Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0572100-02
CDS Infomation	cds chromosome:IRGSP-1.0:11:21443125:21452903:1 gene:Os11g0572100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:replication factor C subunit 1, replication factor C1 description:Similar to DNA ligase (EC 6.5.1.2). (Os11t0572100-01);Similar to DNA ligase (EC 6.5.1.2). (Os11t0572100-02);Similar to Replication factor C 110 kDa subunit. (Os11t0572100-03);Similar to Replication factor C 110 kDa subunit. (Os11t0572100-04)
Sequence	ATGTCTTCGGACATCAGGAAATGGTTCATGAAGGCGCAGGACAAGAATGGTGGCGCAGCG AAGCCGGCTGGGACGACGGCGTTGGCGAAGAAGCCCGTGCTCAGCATTCCGGAGAAGCCG TCGGCGGCGCCATCTATGGCGGCTTGTGATCAAGATTGTTCAGCTAGAAGGAAGACTAGC AAGTACTTTGCATCCAAAACAGAAAAGGAGGAAGACACCAGTGCAGGAAAAGGTACCGGG AGAGGTTTGCCTAAAAGAAAACTTCAGAAAGTCAGTGATGAGCTTGAGGATGACATGAAG CCTTTGCCAGCAAAGGAAGTCCATAAAGAAGAAGAAGATGATGATGACGACGACTTTGTG GCACCTTCAAAAAGGAAAACTCCGGTGAAGCCACCACCATCAAAGAAGTTGAAGGGTGCA TCTACTGCTGAAGCTCATGGAAAGACTGGTCTTGATGATGATAACGAGGACAAGATGGAT GAAGACGCTAAGACCCCTTCCAAGGCATCTGGAAGTGGAAGGGGAAGGGGAAGGGGGAGA GGGAGGGGAGGAAGAGGAGCAGGAGCAGCCCATGGAAAGACAATTGGTCTTGATGACGAC GGTGAGGAGGATAAGATGGATGAAGATGCCAAGACCCCTTCCAAAGCAGCTGGAAGGGGA AGGGGAGGAGCCTCTGGGGGAAGAGGGAGAGGAGGGGGTGGGAGAGGCTTCATGAACTTT GGTGAAAGGAAGGATCCTCCTCACAAAGGGGAGAAGGAAGTCCCGGAGGGTGCCCCTGAC TGTTTAACTGGTTTGACATTTGTCATAAGTGGCACTCTTGACAGTCTTGAACGTGAGGAG GCAACTGATCTAATCAAGCGTTATGGAGGCCGTGTGACCGGCTCTATTAGCAAAAAGACG AATTACCTATTGGCTGATGAAGACGTTGGTGGAGTGAAATCAAATAAAGCGAAAGAACTG GGCGTCCCATTCCTAACTGAAGATGGTTTATTTGATATGATTCGGAAATCAAAGCCTGCA AAGGCTACTGTGGCAAAACATCAAAGCGACAAAAATTCAGAAAAGCAGCAAAAATCACCA ATGAAGAGTTCTCCAGTTAAAGTTGAAAGAAGAGATGGTAATCAAATTACCACAGGCAAA AATATTTCACCAAAGAGTAATAAAGGAAGTGCCTCCATTGACAACCAAAAGGTCAACATT GTTGACCGTGGTTCTTTGCAATGGACTGAAAAGTATCGGCCCAAAGTTCCAAATGACATA GTTGGGAACCAATCAATGGTTAAACAGCTTCATGATTGGTTGAGAAGTTGGGAGGACCAA TTCCTTCATTCTGGCCAGAAGGGTAAGGGAAAGAAGCAGGCTGATAGTGGAGCTAAAAAG GCTGTGTTGTTGAGTGGACCTCCAGGTATTGGTAAGACCACAACTGCTAAAGTTGTCAGT CAGATGCTTGGATTGCAGGCTATTGAGGTTAATGCAAGTGATAGCCGTGGTAAGGCAGAC TCTAAGATTGAGAAAGGTGTTGGGGGCAGTACATCAAATTCTATCAAAGAGCTTATTAGT AATGCAACTCTGAATTATAGTAACAACCGATTAAAACGACCCAAGGCTGTACTAGTCATG GATGAAGTTGATGGTATGTCTGCTGGAGATCGTGGTGGTGTTGCTGATCTTATTGCTAGC ATTAAGATGTCCAAGATTCCTATAATTTGCATTTGCAATGACCGTTATAGCCAGAAATTG AAGAGCCTTGTAAATTACTGCTTGCTACTCAACTTCAGAAAACCAACCAAGCAACAGATG GGTAAGAGGTTGATGGAAATTGCCAAGAAGGAAGGTCTTCAAGCTCAAGAGAATGCAATG GAAGAACTTGCAGAAAGAGTACACGGGGATATTCGCATGGCTCTTAACCATTTGCAATAT ATGAGCCTCTCCCAGTCCGTGGTCAAATATGATGATATAAGACAGCGACTTAATAGTAGC ACAAAAGATGAAGATATTTCCCCCTTCACGGCTGTTGACAAGCTGTTTGGTTTTAATGGT GGGAGACTACGGATGGATGAGAGAATTGATTTGAGCATGAGCGATCCTGATTTAGTCCCT CTGATTATCCAGGAAAACTATATCAATTATCGGCCTATCACTGTTGGGAAGGATGACAGT GGAGTTAAAAGAATGAATTTTCTTGCTCGTGCTGCTGAATCTATAGCGGACGCTGATATT GTTAATGTACAAATAAGAAGATATCGACAGTGGCAATTGTCCCAAGCTGCTTGTTTGTCT TCATCTATAGTTCCTGCTGCTTTGATGCATGGGAATAGAGAGATCCTTGAAGCAGGTGAG CGAAACTTCAATAGGTTTGGTGGATGGTTGGGAAAGTACTCGACCACAAATAAAAACATA AGGCTACTGGAAGATGCCCATAGTCATATTCTTGCCTCCCAGCAAGCAAATTTGGACAGG GAGTCATTGAGGCTGGATTACCTCACTCTTCTCTTGAGACAATTGACTGATCCACTGAAG ACAATGCCCAAGGATGAAGCTGTGCAAAAAGTGGTGGAGTTTATGGATACCTACTCTTTA AGCCAGGAAGACTTTGACACAATTGTTGAATTATCAAAATTTAAGGGTCATCCAAATCCT ATGGATGGTATTCAACCAGCTGTTAAAAGTGCCTTAACAAAAGCATACAAACAAGGAAGT AGTTCTCGTGTTGTTCGAGCAGCAGATCTAGTAAATATCCCAGGCATGAAAAAGCCATTA AAGAAACGAGTGGCAGCAATCCTTGAGCCAGTGGGAGAGAGTTTGCCTGAAGAAAATGGA GTAGCGTCATCTGAAGGCGATGAAGAGGATTCCTCTGATGCTGAAAATAATGATGAACTG GTGCCTGGTGACACAAAACCAAAACTGGACCTGCAGAGTGATAAGAAGAAAGGGATCCAA GTGCAGCTCGACCTGAAGAGCAATGGCAATGGCTTGAACTCGAAGAAGATGCCGGCTGGT AGATCAAAAGCTTCTGGCTCTGCTGGGAAGGCTGCTGGAGGCTCAGGTGGGAAGAGGAAG AGGTAA

Peptide Sequence

PEP ID	Os11t0572100-02
PEP Infomation	pep chromosome:IRGSP-1.0:11:21443125:21452903:1 gene:Os11g0572100 transcript:Os11t0572100-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:replication factor C subunit 1, replication factor C1 description:Similar to DNA ligase (EC 6.5.1.2). (Os11t0572100-01);Similar to DNA ligase (EC 6.5.1.2). (Os11t0572100-02);Similar to Replication factor C 110 kDa subunit. (Os11t0572100-03);Similar to Replication factor C 110 kDa subunit. (Os11t0572100-04)
Sequence	MSSDIRKWFMKAQDKNGGAAKPAGTTALAKKPVLSIPEKPSAAPSMAACDQDCSARRKTS KYFASKTEKEEDTSAGKGTGRGLPKRKLQKVSDELEDDMKPLPAKEVHKEEEDDDDDDFV APSKRKTPVKPPPSKKLKGASTAEAHGKTGLDDDNEDKMDEDAKTPSKASGSGRGRGRGR GRGGRGAGAAHGKTIGLDDDGEEDKMDEDAKTPSKAAGRGRGGASGGRGRGGGGRGFMNF GERKDPPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKT NYLLADEDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAKHQSDKNSEKQQKSP MKSSPVKVERRDGNQITTGKNISPKSNKGSASIDNQKVNIVDRGSLQWTEKYRPKVPNDI VGNQSMVKQLHDWLRSWEDQFLHSGQKGKGKKQADSGAKKAVLLSGPPGIGKTTTAKVVS QMLGLQAIEVNASDSRGKADSKIEKGVGGSTSNSIKELISNATLNYSNNRLKRPKAVLVM DEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLLLNFRKPTKQQM GKRLMEIAKKEGLQAQENAMEELAERVHGDIRMALNHLQYMSLSQSVVKYDDIRQRLNSS TKDEDISPFTAVDKLFGFNGGRLRMDERIDLSMSDPDLVPLIIQENYINYRPITVGKDDS GVKRMNFLARAAESIADADIVNVQIRRYRQWQLSQAACLSSSIVPAALMHGNREILEAGE RNFNRFGGWLGKYSTTNKNIRLLEDAHSHILASQQANLDRESLRLDYLTLLLRQLTDPLK TMPKDEAVQKVVEFMDTYSLSQEDFDTIVELSKFKGHPNPMDGIQPAVKSALTKAYKQGS SSRVVRAADLVNIPGMKKPLKKRVAAILEPVGESLPEENGVASSEGDEEDSSDAENNDEL VPGDTKPKLDLQSDKKKGIQVQLDLKSNGNGLNSKKMPAGRSKASGSAGKAAGGSGGKRK R

Transcript Sequence

Transcript ID	Os11t0572100-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:21443125:21452903:1 gene:Os11g0572100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:replication factor C subunit 1, replication factor C1 description:Similar to DNA ligase (EC 6.5.1.2). (Os11t0572100-01);Similar to DNA ligase (EC 6.5.1.2). (Os11t0572100-02);Similar to Replication factor C 110 kDa subunit. (Os11t0572100-03);Similar to Replication factor C 110 kDa subunit. (Os11t0572100-04)
Sequence	AAACCCGCGACCCCCTCTCCTCTTCCCCCTCGCGCGACGACTCTTCCGAAGCACACCCCC GCCGCCGCCCGCCTCCTCCTCCTCCTCCTCCTCCCCTCCATCCCCCCCAACATCCGGTGG TGACTCCGACGAGGAAGCGCCCCAAGAAGCGAGGTGAGGTCGGAGGGAGGGAGGGAGGAA GCAGGGATCGGCTCGCTCGCTCGCTCGCTTCCGCCCCCAACCTTAAACCCTAGGGCCCCC GCACTTCACCTGCTCATCGGCTCGAATCTTGCCGCGCTCGGGTGTGGGGACCGGGAAGAT CCGGGTCTTCTCTTTTCGGGGGATTGGAGATGTCTTCGGACATCAGGAAATGGTTCATGA AGGCGCAGGACAAGAATGGTGGCGCAGCGAAGCCGGCTGGGACGACGGCGTTGGCGAAGA AGCCCGTGCTCAGCATTCCGGAGAAGCCGTCGGCGGCGCCATCTATGGCGGCTTGTGATC AAGATTGTTCAGCTAGAAGGAAGACTAGCAAGTACTTTGCATCCAAAACAGAAAAGGAGG AAGACACCAGTGCAGGAAAAGGTACCGGGAGAGGTTTGCCTAAAAGAAAACTTCAGAAAG TCAGTGATGAGCTTGAGGATGACATGAAGCCTTTGCCAGCAAAGGAAGTCCATAAAGAAG AAGAAGATGATGATGACGACGACTTTGTGGCACCTTCAAAAAGGAAAACTCCGGTGAAGC CACCACCATCAAAGAAGTTGAAGGGTGCATCTACTGCTGAAGCTCATGGAAAGACTGGTC TTGATGATGATAACGAGGACAAGATGGATGAAGACGCTAAGACCCCTTCCAAGGCATCTG GAAGTGGAAGGGGAAGGGGAAGGGGGAGAGGGAGGGGAGGAAGAGGAGCAGGAGCAGCCC ATGGAAAGACAATTGGTCTTGATGACGACGGTGAGGAGGATAAGATGGATGAAGATGCCA AGACCCCTTCCAAAGCAGCTGGAAGGGGAAGGGGAGGAGCCTCTGGGGGAAGAGGGAGAG GAGGGGGTGGGAGAGGCTTCATGAACTTTGGTGAAAGGAAGGATCCTCCTCACAAAGGGG AGAAGGAAGTCCCGGAGGGTGCCCCTGACTGTTTAACTGGTTTGACATTTGTCATAAGTG GCACTCTTGACAGTCTTGAACGTGAGGAGGCAACTGATCTAATCAAGCGTTATGGAGGCC GTGTGACCGGCTCTATTAGCAAAAAGACGAATTACCTATTGGCTGATGAAGACGTTGGTG GAGTGAAATCAAATAAAGCGAAAGAACTGGGCGTCCCATTCCTAACTGAAGATGGTTTAT TTGATATGATTCGGAAATCAAAGCCTGCAAAGGCTACTGTGGCAAAACATCAAAGCGACA AAAATTCAGAAAAGCAGCAAAAATCACCAATGAAGAGTTCTCCAGTTAAAGTTGAAAGAA GAGATGGTAATCAAATTACCACAGGCAAAAATATTTCACCAAAGAGTAATAAAGGAAGTG CCTCCATTGACAACCAAAAGGTCAACATTGTTGACCGTGGTTCTTTGCAATGGACTGAAA AGTATCGGCCCAAAGTTCCAAATGACATAGTTGGGAACCAATCAATGGTTAAACAGCTTC ATGATTGGTTGAGAAGTTGGGAGGACCAATTCCTTCATTCTGGCCAGAAGGGTAAGGGAA AGAAGCAGGCTGATAGTGGAGCTAAAAAGGCTGTGTTGTTGAGTGGACCTCCAGGTATTG GTAAGACCACAACTGCTAAAGTTGTCAGTCAGATGCTTGGATTGCAGGCTATTGAGGTTA ATGCAAGTGATAGCCGTGGTAAGGCAGACTCTAAGATTGAGAAAGGTGTTGGGGGCAGTA CATCAAATTCTATCAAAGAGCTTATTAGTAATGCAACTCTGAATTATAGTAACAACCGAT TAAAACGACCCAAGGCTGTACTAGTCATGGATGAAGTTGATGGTATGTCTGCTGGAGATC GTGGTGGTGTTGCTGATCTTATTGCTAGCATTAAGATGTCCAAGATTCCTATAATTTGCA TTTGCAATGACCGTTATAGCCAGAAATTGAAGAGCCTTGTAAATTACTGCTTGCTACTCA ACTTCAGAAAACCAACCAAGCAACAGATGGGTAAGAGGTTGATGGAAATTGCCAAGAAGG AAGGTCTTCAAGCTCAAGAGAATGCAATGGAAGAACTTGCAGAAAGAGTACACGGGGATA TTCGCATGGCTCTTAACCATTTGCAATATATGAGCCTCTCCCAGTCCGTGGTCAAATATG ATGATATAAGACAGCGACTTAATAGTAGCACAAAAGATGAAGATATTTCCCCCTTCACGG CTGTTGACAAGCTGTTTGGTTTTAATGGTGGGAGACTACGGATGGATGAGAGAATTGATT TGAGCATGAGCGATCCTGATTTAGTCCCTCTGATTATCCAGGAAAACTATATCAATTATC GGCCTATCACTGTTGGGAAGGATGACAGTGGAGTTAAAAGAATGAATTTTCTTGCTCGTG CTGCTGAATCTATAGCGGACGCTGATATTGTTAATGTACAAATAAGAAGATATCGACAGT GGCAATTGTCCCAAGCTGCTTGTTTGTCTTCATCTATAGTTCCTGCTGCTTTGATGCATG GGAATAGAGAGATCCTTGAAGCAGGTGAGCGAAACTTCAATAGGTTTGGTGGATGGTTGG GAAAGTACTCGACCACAAATAAAAACATAAGGCTACTGGAAGATGCCCATAGTCATATTC TTGCCTCCCAGCAAGCAAATTTGGACAGGGAGTCATTGAGGCTGGATTACCTCACTCTTC TCTTGAGACAATTGACTGATCCACTGAAGACAATGCCCAAGGATGAAGCTGTGCAAAAAG TGGTGGAGTTTATGGATACCTACTCTTTAAGCCAGGAAGACTTTGACACAATTGTTGAAT TATCAAAATTTAAGGGTCATCCAAATCCTATGGATGGTATTCAACCAGCTGTTAAAAGTG CCTTAACAAAAGCATACAAACAAGGAAGTAGTTCTCGTGTTGTTCGAGCAGCAGATCTAG TAAATATCCCAGGCATGAAAAAGCCATTAAAGAAACGAGTGGCAGCAATCCTTGAGCCAG TGGGAGAGAGTTTGCCTGAAGAAAATGGAGTAGCGTCATCTGAAGGCGATGAAGAGGATT CCTCTGATGCTGAAAATAATGATGAACTGGTGCCTGGTGACACAAAACCAAAACTGGACC TGCAGAGTGATAAGAAGAAAGGGATCCAAGTGCAGCTCGACCTGAAGAGCAATGGCAATG GCTTGAACTCGAAGAAGATGCCGGCTGGTAGATCAAAAGCTTCTGGCTCTGCTGGGAAGG CTGCTGGAGGCTCAGGTGGGAAGAGGAAGAGGTAAACGTCCGCCGGCCGCCGTCATTTAG TCGGTGGTGAATCTACATGAACATCCTCTGATATTCTGGGGCAGAATGCGGTTCAAATTT TCTTGCTTGTACATAAGTCCCAATCATCTTTGTAGGCAGTAGTAGGCAATTGGTATCTGC TCCAGATATTTTGTTTCCTCCCACTTGTATGAGCTTCATTTCGCTCTACTGGCATTTGGC CAGTTTTCAGCTTTGCAAGACAACGTCCATTATTGTTGACTTCCGTTCAATGAAATTGTG TCATGTTTGTTGTCC