Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0592400-00
CDS Infomation	cds chromosome:IRGSP-1.0:11:22523670:22529610:-1 gene:Os11g0592400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CFM3 description:Similar to CRS1/YhbY domain containing protein, expressed. (Os11t0592400-00)
Sequence	ATGGCCGCCGCGGCCATGGCCATCTCCCCTTCCATCCACCTCCACCTCCACCTCCACCTC CACCACCCGCCTCGCCTCCACCGCCTCCTCCACCTCTCCACCACCTCCCCCTACCCATGG CTCTCCGCCTGGCCGACCGCCCACCGCCGCCGCGTCCCCCTCCGCCGCCCCGCCTCCGCG CTCGACCTCCGCCCGGAGCCCTCCCCTTCCTCCGACTCCGACGACGACGCCGCCTTCGGC ACCAGCCGCTCCTCCTCCCGCTCCGCCATGTCCCTCATCCTCTCCCGCCTCCGCAATTCC GGCTACTCCTACTCCCCCCCGGAGCTCCCGCCGCGCCCGCCGAGGGGCTCGGTGGAGGAC GTGTTCCGCGTCGACGACGGGGTGGTGCCGAACGCGCGGGGAGGGTTCGACGACGACGCG GAGTCGGCGCTGGTGGACGCGCGGTTCCCGTGGGAGCTGCCGATGCCGCCGCCCGAGGCG GGGCCCAGGGCGGCGAGGTCGAAGGCGTGGATGGCGGAGCTGACGCTCCCCGAGGCCGAG CTGAGGAGGCTGAGGCACGCCGGGATGAGGCTCAAGTCGAGGATCAAGGTGGGCGGCGCC GGGGTCACCAGGGAGATCGTGGAGAGGATCAGGGACAGGTGGAGGAACGACGAGGTGGTC AGGATCAAGGTCACCGGCACGCCCGCGCTCAACATGCGCCTCTTCCACGAGATACTCGAG AGAAAAACAGGGGGTTTGGTAATATGGAGGTCTGGAACTTCTGTTTCTCTGTACAGGGGA GTAGCCTATGACATACCTGAGCCCACTAAAGGAACAAGTAAGAATACACAAACTCTTGGT ATGAAGTCCTCCATCAAAGAGCCACCTGGTCATTCGTTGCTGCCTAATGAGAAAGTAAAC GAGATGCAAGACAACAATGGAGCATTGGTATCTAATGCTGAGAAAGATACACTAGTTGAA CCAGTTCCAGAAATCAAATATGAAGATGAAATTGACAAGCTATTGGATGAGCTTGGACCA AGATACGACGACTGGCCAAGACCTGATCCATCACCAGTAGATGCAGACTTGCTTCCTGCA ACTGTACCAGGATATAAGCCCCCTTTCAGAGTTCTACCATATGGAGTACGACCATCTCTC AGCAGAAGGGACACTACAAATTTACGGCGTCTTGCCCGTGGGCTGCCACCTCACTTTGCT CTTGGGCGAAGCAGACAACTCCAAGGCTTAGCAGCTGCTATGGTGAAGTTGTGGGAGAAA AGTTCTATTGCAAAAATTGCTCTGAAAAGAGGAGTGCAGCTTACCACAAGTGAGAGGATG GCTGAAGATATAAAGAAATTGACAGGTGGTGTAATGCTTTCGAGGAACAATGACTTTATG GTCTTCTACAGAGGAAAGGATTTCTTGTCCCCAGAACTCGCGGAGAAACTGCTAGAGAGG GAAAGATGGGCAAAGTCCTTACAAGATGAGGAGCAAGCGCGATTAAATGCAGCGTCTTCC TTTTCTTCCAGAACTGAGGCACCTGTAGAGCCTACTGTGGCTGGTACCCTTGGAGAAACT CTTGAGGCTAACTCTAAATATGGAAATAAACTGGATGAGAATTATGAGAACAAGATGACT AGAACTGTAGAAGCTGCAAGACATGCTGACCTTGTAAGGAAGCTAGAGTGGAAGCTCCAA CTTGCACAGAAGAAGATAGAAAAAGCTGAAAGGGTCCTTGGAAAAGTTGAGACAGCCCTG AAGCCAACTGAAGGTATCCAACCGCCTGAAACAATAACAGATGAAGAGAGATTCATGTTT CGGAAACTTGGTCTAAGGATGAAGGCATTCCTGCTCCTTGGCAGGAGAGGAGTTTTTGAT GGCACGATTGAAAATATGCACTTGCACTGGAAGTACAGGGAACTAGTGAAAATACTTGTG AAAGCAAAGTCTTTTGGAGATGTCAAGAAGATTGCATTGTCTCTTGAAGCTGAGAGTGGG GGTATTTTAGTTTCTGTGGACAAAGTCTCCAAAGGTTATGCCATCGTTGTGTTCCGTGGG AAGGACTATGCACGCCCTTCTAAGCTGAGACCCAGGAATCTTTTGTCAAAGCGGAAGGCT TTAGCTCGATCCATCGAAATTCAGAGACGCGAGGCCCTCAGTCATCATATCGCAACCTTG AACAGAAGAGTAAAGAAGCTCAAAGCAGAACTGCTCCAAATGGAAGGGGTGAAAGAGGAA GGAGATGTGGAGTTGTATGCCAAACTTGATTCTGCTTATTCCAGTGACGAGGAAGATGTG GAGGATGAGGATGATGAGGCCTACCTCAGGAGTTTCGACAATTCGGTAGCTGTCCAGAAC GGTGATGATCGAACCTCCCTTGATGGCAGCGACGCCAATTCTGACGACGAGGGTGACTAC TCTGACGAGGACGATGATGAAGACGACGACAATGATGAAGAGGATGGTTTTGATTATGAA AACGATGATGAGGATGATGTGCCTCCGACTACTTCTGATGGTGATCTATACAACCACACG GATTTTGGTAGTTCAGACAGTGAAAACTATGTTTCACTGTCAGGGAGGGGTGACCCAGAT GTAAAAAGTAAAGGGAGTGCCCTTGACAGCAGAAACTCGTACAGTGAGCAATCAACTGAA CTGACAAACACATGTAGTTAG

Peptide Sequence

PEP ID	Os11t0592400-00
PEP Infomation	pep chromosome:IRGSP-1.0:11:22523670:22529610:-1 gene:Os11g0592400 transcript:Os11t0592400-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CFM3 description:Similar to CRS1/YhbY domain containing protein, expressed. (Os11t0592400-00)
Sequence	MAAAAMAISPSIHLHLHLHLHHPPRLHRLLHLSTTSPYPWLSAWPTAHRRRVPLRRPASA LDLRPEPSPSSDSDDDAAFGTSRSSSRSAMSLILSRLRNSGYSYSPPELPPRPPRGSVED VFRVDDGVVPNARGGFDDDAESALVDARFPWELPMPPPEAGPRAARSKAWMAELTLPEAE LRRLRHAGMRLKSRIKVGGAGVTREIVERIRDRWRNDEVVRIKVTGTPALNMRLFHEILE RKTGGLVIWRSGTSVSLYRGVAYDIPEPTKGTSKNTQTLGMKSSIKEPPGHSLLPNEKVN EMQDNNGALVSNAEKDTLVEPVPEIKYEDEIDKLLDELGPRYDDWPRPDPSPVDADLLPA TVPGYKPPFRVLPYGVRPSLSRRDTTNLRRLARGLPPHFALGRSRQLQGLAAAMVKLWEK SSIAKIALKRGVQLTTSERMAEDIKKLTGGVMLSRNNDFMVFYRGKDFLSPELAEKLLER ERWAKSLQDEEQARLNAASSFSSRTEAPVEPTVAGTLGETLEANSKYGNKLDENYENKMT RTVEAARHADLVRKLEWKLQLAQKKIEKAERVLGKVETALKPTEGIQPPETITDEERFMF RKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESG GILVSVDKVSKGYAIVVFRGKDYARPSKLRPRNLLSKRKALARSIEIQRREALSHHIATL NRRVKKLKAELLQMEGVKEEGDVELYAKLDSAYSSDEEDVEDEDDEAYLRSFDNSVAVQN GDDRTSLDGSDANSDDEGDYSDEDDDEDDDNDEEDGFDYENDDEDDVPPTTSDGDLYNHT DFGSSDSENYVSLSGRGDPDVKSKGSALDSRNSYSEQSTELTNTCS

Transcript Sequence

Transcript ID	Os11t0592400-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:22523670:22529610:-1 gene:Os11g0592400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CFM3 description:Similar to CRS1/YhbY domain containing protein, expressed. (Os11t0592400-00)
Sequence	TCCACTCTCCTCCACCCATGGCCGCCGCGGCCATGGCCATCTCCCCTTCCATCCACCTCC ACCTCCACCTCCACCTCCACCACCCGCCTCGCCTCCACCGCCTCCTCCACCTCTCCACCA CCTCCCCCTACCCATGGCTCTCCGCCTGGCCGACCGCCCACCGCCGCCGCGTCCCCCTCC GCCGCCCCGCCTCCGCGCTCGACCTCCGCCCGGAGCCCTCCCCTTCCTCCGACTCCGACG ACGACGCCGCCTTCGGCACCAGCCGCTCCTCCTCCCGCTCCGCCATGTCCCTCATCCTCT CCCGCCTCCGCAATTCCGGCTACTCCTACTCCCCCCCGGAGCTCCCGCCGCGCCCGCCGA GGGGCTCGGTGGAGGACGTGTTCCGCGTCGACGACGGGGTGGTGCCGAACGCGCGGGGAG GGTTCGACGACGACGCGGAGTCGGCGCTGGTGGACGCGCGGTTCCCGTGGGAGCTGCCGA TGCCGCCGCCCGAGGCGGGGCCCAGGGCGGCGAGGTCGAAGGCGTGGATGGCGGAGCTGA CGCTCCCCGAGGCCGAGCTGAGGAGGCTGAGGCACGCCGGGATGAGGCTCAAGTCGAGGA TCAAGGTGGGCGGCGCCGGGGTCACCAGGGAGATCGTGGAGAGGATCAGGGACAGGTGGA GGAACGACGAGGTGGTCAGGATCAAGGTCACCGGCACGCCCGCGCTCAACATGCGCCTCT TCCACGAGATACTCGAGAGAAAAACAGGGGGTTTGGTAATATGGAGGTCTGGAACTTCTG TTTCTCTGTACAGGGGAGTAGCCTATGACATACCTGAGCCCACTAAAGGAACAAGTAAGA ATACACAAACTCTTGGTATGAAGTCCTCCATCAAAGAGCCACCTGGTCATTCGTTGCTGC CTAATGAGAAAGTAAACGAGATGCAAGACAACAATGGAGCATTGGTATCTAATGCTGAGA AAGATACACTAGTTGAACCAGTTCCAGAAATCAAATATGAAGATGAAATTGACAAGCTAT TGGATGAGCTTGGACCAAGATACGACGACTGGCCAAGACCTGATCCATCACCAGTAGATG CAGACTTGCTTCCTGCAACTGTACCAGGATATAAGCCCCCTTTCAGAGTTCTACCATATG GAGTACGACCATCTCTCAGCAGAAGGGACACTACAAATTTACGGCGTCTTGCCCGTGGGC TGCCACCTCACTTTGCTCTTGGGCGAAGCAGACAACTCCAAGGCTTAGCAGCTGCTATGG TGAAGTTGTGGGAGAAAAGTTCTATTGCAAAAATTGCTCTGAAAAGAGGAGTGCAGCTTA CCACAAGTGAGAGGATGGCTGAAGATATAAAGAAATTGACAGGTGGTGTAATGCTTTCGA GGAACAATGACTTTATGGTCTTCTACAGAGGAAAGGATTTCTTGTCCCCAGAACTCGCGG AGAAACTGCTAGAGAGGGAAAGATGGGCAAAGTCCTTACAAGATGAGGAGCAAGCGCGAT TAAATGCAGCGTCTTCCTTTTCTTCCAGAACTGAGGCACCTGTAGAGCCTACTGTGGCTG GTACCCTTGGAGAAACTCTTGAGGCTAACTCTAAATATGGAAATAAACTGGATGAGAATT ATGAGAACAAGATGACTAGAACTGTAGAAGCTGCAAGACATGCTGACCTTGTAAGGAAGC TAGAGTGGAAGCTCCAACTTGCACAGAAGAAGATAGAAAAAGCTGAAAGGGTCCTTGGAA AAGTTGAGACAGCCCTGAAGCCAACTGAAGGTATCCAACCGCCTGAAACAATAACAGATG AAGAGAGATTCATGTTTCGGAAACTTGGTCTAAGGATGAAGGCATTCCTGCTCCTTGGCA GGAGAGGAGTTTTTGATGGCACGATTGAAAATATGCACTTGCACTGGAAGTACAGGGAAC TAGTGAAAATACTTGTGAAAGCAAAGTCTTTTGGAGATGTCAAGAAGATTGCATTGTCTC TTGAAGCTGAGAGTGGGGGTATTTTAGTTTCTGTGGACAAAGTCTCCAAAGGTTATGCCA TCGTTGTGTTCCGTGGGAAGGACTATGCACGCCCTTCTAAGCTGAGACCCAGGAATCTTT TGTCAAAGCGGAAGGCTTTAGCTCGATCCATCGAAATTCAGAGACGCGAGGCCCTCAGTC ATCATATCGCAACCTTGAACAGAAGAGTAAAGAAGCTCAAAGCAGAACTGCTCCAAATGG AAGGGGTGAAAGAGGAAGGAGATGTGGAGTTGTATGCCAAACTTGATTCTGCTTATTCCA GTGACGAGGAAGATGTGGAGGATGAGGATGATGAGGCCTACCTCAGGAGTTTCGACAATT CGGTAGCTGTCCAGAACGGTGATGATCGAACCTCCCTTGATGGCAGCGACGCCAATTCTG ACGACGAGGGTGACTACTCTGACGAGGACGATGATGAAGACGACGACAATGATGAAGAGG ATGGTTTTGATTATGAAAACGATGATGAGGATGATGTGCCTCCGACTACTTCTGATGGTG ATCTATACAACCACACGGATTTTGGTAGTTCAGACAGTGAAAACTATGTTTCACTGTCAG GGAGGGGTGACCCAGATGTAAAAAGTAAAGGGAGTGCCCTTGACAGCAGAAACTCGTACA GTGAGCAATCAACTGAACTGACAAACACATGTAGTTAG