Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0587500-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:22267505:22271370:-1 gene:Os11g0587500 gene_biotype:protein_coding transcript_biotype:protein_coding description:RabGAP/TBC domain containing protein. (Os11t0587500-01)
Sequence

ATGCTGAGAAGGGCGGGGAAAGGGGAGGTTGCAGATGGGTTCTACCAGATTCGCTCGGAT
TGCACCCACAAGGTCCCCGAGACCAAGTTCAAGATCAAGGTTGGGAAAACGTTGAGCGTT
CGGAAATGGCATGCTGCGTTTACGCGTGAAGGCCGTTTGGATATTGCTTCGGTTCTGAAC
CGGATACAGAAAGGGGGTGTCCATCCTACAATCAGGGGAGAGGTCTGGGAGTTTTTACTT
GGCTGTTTTGATCCTGGGAGCACTTTTGATGAGCGCGAGCAGATTAGGGAGAAAAGAAGA
ATACAATATGCCATATGGAAGCAAGAATGCAAAGATATGGACTCCCATGTTGGTAGCGGT
AAAATTATCACAGCCCCAATTATAACTGAGGATGGAAAACCTATTAAGGATCCTTTGGTT
TTGCTCGAAGCTACTTCAGACCAGCACACAATGCAAGGTAGTTCATCCAGCAGCAGGAAC
GAAAATGAGGTGGACAAGTCCGAAAATTGTGTGGTGGATAAACAAATTATCGAATGGAAG
CTTTTGCTACATCAAATTGGCCTTGATGTGCTGCGCACTGATCGATCCATGGTGTTTTAT
GAGAACAAAGAAAATCTTTCGAAGTTATGGGATATTCTTGCTGTATATGCTTGGATCGAC
AAAGAAATTGGCTATTGTCAAGGAATGAGTGATTTATGCTCACCGATGATAGTGCTGCTC
AACGACGAAGCAGATGCATTTTGGTGCTTTGAGAGATTAATGCGTAGACTGATGCACACA
GCAATCTGTTGGGGTGGAGAACCAGCTTCAGCACCTTGCGTCTATCATTCAAGTGCTTGA

Peptide Sequence

PEP ID

Os11t0587500-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:22267505:22271370:-1 gene:Os11g0587500 transcript:Os11t0587500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:RabGAP/TBC domain containing protein. (Os11t0587500-01)
Sequence

MLRRAGKGEVADGFYQIRSDCTHKVPETKFKIKVGKTLSVRKWHAAFTREGRLDIASVLN
RIQKGGVHPTIRGEVWEFLLGCFDPGSTFDEREQIREKRRIQYAIWKQECKDMDSHVGSG
KIITAPIITEDGKPIKDPLVLLEATSDQHTMQGSSSSSRNENEVDKSENCVVDKQIIEWK
LLLHQIGLDVLRTDRSMVFYENKENLSKLWDILAVYAWIDKEIGYCQGMSDLCSPMIVLL
NDEADAFWCFERLMRRLMHTAICWGGEPASAPCVYHSSA

Transcript Sequence

Transcript ID

Os11t0587500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:22267505:22271370:-1 gene:Os11g0587500 gene_biotype:protein_coding transcript_biotype:protein_coding description:RabGAP/TBC domain containing protein. (Os11t0587500-01)
Sequence

CCCAAAGCTAGAGTCTTTCTTGCTTCTCCTGAGTCCTGACTTCTTGATCCACCGATTGTT
CTTCGATTTCTTGCTTCTTGATTCGTCGCCGCTGCTGCTGCTGGAGGCAGAAAGGGAGCA
CAAGATCGAGCAATCCAAGCTGCAATTAGAGGAGGAGGAAGAGGAAGAGGAGGAGGATGC
TGAGAAGGGCGGGGAAAGGGGAGGTTGCAGATGGGTTCTACCAGATTCGCTCGGATTGCA
CCCACAAGGTCCCCGAGACCAAGTTCAAGATCAAGGTTGGGAAAACGTTGAGCGTTCGGA
AATGGCATGCTGCGTTTACGCGTGAAGGCCGTTTGGATATTGCTTCGGTTCTGAACCGGA
TACAGAAAGGGGGTGTCCATCCTACAATCAGGGGAGAGGTCTGGGAGTTTTTACTTGGCT
GTTTTGATCCTGGGAGCACTTTTGATGAGCGCGAGCAGATTAGGGAGAAAAGAAGAATAC
AATATGCCATATGGAAGCAAGAATGCAAAGATATGGACTCCCATGTTGGTAGCGGTAAAA
TTATCACAGCCCCAATTATAACTGAGGATGGAAAACCTATTAAGGATCCTTTGGTTTTGC
TCGAAGCTACTTCAGACCAGCACACAATGCAAGGTAGTTCATCCAGCAGCAGGAACGAAA
ATGAGGTGGACAAGTCCGAAAATTGTGTGGTGGATAAACAAATTATCGAATGGAAGCTTT
TGCTACATCAAATTGGCCTTGATGTGCTGCGCACTGATCGATCCATGGTGTTTTATGAGA
ACAAAGAAAATCTTTCGAAGTTATGGGATATTCTTGCTGTATATGCTTGGATCGACAAAG
AAATTGGCTATTGTCAAGGAATGAGTGATTTATGCTCACCGATGATAGTGCTGCTCAACG
ACGAAGCAGATGCATTTTGGTGCTTTGAGAGATTAATGCGTAGACTGATGCACACAGCAA
TCTGTTGGGGTGGAGAACCAGCTTCAGCACCTTGCGTCTATCATTCAAGTGCTTGACCCA
AAATTACATGACCACCTAGAAACACTTGGTGGGGGTGATTATCTCTTTGCATTCCGCATG
TTCATGGTATTGTTTCGGCGTGAATTATCATTTGGGGACTCACTATACCTTTGGGAGATG
ATGTGGGCTCTAGAATATGATCCTGACATCTTCTCCACATATGAACATATTGATGCTGCA
ACTGGTGTAACTCCAGGACATAGGCAAAAAGTAAAATCAATTCGCCAATTTGGCAAGTAC
GAGAGAGACAATATGAAGAATGGGGCTACTAGTGACAACGATGGTCCTGTTCCGATTTCT
GTTTTCCTGGTTGCTAGTGTTCTGAAGGAGAACAGTGCGAAGCTCCTGCAGGAAGCTCGA
GGGATTGATGATGTTATTAGGATTTTGAATGATGTTAATGGGAATTTGGATGCGAAAAAG
GCTTGCGCTGTTGCATTGAAACTTCACAGGAAATACCTTAAAAAGATCCAGGGAAAGAAG
CCATAACAACGAGCTCCGGGTTACTCCTGGTTTTGATCGTGGCTCTGTTTTACTCCTGCT
TTTCTCCTAATTTGTGAGAAAAATGTACAAAGTTCGTTAATTTGTGGCTGGTAAGAATTC
TACCACTAAACTATAGCCACCATATAACACACGGAGAATATTACATGTAACATTATTTAT
TGATGAATCAATGGAGGCCAAAGGGAAACAAC