Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0587100-00
CDS Infomation	cds chromosome:IRGSP-1.0:11:22228797:22230884:-1 gene:Os11g0587100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os11t0587100-00)
Sequence	ATGTCCGCCGCGGGATACCGGTACCAGGCGCTCAAGGAAGCCCTAGCCGCCGCCATCTCC GGCCACGACCTCGCCCGCCACCACGCCGCCGCCGACCACCGCAGGCCGCACGCGCTCGCC GTCGTAGCAGGGCTCGCCTCCAACGGCTACGTCGCGTCCCTCCTCGTCTCCCGCTACTTC CGCCTCGGGGACGCCGGCGCCGCCCGCAATGTGTTCGACGCCGCGGCGACGGCGGCGGCG CCGCAGAAGGCGCTCCTCTACAATGCCATGCTCCGCGGGTACCTCGCGGGTGGCCTCCCG CGGATGGCGGTGGGGATCTTCGGGGAGATGGCGGCGGCGGCGTGCCTTCCCGACCGCCAC ACGTACCACCTCGCCGTGGCGGCGTGCGCGCGGGCGTCGGAGTTCGAGGTCGGCTGGCGT ATCGGGGCGGAGGCCGCTGCGAAAGGGTTCGCGTCCGACCTCCTCGTCGCGACGGCGCTG ATCGGGATGTATGCTGAAGCTGGGGATATGGGCGCCGCTCGTAAGGTGTTCGATGGAATG CCACAGCGGGATGCTGTGGCGTGGAATGCGGTGATTGCTGGCTATGCACGTGGAGGACAT CTGCGCGAGGTCGTCGAGCTGTTTATGAGGATGAGGTCTGTGGATGTTGTGCTCCCGACT GAGGCGACACTGGTGACCCTAGTTTCTGGTTATGCAGGTTTTGGTTCCTGGGAGGGCCGT GGTATGATGCACACCATTGTAATCAAGCTTGGCTTCCAGCTTAATCTCTTTGTTTCCAAT GCTCTCCTTGATCTGTATGTCGAGTTTGGCTGTTTGAGAGAGGCTGTGATGTTGTTTCGT CAGATGGCGGTGAAAGATTCTGTCACTTGGAGTGCAATGATTGGTGGGCTTGTTCGGAAT GGAAGACCGGATTCCGCTCTTAAGCTATTCCGTTGGATGGTGACAAACTCGACAGTTTTG GTCACTAGGTCTATTTTGCTCAATGTGATTATGGCCTGCGCTGAGTTGGGGGAGTGGAGA GAAGGAAAATGGGTTGAAGAGAACTATGTGTGCTGCAATGGTTTTGAATTCAAGAGAGAT CCATCTGTGGTAACAGCGTTAATATACATGTATGCAAAGTGCGGAATGTTAGATTCATCA GTCAGTCTTCTATATGGGGTTGCAGAAGTTAGAGATGATGTATTTGCATGGAACGCTATG ATCAAAGGGTGTGGAGAGCTTGGACTAGTGGAAAAGGCAGTTGGATTTGTAGTAGAAATG CAGAAGATAGGCGTTGATCCAGATGCTATTACATACTTGGAGATCCTACCTATGATCTCA TCAATTCCATCACTGAAAACAGGGATGGAAGCACACGCTCAGATTGTCAGAAGAGGTTTC CTGAATGAAAGGGCAATTGCTAACTCACTTGTTAGCATGTATGGTCGATGCGGGAGCCTT AGGCATTCAATTGAAGTCTTTAGCAGGATTGTGGTCAAGGATGTAATCTCTTGGACGTCT ATGATGCAGGTATATGCGTGGAATGGACATGTTAATGAAGTTGTTAAACTTTATGAGGTG ATGAAGAAAACAGAAACAGAACCAAACCACTACACTTTTCTTGCTGTACTATCTGCATGT AAAAACACAGGTCTTGTTGAGGAAGGAATGGAATTGATCAAGTACATGCAAGAGAAGTGT GGCCTAAAACCAGAAATTGAGCATATTTCTTGTGTTGTTGATATGCTCTGCCGTGCAGGA CGTTTGACTGATGCATACCACCTTATTAAATATAATAATTCTGAACACATTAACAATACA ATATTGTGGGGGACGCTGCTAAGCGCTTCCCGTTCATGTGGAGATTTGGTGATCGGAGAA GCAGCAGCCAAACATCTCTTATCTCTTGATCCAGAAAATAGGGCCAACTCTAAGATGCTT GCTGATATTTATGTCTTGCTTGGGAGAAGGGATGACGCTGACAATCTCCTAAGAGTATCG ATGACAAGAGGATTGGACATAAAACCAGGCTGCAGCTGGATGGAAGGTGTCTAA

Peptide Sequence

PEP ID	Os11t0587100-00
PEP Infomation	pep chromosome:IRGSP-1.0:11:22228797:22230884:-1 gene:Os11g0587100 transcript:Os11t0587100-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os11t0587100-00)
Sequence	MSAAGYRYQALKEALAAAISGHDLARHHAAADHRRPHALAVVAGLASNGYVASLLVSRYF RLGDAGAARNVFDAAATAAAPQKALLYNAMLRGYLAGGLPRMAVGIFGEMAAAACLPDRH TYHLAVAACARASEFEVGWRIGAEAAAKGFASDLLVATALIGMYAEAGDMGAARKVFDGM PQRDAVAWNAVIAGYARGGHLREVVELFMRMRSVDVVLPTEATLVTLVSGYAGFGSWEGR GMMHTIVIKLGFQLNLFVSNALLDLYVEFGCLREAVMLFRQMAVKDSVTWSAMIGGLVRN GRPDSALKLFRWMVTNSTVLVTRSILLNVIMACAELGEWREGKWVEENYVCCNGFEFKRD PSVVTALIYMYAKCGMLDSSVSLLYGVAEVRDDVFAWNAMIKGCGELGLVEKAVGFVVEM QKIGVDPDAITYLEILPMISSIPSLKTGMEAHAQIVRRGFLNERAIANSLVSMYGRCGSL RHSIEVFSRIVVKDVISWTSMMQVYAWNGHVNEVVKLYEVMKKTETEPNHYTFLAVLSAC KNTGLVEEGMELIKYMQEKCGLKPEIEHISCVVDMLCRAGRLTDAYHLIKYNNSEHINNT ILWGTLLSASRSCGDLVIGEAAAKHLLSLDPENRANSKMLADIYVLLGRRDDADNLLRVS MTRGLDIKPGCSWMEGV

Transcript Sequence

Transcript ID	Os11t0587100-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:22228797:22230884:-1 gene:Os11g0587100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os11t0587100-00)
Sequence	ATGTCCGCCGCGGGATACCGGTACCAGGCGCTCAAGGAAGCCCTAGCCGCCGCCATCTCC GGCCACGACCTCGCCCGCCACCACGCCGCCGCCGACCACCGCAGGCCGCACGCGCTCGCC GTCGTAGCAGGGCTCGCCTCCAACGGCTACGTCGCGTCCCTCCTCGTCTCCCGCTACTTC CGCCTCGGGGACGCCGGCGCCGCCCGCAATGTGTTCGACGCCGCGGCGACGGCGGCGGCG CCGCAGAAGGCGCTCCTCTACAATGCCATGCTCCGCGGGTACCTCGCGGGTGGCCTCCCG CGGATGGCGGTGGGGATCTTCGGGGAGATGGCGGCGGCGGCGTGCCTTCCCGACCGCCAC ACGTACCACCTCGCCGTGGCGGCGTGCGCGCGGGCGTCGGAGTTCGAGGTCGGCTGGCGT ATCGGGGCGGAGGCCGCTGCGAAAGGGTTCGCGTCCGACCTCCTCGTCGCGACGGCGCTG ATCGGGATGTATGCTGAAGCTGGGGATATGGGCGCCGCTCGTAAGGTGTTCGATGGAATG CCACAGCGGGATGCTGTGGCGTGGAATGCGGTGATTGCTGGCTATGCACGTGGAGGACAT CTGCGCGAGGTCGTCGAGCTGTTTATGAGGATGAGGTCTGTGGATGTTGTGCTCCCGACT GAGGCGACACTGGTGACCCTAGTTTCTGGTTATGCAGGTTTTGGTTCCTGGGAGGGCCGT GGTATGATGCACACCATTGTAATCAAGCTTGGCTTCCAGCTTAATCTCTTTGTTTCCAAT GCTCTCCTTGATCTGTATGTCGAGTTTGGCTGTTTGAGAGAGGCTGTGATGTTGTTTCGT CAGATGGCGGTGAAAGATTCTGTCACTTGGAGTGCAATGATTGGTGGGCTTGTTCGGAAT GGAAGACCGGATTCCGCTCTTAAGCTATTCCGTTGGATGGTGACAAACTCGACAGTTTTG GTCACTAGGTCTATTTTGCTCAATGTGATTATGGCCTGCGCTGAGTTGGGGGAGTGGAGA GAAGGAAAATGGGTTGAAGAGAACTATGTGTGCTGCAATGGTTTTGAATTCAAGAGAGAT CCATCTGTGGTAACAGCGTTAATATACATGTATGCAAAGTGCGGAATGTTAGATTCATCA GTCAGTCTTCTATATGGGGTTGCAGAAGTTAGAGATGATGTATTTGCATGGAACGCTATG ATCAAAGGGTGTGGAGAGCTTGGACTAGTGGAAAAGGCAGTTGGATTTGTAGTAGAAATG CAGAAGATAGGCGTTGATCCAGATGCTATTACATACTTGGAGATCCTACCTATGATCTCA TCAATTCCATCACTGAAAACAGGGATGGAAGCACACGCTCAGATTGTCAGAAGAGGTTTC CTGAATGAAAGGGCAATTGCTAACTCACTTGTTAGCATGTATGGTCGATGCGGGAGCCTT AGGCATTCAATTGAAGTCTTTAGCAGGATTGTGGTCAAGGATGTAATCTCTTGGACGTCT ATGATGCAGGTATATGCGTGGAATGGACATGTTAATGAAGTTGTTAAACTTTATGAGGTG ATGAAGAAAACAGAAACAGAACCAAACCACTACACTTTTCTTGCTGTACTATCTGCATGT AAAAACACAGGTCTTGTTGAGGAAGGAATGGAATTGATCAAGTACATGCAAGAGAAGTGT GGCCTAAAACCAGAAATTGAGCATATTTCTTGTGTTGTTGATATGCTCTGCCGTGCAGGA CGTTTGACTGATGCATACCACCTTATTAAATATAATAATTCTGAACACATTAACAATACA ATATTGTGGGGGACGCTGCTAAGCGCTTCCCGTTCATGTGGAGATTTGGTGATCGGAGAA GCAGCAGCCAAACATCTCTTATCTCTTGATCCAGAAAATAGGGCCAACTCTAAGATGCTT GCTGATATTTATGTCTTGCTTGGGAGAAGGGATGACGCTGACAATCTCCTAAGAGTATCG ATGACAAGAGGATTGGACATAAAACCAGGCTGCAGCTGGATGGAAGGTGTCTAACTGTCT AAAGCTTGCAAATTGCAATACATGTAGAAGGTATAATTAAATATGATT