Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0568600-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:21188307:21197806:1 gene:Os11g0568600 gene_biotype:protein_coding transcript_biotype:protein_coding description:THUMP domain containing protein. (Os11t0568600-01);Similar to THUMP domain containing protein. (Os11t0568600-02)
Sequence

ATGGCCTCCGGCGAGGGCAAGCCGAACCCCGGCGGCGGCGGCGGCGTGGTGGCCAAGGGG
AGGAAGCGGAAGTACCTCCCCCACGGGAAGCCGGTGAGGAAGGGGGCGTACCCGCTGCGC
CCCGGGGTGCAGGGCTTCTTCCTCACCTGCGACGGCGGCCGCGAGCGCCAGGCCACCCGC
GAGGCCCTCTCCCTGCTCGACTCCTTCTATGAAGATCTGGTGGATGGGAAAGGATCAGAT
GGGAAGCCCAAAAGCATCCCTGATAAACCATTGAACAAAAAAATTACGTTTGCGGATTCC
GATTCTTCGGATGATGAGGAAGAAGATCATTCAGGGGAGGTGACTGATGACACAAACAAT
GCAGACAAAGGTGAAACCACACCTTCTGAGCAGCAGAAAGAGGTGTCTGACACCCCTGTA
GTTCCCAGCAAGGACAATGAGGAACAAACAGATAATGCTGATGAATCAAAACTAAAGAAG
CAGCGCGTACAAGATCCTCCGATATCTGAACAGACAGAACCAAAAGAGCCTACTGATAAG
CCAACAGAGTCCACTGATAAACCAAAAGGGTCCAATGATAAACCCATTGATGATTTGATT
GATGAGGATTTGAAGGAGCTTGGGGATAGGAAAAAGAGGCTCTTCGCAACCCTTGATTCA
GGCTGCAACGGTTGCATCTTCATTCAAATGCACAAAAGAGATGGAGACCCTGGTCCAGTT
GAGATCGTACAGAATATGATGTCATCAGCTGCTTCAACTCGTAAACATATGTCCAGATTT
ATTCTGAGGTTTTTGCCCACTGAGGTGACATGTTATGCATCAGAAGAGGAAATAACAAAA
GCAATTAGTCCACTTGTTGAAAAGTACTTTCCAAAGGAATCTTCTTCGGTATATAAGTTT
GCTGTGTTATATGAAGCAAGGTCGAACACAGGTATTGATAGGATGAAAATTATCAACGCG
GTAGCAAAATCTGTACCTCAACCTCACAAGGTTGATCTCAGCAGTCCAGACAGGACTATT
ATTGTCCAGATAGCTAAGACTATATGCATGATTGGGGTGGTCGAGAGGTACAAAGAGCTC
GCAAAGTTCAACTTAAGGCAGCTGACCTCACCACCGGAGAAGTAG

Peptide Sequence

PEP ID

Os11t0568600-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:21188307:21197806:1 gene:Os11g0568600 transcript:Os11t0568600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:THUMP domain containing protein. (Os11t0568600-01);Similar to THUMP domain containing protein. (Os11t0568600-02)
Sequence

MASGEGKPNPGGGGGVVAKGRKRKYLPHGKPVRKGAYPLRPGVQGFFLTCDGGRERQATR
EALSLLDSFYEDLVDGKGSDGKPKSIPDKPLNKKITFADSDSSDDEEEDHSGEVTDDTNN
ADKGETTPSEQQKEVSDTPVVPSKDNEEQTDNADESKLKKQRVQDPPISEQTEPKEPTDK
PTESTDKPKGSNDKPIDDLIDEDLKELGDRKKRLFATLDSGCNGCIFIQMHKRDGDPGPV
EIVQNMMSSAASTRKHMSRFILRFLPTEVTCYASEEEITKAISPLVEKYFPKESSSVYKF
AVLYEARSNTGIDRMKIINAVAKSVPQPHKVDLSSPDRTIIVQIAKTICMIGVVERYKEL
AKFNLRQLTSPPEK

Transcript Sequence

Transcript ID

Os11t0568600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:21188307:21197806:1 gene:Os11g0568600 gene_biotype:protein_coding transcript_biotype:protein_coding description:THUMP domain containing protein. (Os11t0568600-01);Similar to THUMP domain containing protein. (Os11t0568600-02)
Sequence

CTCGTCGGCCTCCCCTCCCCTCCCCTCTCCCCCCAAAACCCCACCTCGCCGGAAACCCTA
GAGAAACCCACGAGATGGCCTCCGGCGAGGGCAAGCCGAACCCCGGCGGCGGCGGCGGCG
TGGTGGCCAAGGGGAGGAAGCGGAAGTACCTCCCCCACGGGAAGCCGGTGAGGAAGGGGG
CGTACCCGCTGCGCCCCGGGGTGCAGGGCTTCTTCCTCACCTGCGACGGCGGCCGCGAGC
GCCAGGCCACCCGCGAGGCCCTCTCCCTGCTCGACTCCTTCTATGAAGATCTGGTGGATG
GGAAAGGATCAGATGGGAAGCCCAAAAGCATCCCTGATAAACCATTGAACAAAAAAATTA
CGTTTGCGGATTCCGATTCTTCGGATGATGAGGAAGAAGATCATTCAGGGGAGGTGACTG
ATGACACAAACAATGCAGACAAAGGTGAAACCACACCTTCTGAGCAGCAGAAAGAGGTGT
CTGACACCCCTGTAGTTCCCAGCAAGGACAATGAGGAACAAACAGATAATGCTGATGAAT
CAAAACTAAAGAAGCAGCGCGTACAAGATCCTCCGATATCTGAACAGACAGAACCAAAAG
AGCCTACTGATAAGCCAACAGAGTCCACTGATAAACCAAAAGGGTCCAATGATAAACCCA
TTGATGATTTGATTGATGAGGATTTGAAGGAGCTTGGGGATAGGAAAAAGAGGCTCTTCG
CAACCCTTGATTCAGGCTGCAACGGTTGCATCTTCATTCAAATGCACAAAAGAGATGGAG
ACCCTGGTCCAGTTGAGATCGTACAGAATATGATGTCATCAGCTGCTTCAACTCGTAAAC
ATATGTCCAGATTTATTCTGAGGTTTTTGCCCACTGAGGTGACATGTTATGCATCAGAAG
AGGAAATAACAAAAGCAATTAGTCCACTTGTTGAAAAGTACTTTCCAAAGGAATCTTCTT
CGGTATATAAGTTTGCTGTGTTATATGAAGCAAGGTCGAACACAGGTATTGATAGGATGA
AAATTATCAACGCGGTAGCAAAATCTGTACCTCAACCTCACAAGGTTGATCTCAGCAGTC
CAGACAGGACTATTATTGTCCAGATAGCTAAGACTATATGCATGATTGGGGTGGTCGAGA
GGTACAAAGAGCTCGCAAAGTTCAACTTAAGGCAGCTGACCTCACCACCGGAGAAGTAGC
CAATTGACCAGCTTGAATTAGATTCGGCAGCAGTTGGTTAGTTGTTGGTTGAGCCGTGAA
AATCACTATTAAACCAAGATTTCATTGTATCCATCAAAGCCTGGAAATCGTTGGAAAGCA
ACATGGAATGTTTAACGCTTGACAGTGCAATTTTGGAATTGTTTAATTATTACTGCCGCA
GTCGGTCCAATAAATTTCGTCAAGGTTCTCGCTATCTAAATACATACAGTGCATGTGGTA
CT