Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0592800-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:22561645:22565343:-1 gene:Os11g0592800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to CDK5RAP1-like protein. (Os11t0592800-01)
Sequence

ATGGCGGCGCCGCTCACCGCCGCCGCCGCGCTCCGCCTCGGCCGGGGCCTCAGCCACCGC
CGCGCCTTCCTCCTCCGCCGCCGCTACTCCCCCGCGCCCCTTGCTCCTTCCCCGTGCGCG
GCTCCTCGATGCCTCTCCAGCGCCGCCCATCCGCCCCCGCCTCCTCCCCGCCGCCTCGCC
CGCTCTGGCCCCTCCCGTCCGCTCGCCGCATCCGCCGCCACGGCCGTGTCCGAGGCGCAG
ACAGATTTAGAGTCTGGTCCGGTGACAGCAAGCAAGGGTCGCATTTACCATGAGACATAT
GGGTGCCAAATGAATGTAAACGACATGGAGATCGTGCTTTCTATCATGAAAAATGAAGGG
TATGATGAAATTGTCCCTGACCCTGAGAGTGCAGAGATAATATTTATCAACACATGTGCA
ATCCGTGACAACGCAGAGCAGAAAGTCTGGCAGCGACTGAACTACTTTTGGTTCCTGAAA
AGGCAATGGAAAGCTAATGTTGCTGCAGGGCGGTCAAGATCTCTGCGGCCTCCAAAGATT
GCCGTTCTTGGGTGCATGGCAGAGCGATTGAAGGAGAAAATTCTCGATTCTGATAAGATG
GTTGATGTTGTCTGTGGACCTGATGCGTATAGGGACTTGCCTAGGTTGCTGCAGGAAGTT
GATTATGGGCAGAAGGGTATCAACACGCTTCTCTCACTCGAGGAGACGTATGCTGACATC
ACCCCAGTTAGGATCTCTGACAATTCAGTGACCGCATTTGTATCAATTATGAGGGGTTGC
AACAATATGTGCTCCTTTTGTATCGTTCCTTTCACTAGAGGTAGGGAAAGGTCCCGTCCA
GTGTCCTCAATTGTCCGAGAAGTTGGGGAGCTCTGGAAAGCAGGCGTGAAGGAAGTAATG
CTTCTTGGTCAGAACGTAAACAGTTATAACGACACTTCTGAAGTTGAGGAATTAGAACCT
GGTAAAAACTGGGAGCTCAGTGAAGGGTTTTCTAGCATGTGCAAGGTGAAGAATATGGGG
TTGCGTTTTGCTGATCTCCTGGATCAGTTATCTTTGGAATACCCTGAGATGCGGTTCAGG
TTTACCTCTCCGCATCCAAAGGATTACCCAGACGAGCTTCTATATTTAATGCGGGATAGG
CACAATGTTTGCAAACTTATTCATATGCCAGCTCAATCAGGCAGCTCAGCAGTGCTGGAA
CGTATGCGTCGGGGTTATACTAGAGAGGCATACTTGGAGCTTGTGCAGAAAATCCGTAGT
ATCATTCCAGATGTTGGGTTAAGCAGTGATTTCATAAGTGGTTTTTGTGGAGAGACAGAA
GAGGAACATGCTGAGACTCTTACCCTTGTAAGGGCTGTTGGATATGATATGGCCTACATG
TTTGCATATAGCATGAGAGAAAAGACTCATGCTCATCGGAATTATGTGGATGATGTCCCC
GATGATGTCAAGCAGAGGAGACTTGCAGAGCTAATCAGCACCTTCCGTGAAACTACAGCG
AAGATCTACGATTCTCAGGTTGGGACAGTACAGCTAGTTCTAGTCGAGGGACCGAACAAG
CGGGCTCCTGAAACAGAGATGATTGGAAAAACCGACAGGGGGCATAGGGTTTCGTTTGCG
AGCGTCCCTGTACCGCATACATTTGAAGGTGATGAACTGCGCAAGCCAGTGGTTGGTGAC
TTCATTGAGGTGAAAATCACCAAGTCATCGACAGCATCATTATCCGGGGATGTAATCGCG
CGCACAAGCTTGAGCAAATTCTACAAGAATCATTCATCTGAAGCACATGCTGTTGCGGCT
TAA

Peptide Sequence

PEP ID

Os11t0592800-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:22561645:22565343:-1 gene:Os11g0592800 transcript:Os11t0592800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to CDK5RAP1-like protein. (Os11t0592800-01)
Sequence

MAAPLTAAAALRLGRGLSHRRAFLLRRRYSPAPLAPSPCAAPRCLSSAAHPPPPPPRRLA
RSGPSRPLAASAATAVSEAQTDLESGPVTASKGRIYHETYGCQMNVNDMEIVLSIMKNEG
YDEIVPDPESAEIIFINTCAIRDNAEQKVWQRLNYFWFLKRQWKANVAAGRSRSLRPPKI
AVLGCMAERLKEKILDSDKMVDVVCGPDAYRDLPRLLQEVDYGQKGINTLLSLEETYADI
TPVRISDNSVTAFVSIMRGCNNMCSFCIVPFTRGRERSRPVSSIVREVGELWKAGVKEVM
LLGQNVNSYNDTSEVEELEPGKNWELSEGFSSMCKVKNMGLRFADLLDQLSLEYPEMRFR
FTSPHPKDYPDELLYLMRDRHNVCKLIHMPAQSGSSAVLERMRRGYTREAYLELVQKIRS
IIPDVGLSSDFISGFCGETEEEHAETLTLVRAVGYDMAYMFAYSMREKTHAHRNYVDDVP
DDVKQRRLAELISTFRETTAKIYDSQVGTVQLVLVEGPNKRAPETEMIGKTDRGHRVSFA
SVPVPHTFEGDELRKPVVGDFIEVKITKSSTASLSGDVIARTSLSKFYKNHSSEAHAVAA

Transcript Sequence

Transcript ID

Os11t0592800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:22561645:22565343:-1 gene:Os11g0592800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to CDK5RAP1-like protein. (Os11t0592800-01)
Sequence

AACCTCGCCATGGCGGCGCCGCTCACCGCCGCCGCCGCGCTCCGCCTCGGCCGGGGCCTC
AGCCACCGCCGCGCCTTCCTCCTCCGCCGCCGCTACTCCCCCGCGCCCCTTGCTCCTTCC
CCGTGCGCGGCTCCTCGATGCCTCTCCAGCGCCGCCCATCCGCCCCCGCCTCCTCCCCGC
CGCCTCGCCCGCTCTGGCCCCTCCCGTCCGCTCGCCGCATCCGCCGCCACGGCCGTGTCC
GAGGCGCAGACAGATTTAGAGTCTGGTCCGGTGACAGCAAGCAAGGGTCGCATTTACCAT
GAGACATATGGGTGCCAAATGAATGTAAACGACATGGAGATCGTGCTTTCTATCATGAAA
AATGAAGGGTATGATGAAATTGTCCCTGACCCTGAGAGTGCAGAGATAATATTTATCAAC
ACATGTGCAATCCGTGACAACGCAGAGCAGAAAGTCTGGCAGCGACTGAACTACTTTTGG
TTCCTGAAAAGGCAATGGAAAGCTAATGTTGCTGCAGGGCGGTCAAGATCTCTGCGGCCT
CCAAAGATTGCCGTTCTTGGGTGCATGGCAGAGCGATTGAAGGAGAAAATTCTCGATTCT
GATAAGATGGTTGATGTTGTCTGTGGACCTGATGCGTATAGGGACTTGCCTAGGTTGCTG
CAGGAAGTTGATTATGGGCAGAAGGGTATCAACACGCTTCTCTCACTCGAGGAGACGTAT
GCTGACATCACCCCAGTTAGGATCTCTGACAATTCAGTGACCGCATTTGTATCAATTATG
AGGGGTTGCAACAATATGTGCTCCTTTTGTATCGTTCCTTTCACTAGAGGTAGGGAAAGG
TCCCGTCCAGTGTCCTCAATTGTCCGAGAAGTTGGGGAGCTCTGGAAAGCAGGCGTGAAG
GAAGTAATGCTTCTTGGTCAGAACGTAAACAGTTATAACGACACTTCTGAAGTTGAGGAA
TTAGAACCTGGTAAAAACTGGGAGCTCAGTGAAGGGTTTTCTAGCATGTGCAAGGTGAAG
AATATGGGGTTGCGTTTTGCTGATCTCCTGGATCAGTTATCTTTGGAATACCCTGAGATG
CGGTTCAGGTTTACCTCTCCGCATCCAAAGGATTACCCAGACGAGCTTCTATATTTAATG
CGGGATAGGCACAATGTTTGCAAACTTATTCATATGCCAGCTCAATCAGGCAGCTCAGCA
GTGCTGGAACGTATGCGTCGGGGTTATACTAGAGAGGCATACTTGGAGCTTGTGCAGAAA
ATCCGTAGTATCATTCCAGATGTTGGGTTAAGCAGTGATTTCATAAGTGGTTTTTGTGGA
GAGACAGAAGAGGAACATGCTGAGACTCTTACCCTTGTAAGGGCTGTTGGATATGATATG
GCCTACATGTTTGCATATAGCATGAGAGAAAAGACTCATGCTCATCGGAATTATGTGGAT
GATGTCCCCGATGATGTCAAGCAGAGGAGACTTGCAGAGCTAATCAGCACCTTCCGTGAA
ACTACAGCGAAGATCTACGATTCTCAGGTTGGGACAGTACAGCTAGTTCTAGTCGAGGGA
CCGAACAAGCGGGCTCCTGAAACAGAGATGATTGGAAAAACCGACAGGGGGCATAGGGTT
TCGTTTGCGAGCGTCCCTGTACCGCATACATTTGAAGGTGATGAACTGCGCAAGCCAGTG
GTTGGTGACTTCATTGAGGTGAAAATCACCAAGTCATCGACAGCATCATTATCCGGGGAT
GTAATCGCGCGCACAAGCTTGAGCAAATTCTACAAGAATCATTCATCTGAAGCACATGCT
GTTGCGGCTTAAGGATTACTAGTTGAGTTTGTAGCAGGCCACATCTCAACTGAATCAGAT
CCCCTTGCCATGATCTCTATCTTGAAATGACTGATAAGTTAGACCATACAATGCAATTTA
ACTGGTGACTCAGTTTTGTGAAGACAACTAATGTGATGTGCTTTTGGCATTTGAAGCCAA
AACAATCACCAGCATTTAGTCTGCTAGTCATGTGAAGCAATGCCTCTTCTCTTATGAAGT
CTGTATTATCATGTAAAGAGTTTAAGCACTACTGGCCAGCAACATTTTTTTTTTCTTTTG
CAAGTTACTGCAACTCGGCAGCGTGAGGTTTATTTATTTATTTTTCTTCTTTGGG