds chromosome:IRGSP-1.0:11:23060525:23061100:-1 gene:Os11g0600500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium-binding EF-hand domain containing protein. (Os11t0600500-00)
Sequence

ATGGAGAAGTCACCGGCCATGCACTTCCTCCTGGAACTGGAGTCCCAAGAACCGGTTTGC
CTCCTCATCCTCTTCACCATGTTTACCTGGTTCATCTCGAAGGTTCAGATGATCCTCCCT
AGTTCTTGCCAACACTGCAATTATGCCGTCACCAAGGTGACCTCGACACCGGTTCTCGCC
GACAGAAAGATATCAAAGAATCTAAGTAAGCATAAAGATGATGGGATAGAGATGACACAT
GAAGATGTTGAGTCTGTGATGACAAAGATGGGGCCTGATTTTGATCACGGAAAAACTATG
GTTTACAAGGAGATTGGTTCTAACTGCATGTCAGAGTTGTTCGATGACGATGAACCGAGC
TTGGACGAAGTAAAGCAGGCATTTTTGGTGTTTGATGAGGATAATGATGGGTACATTGAT
GCATTGGATTTGTATAGAGTCCTTAGGAATCTAGGATTAAGAGAAGGTGTAGGGGTTGAT
GAGTGTGAGCAAATGATTGCCAAATATGACATGAACAGAGATAGGAGGATAGATATGGTA
GAGTTCATTAGGGTTCTGGAGGCCAGTTTTTTCTGA

Peptide Sequence

PEP ID

Os11t0600500-00
PEP Infomation

pep chromosome:IRGSP-1.0:11:23060525:23061100:-1 gene:Os11g0600500 transcript:Os11t0600500-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium-binding EF-hand domain containing protein. (Os11t0600500-00)
Sequence

MEKSPAMHFLLELESQEPVCLLILFTMFTWFISKVQMILPSSCQHCNYAVTKVTSTPVLA
DRKISKNLSKHKDDGIEMTHEDVESVMTKMGPDFDHGKTMVYKEIGSNCMSELFDDDEPS
LDEVKQAFLVFDEDNDGYIDALDLYRVLRNLGLREGVGVDECEQMIAKYDMNRDRRIDMV
EFIRVLEASFF

Transcript Sequence

Transcript ID

Os11t0600500-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:23060525:23061100:-1 gene:Os11g0600500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium-binding EF-hand domain containing protein. (Os11t0600500-00)
Sequence

ATGGAGAAGTCACCGGCCATGCACTTCCTCCTGGAACTGGAGTCCCAAGAACCGGTTTGC
CTCCTCATCCTCTTCACCATGTTTACCTGGTTCATCTCGAAGGTTCAGATGATCCTCCCT
AGTTCTTGCCAACACTGCAATTATGCCGTCACCAAGGTGACCTCGACACCGGTTCTCGCC
GACAGAAAGATATCAAAGAATCTAAGTAAGCATAAAGATGATGGGATAGAGATGACACAT
GAAGATGTTGAGTCTGTGATGACAAAGATGGGGCCTGATTTTGATCACGGAAAAACTATG
GTTTACAAGGAGATTGGTTCTAACTGCATGTCAGAGTTGTTCGATGACGATGAACCGAGC
TTGGACGAAGTAAAGCAGGCATTTTTGGTGTTTGATGAGGATAATGATGGGTACATTGAT
GCATTGGATTTGTATAGAGTCCTTAGGAATCTAGGATTAAGAGAAGGTGTAGGGGTTGAT
GAGTGTGAGCAAATGATTGCCAAATATGACATGAACAGAGATAGGAGGATAGATATGGTA
GAGTTCATTAGGGTTCTGGAGGCCAGTTTTTTCTGA