Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0592000-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:22502008:22502923:1 gene:Os11g0592000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PATHOGENESIS-RELATED GENE 4C description:Similar to Barwin. (Os11t0592000-01)
Sequence

ATGGCCATGGCGATGAGAAGGGTGGTGCTGGTGGCGGCGGTGCTGTGCGCGGTGGTCGCC
ATGGTCACAGCGCAGGAGGCATCCAACGTGCGCGCCACGTATCACTACTATCGCCCCGCG
CAGAACAACTGGGACTTAGGAGCCCCAGCCGTGAGCGCGTATTGTGCTACGTGGGACGCT
AACAAGCCACTGTCGTGGCGTCAGAAGTATGGCTGGACTGCCTTTTGCGGGCCCGTTGGT
CCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGGTGACGAACACGGCGACGGGGGCG
CAGATCACGGCGAGGATCGTGGACCAGTGCGCCAATGGCGGCCTTGACCTGGACTGGGAC
ACCGTCTTCACCAAGATCGACACCGACGGCCAGGGCTACCAGAAGGGCCACCTCATCGTC
AACTACAAGTTCGTCGACTGCGGCGACAACTGA

Peptide Sequence

PEP ID

Os11t0592000-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:22502008:22502923:1 gene:Os11g0592000 transcript:Os11t0592000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PATHOGENESIS-RELATED GENE 4C description:Similar to Barwin. (Os11t0592000-01)
Sequence

MAMAMRRVVLVAAVLCAVVAMVTAQEASNVRATYHYYRPAQNNWDLGAPAVSAYCATWDA
NKPLSWRQKYGWTAFCGPVGPRGQAACGKCLLVTNTATGAQITARIVDQCANGGLDLDWD
TVFTKIDTDGQGYQKGHLIVNYKFVDCGDN

Transcript Sequence

Transcript ID

Os11t0592000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:22502008:22502923:1 gene:Os11g0592000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PATHOGENESIS-RELATED GENE 4C description:Similar to Barwin. (Os11t0592000-01)
Sequence

ACATTTCACTAGCAGCTAGCAAGTGTACACACATCTATAAATTGTAGTAGTAACCACCTT
AGCTGAGGTGATGGCCATGGCGATGAGAAGGGTGGTGCTGGTGGCGGCGGTGCTGTGCGC
GGTGGTCGCCATGGTCACAGCGCAGGAGGCATCCAACGTGCGCGCCACGTATCACTACTA
TCGCCCCGCGCAGAACAACTGGGACTTAGGAGCCCCAGCCGTGAGCGCGTATTGTGCTAC
GTGGGACGCTAACAAGCCACTGTCGTGGCGTCAGAAGTATGGCTGGACTGCCTTTTGCGG
GCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGGTGACGAACACGGC
GACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAGTGCGCCAATGGCGGCCTTGACCT
GGACTGGGACACCGTCTTCACCAAGATCGACACCGACGGCCAGGGCTACCAGAAGGGCCA
CCTCATCGTCAACTACAAGTTCGTCGACTGCGGCGACAACTGATTAAGCTATAGCTGCCT
TAGCTAATTAATTACTCTCCATTATTACATGCTAATAAGGTTGCTGCTGCATATACATTA
TTGTCGACAGGGCAGAGTAGAGTGGTAAACTCTGCCTGATGAATAAATTAAGCAGCTGAT
AAATAATTGTGATATGTTGATCGATCTGCTCAAGATCTTTGTATACATATTCACAGGAAG
TATCAATTAATAGATTTCTCTCG