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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0582100-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:21991920:21994207:-1 gene:Os11g0582100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os11t0582100-01)
Sequence

ATGCTTCCGGGGGTGGAGCTGGCGAGGCGGCGGCGGGTGCACTACCACGGCGACGGGGCG
GCGGCGGGGGCAGGGTTTGGGGAGCACCACCACGGGCACTACAACTACTTCCACCAGCAG
CACCACCGTCAGGCGGTGGCGAGCGCGGAGGCGGGGGCGGGCGCAGGGGGCGAGGTGAGC
CCCGCGGTGGCGGCGCGCATCCGGCTCGAGGAGAAGCTGCGGGGCGCCGCGGCCGCGCCC
TCGTCGTCTCTCTCGAGGTGGGGCAGGCGATTTCGCGAACGAGATGGGAGCACAACCTCC
AGACAACAGAACAACCAGCAAGAGCAGCAGATTCAGCTGCCCACTGAACCCAGGCCTACT
CCCAAACATTCGATGACCATGCTGGAGGCGCCATCAACAAGAAAAGCCCCCCGCCGCGAG
ATGAGGAGGACACTTTCCAAGGCCGATCTCTGCGCTGTGTGCCTCGACGAAGTGCGGGAG
CGACACCAGCGGGTCACCAGGCTACCCTGCTCCCACAAGTACCACTCGGAGTGCGTCCTC
CCCTGGCTGGCCATCCAACCAGACTGCCCCTGCTGCAGGACGCAGGTCCCTTCGGTGGAC
TCCCTCTTTGTAGCTTGA

Peptide Sequence

PEP ID

Os11t0582100-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:21991920:21994207:-1 gene:Os11g0582100 transcript:Os11t0582100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os11t0582100-01)
Sequence

MLPGVELARRRRVHYHGDGAAAGAGFGEHHHGHYNYFHQQHHRQAVASAEAGAGAGGEVS
PAVAARIRLEEKLRGAAAAPSSSLSRWGRRFRERDGSTTSRQQNNQQEQQIQLPTEPRPT
PKHSMTMLEAPSTRKAPRREMRRTLSKADLCAVCLDEVRERHQRVTRLPCSHKYHSECVL
PWLAIQPDCPCCRTQVPSVDSLFVA

Transcript Sequence

Transcript ID

Os11t0582100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:21991920:21994207:-1 gene:Os11g0582100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os11t0582100-01)
Sequence

GTCGCCGTCGCGGAATTTCCTCCGCCATCGCGCGCCCTCGGTATAAATCGCCGGGAGAAA
TTTCTCCGAGCTCTCTCCCACCCACCAACCCCCCATCGAGGAGACGACGACGAGGAGGAG
ATGCTTCCGGGGGTGGAGCTGGCGAGGCGGCGGCGGGTGCACTACCACGGCGACGGGGCG
GCGGCGGGGGCAGGGTTTGGGGAGCACCACCACGGGCACTACAACTACTTCCACCAGCAG
CACCACCGTCAGGCGGTGGCGAGCGCGGAGGCGGGGGCGGGCGCAGGGGGCGAGGTGAGC
CCCGCGGTGGCGGCGCGCATCCGGCTCGAGGAGAAGCTGCGGGGCGCCGCGGCCGCGCCC
TCGTCGTCTCTCTCGAGGTGGGGCAGGCGATTTCGCGAACGAGATGGGAGCACAACCTCC
AGACAACAGAACAACCAGCAAGAGCAGCAGATTCAGCTGCCCACTGAACCCAGGCCTACT
CCCAAACATTCGATGACCATGCTGGAGGCGCCATCAACAAGAAAAGCCCCCCGCCGCGAG
ATGAGGAGGACACTTTCCAAGGCCGATCTCTGCGCTGTGTGCCTCGACGAAGTGCGGGAG
CGACACCAGCGGGTCACCAGGCTACCCTGCTCCCACAAGTACCACTCGGAGTGCGTCCTC
CCCTGGCTGGCCATCCAACCAGACTGCCCCTGCTGCAGGACGCAGGTCCCTTCGGTGGAC
TCCCTCTTTGTAGCTTGATCAGCTTGCTGGAAGATTTGGCATCTTCTTCCTCTGCACAGT
TTCCGAAAGAAAGGAACAAAAAGAAAGGGTTTTCATTGTCTTCAGCAGAACATGAACTGA
CATAGACACCATGACAAAGTTTTGTTCTTCAGTTTTCTCTTC