Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0558900-01
CDS Infomation	cds chromosome:IRGSP-1.0:11:20770062:20773259:1 gene:Os11g0558900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Leucine-rich repeat, N-terminal domain containing protein. (Os11t0558900-01)
Sequence	ATGCTCATGCGTCATCCGACCATCGCCGCCGCCGCCGCCGCCGCCGCCTCCATCCTCCTC CTCATGATCGCCGCCGATGGCCAGGCGGCGACGACGACACCGCCATCACCACCACCTGCA GCCATCGGCAACTACTGCAAACCGCGCGAGAGAGACGCGCTGCTGGCGTTCAAGGAAGGC GTCACCGACGACCCTGCAGGCCTCCTCGCCTCTTGGCGACGAGGTGGCGGTCAGCTGCAG GAGGATTGCTGCCAATGGCGAGGCGTCCGGTGCAGCAACCGCACCGGCCATGTCGTCAAG CTCCGCCTCCGCAACGACCACGCCGGAACAGCGCTGGCCGGCGAGATAGGCCAGTCTCTG ATCTCGCTGGAGCATCTCAGGTACCTCGATCTCAGCATGAACAACCTTGCAGGTTCCACT GGACATGTCCCTGAGTTCTTGGGCTCTTTCAGAAGCCTGAGATATCTGAATCTATCTGGG ATAGTGTTCTCCGGCATGGTGCCGCCTCAGCTCGGTAACCTTTCGAACTTGCGATATCTC GATCTCTCCAGGATAAGATTATCCGGCATGGTTCCATTTCTGTACATTAATGATGGTTCA TGGTTAGCACACTTGTCCAATTTGCAATATCTGAAACTTGATGGGGTAAACCTTAGCACA GTAGTTGATTGGCCACATGTTCTGAACATGATCCCTTCTCTGAAGATTGTTAGCCTTTCT TCTTGCTCACTTCAGAGTGCAAACCAGTCTCTCCCAGAGCTTAGTTTCAAGGAACTTGAG ATGCTTGATCTTTCCAACAATGATTTTAACCACCCAGCTGAGTCTAGTTGGATTTGGAAC CTGACATCTCTCAAGCATCTCAATCTTAGCTCGACTAGTTTGTACGGTGATATTCCGCAA GCGCTAGGAAACATGCTGTCCCTCCAAGTTCTTGATTTCTCATTTGATGATCATAAGGAT AGCATGGGCATGAGCGTGTCGAAAAATGGCAAGATGGGCACCATGAAAGCAAACTTGAAG AATCTATGCAATTTGGAAGTTCTAGACCTCGATTGTAGGCTAGAATATGGAAATATTATG GATATATTTCAGAGTTTGCCACAGTGTTCACCCAGCAAACTGAAGGAAGTTCATTTGGCT GGCAACAGTTTAACCGGGATGCTACCAAATTGGATTGGAAGGCTAACAAGCTTAGTCACT CTTGACCTCTTCAATAACAGCATCACTGGACAGGTGCCTTCTGAAATAGGTATGCTCACA AATCTGAGGAATTTGTACCTACATTTCAATAACATGAGTGGTACCATCACAGAGAAGCAC TTTGCGCACCTGACGAGCTTGAAGTCGATATATTTGTGTTACAATCATTTGAAGATTGTG ATGGATCCTCAGTGGTTACCTCCCTTCAAATTAGAGAAGGCTTACTTTGCATCTATTACG ATGGGCCCCTCATTTCCTAGATGGCTTCAATCACAGGTTGATATTGTCGCACTTGCTATG AATGATGCAGGCATAAATGATACATTCCCAGACTGGTTCTCTACAACCTTTTCAAAGGCC AAGTTGTTGGAATTTCCCGGTAATCAAATCAGTGGTGGATTGCCAACAAATATGGAAAAC ATGTCATTGGAAAAATTATATCTGAAATCGAACCAAATAGCGGGTCTGATTCCTCGCATG CCGCGAAACCTCACTACATTAGATTTATCAAACAACTCATTGTCAGGACCTCTGCCACTA AATATTGGATCTCCAAAACTAGCTGAGTTGAATCTGTTATCCAACCGTATCACCGGGAAT GTTCCACAATCTATTTGTGAACTGCAGAATTTACATGGCCTAGACTTATCCAACAATCTA CTTGACGGAGAGTTTCCTCAATGTTCTGGGATGAGCATGATGTCATTTTTTCGTCTGAGT AACAACAGCTTTTCTGGCAACTTCCCATCTTTTCTTCAGGGTTGGACAGAGTTAAGCTTC CTTGATCTTTCATGGAATAAGTTCTCTGGGAATTTGCCTACATGGATTGGAAATTTCAGC AAGCTAGAAATTCTGCGGCTTAAGCATAACATGTTCTCTGGAAATATTCCTGCCAGCATC ACCAAACTTGGAAATCTTTCTCATTTGGATCTTGCTAGCAATAGTATATCAGGTCCCCTG CCTCAGTATTTGGCAAATTTGACAGGAATGGTTCCGAAGCAATATTATACGAACGAGCAT GAAGAGAGACTATCTGGATGTGACTACAAATCTCTTGTGACCATGAAGGGGCTGGAACTT GAGTATGATGAAGAAAATGTAACTGTGGTGACCATTGATTTGTCCTCAAATCTTTTGACC GGTGTGATTCCTGAAGACATTACTTATCTTCATAGATTGATAAATCTGAATCTATCGAGT AACTATTTGAGTGGAAAAATTCCATATTCGATTGGGAACATGCAGTCATTGGAATCGCTC GACCTCTCGAAGAACATGCTCTATGGTGAAATCCCACAAAGTTTGTCTGATTTATCGTCT TTAAGTTTTCTGAACCTATCTTATAACAATCTTGTGGGAGGAATACCATCAGGGACACAA CTTGGCACCCTCTATGATCAAAACCATCATCTGTATGATGGCAATGATGGTCTTTGTGGG CCTCCTCTCCAAAAAAGCTGTTATAAAAGCGATGCATCAGAGCAAGGTCACCTGATGAGA AGTAAACAAGGTTTTGACATAGGGCCATTTTCCATTGGAGTTGTGATGGGATTTATGGCA GGTCTCTGGATTGTCTTCTATGCCCTTTTGTTCAGGAAATCTTGGAGGGTTGCTTACTTC TGTCTCTTGGACAAGGTGTATGATGAGGTTTGTGTGATTGCGGTTGTTGGTTGGGCAAGA TTGACAGGAAGAACAGATCCGAGATTGCTGATGTCGCATGTCTCATGGTCATCCATCGAC TCTGACGAATCCTATGAATAG

Peptide Sequence

PEP ID	Os11t0558900-01
PEP Infomation	pep chromosome:IRGSP-1.0:11:20770062:20773259:1 gene:Os11g0558900 transcript:Os11t0558900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Leucine-rich repeat, N-terminal domain containing protein. (Os11t0558900-01)
Sequence	MLMRHPTIAAAAAAAASILLLMIAADGQAATTTPPSPPPAAIGNYCKPRERDALLAFKEG VTDDPAGLLASWRRGGGQLQEDCCQWRGVRCSNRTGHVVKLRLRNDHAGTALAGEIGQSL ISLEHLRYLDLSMNNLAGSTGHVPEFLGSFRSLRYLNLSGIVFSGMVPPQLGNLSNLRYL DLSRIRLSGMVPFLYINDGSWLAHLSNLQYLKLDGVNLSTVVDWPHVLNMIPSLKIVSLS SCSLQSANQSLPELSFKELEMLDLSNNDFNHPAESSWIWNLTSLKHLNLSSTSLYGDIPQ ALGNMLSLQVLDFSFDDHKDSMGMSVSKNGKMGTMKANLKNLCNLEVLDLDCRLEYGNIM DIFQSLPQCSPSKLKEVHLAGNSLTGMLPNWIGRLTSLVTLDLFNNSITGQVPSEIGMLT NLRNLYLHFNNMSGTITEKHFAHLTSLKSIYLCYNHLKIVMDPQWLPPFKLEKAYFASIT MGPSFPRWLQSQVDIVALAMNDAGINDTFPDWFSTTFSKAKLLEFPGNQISGGLPTNMEN MSLEKLYLKSNQIAGLIPRMPRNLTTLDLSNNSLSGPLPLNIGSPKLAELNLLSNRITGN VPQSICELQNLHGLDLSNNLLDGEFPQCSGMSMMSFFRLSNNSFSGNFPSFLQGWTELSF LDLSWNKFSGNLPTWIGNFSKLEILRLKHNMFSGNIPASITKLGNLSHLDLASNSISGPL PQYLANLTGMVPKQYYTNEHEERLSGCDYKSLVTMKGLELEYDEENVTVVTIDLSSNLLT GVIPEDITYLHRLINLNLSSNYLSGKIPYSIGNMQSLESLDLSKNMLYGEIPQSLSDLSS LSFLNLSYNNLVGGIPSGTQLGTLYDQNHHLYDGNDGLCGPPLQKSCYKSDASEQGHLMR SKQGFDIGPFSIGVVMGFMAGLWIVFYALLFRKSWRVAYFCLLDKVYDEVCVIAVVGWAR LTGRTDPRLLMSHVSWSSIDSDESYE

Transcript Sequence

Transcript ID	Os11t0558900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:20770062:20773259:1 gene:Os11g0558900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Leucine-rich repeat, N-terminal domain containing protein. (Os11t0558900-01)
Sequence	ATACCAAAACACACAGTGAACCAGCATCTCACACTGCAGCTAATCAATCACTTAGCCATG CTCATGCGTCATCCGACCATCGCCGCCGCCGCCGCCGCCGCCGCCTCCATCCTCCTCCTC ATGATCGCCGCCGATGGCCAGGCGGCGACGACGACACCGCCATCACCACCACCTGCAGCC ATCGGCAACTACTGCAAACCGCGCGAGAGAGACGCGCTGCTGGCGTTCAAGGAAGGCGTC ACCGACGACCCTGCAGGCCTCCTCGCCTCTTGGCGACGAGGTGGCGGTCAGCTGCAGGAG GATTGCTGCCAATGGCGAGGCGTCCGGTGCAGCAACCGCACCGGCCATGTCGTCAAGCTC CGCCTCCGCAACGACCACGCCGGAACAGCGCTGGCCGGCGAGATAGGCCAGTCTCTGATC TCGCTGGAGCATCTCAGGTACCTCGATCTCAGCATGAACAACCTTGCAGGTTCCACTGGA CATGTCCCTGAGTTCTTGGGCTCTTTCAGAAGCCTGAGATATCTGAATCTATCTGGGATA GTGTTCTCCGGCATGGTGCCGCCTCAGCTCGGTAACCTTTCGAACTTGCGATATCTCGAT CTCTCCAGGATAAGATTATCCGGCATGGTTCCATTTCTGTACATTAATGATGGTTCATGG TTAGCACACTTGTCCAATTTGCAATATCTGAAACTTGATGGGGTAAACCTTAGCACAGTA GTTGATTGGCCACATGTTCTGAACATGATCCCTTCTCTGAAGATTGTTAGCCTTTCTTCT TGCTCACTTCAGAGTGCAAACCAGTCTCTCCCAGAGCTTAGTTTCAAGGAACTTGAGATG CTTGATCTTTCCAACAATGATTTTAACCACCCAGCTGAGTCTAGTTGGATTTGGAACCTG ACATCTCTCAAGCATCTCAATCTTAGCTCGACTAGTTTGTACGGTGATATTCCGCAAGCG CTAGGAAACATGCTGTCCCTCCAAGTTCTTGATTTCTCATTTGATGATCATAAGGATAGC ATGGGCATGAGCGTGTCGAAAAATGGCAAGATGGGCACCATGAAAGCAAACTTGAAGAAT CTATGCAATTTGGAAGTTCTAGACCTCGATTGTAGGCTAGAATATGGAAATATTATGGAT ATATTTCAGAGTTTGCCACAGTGTTCACCCAGCAAACTGAAGGAAGTTCATTTGGCTGGC AACAGTTTAACCGGGATGCTACCAAATTGGATTGGAAGGCTAACAAGCTTAGTCACTCTT GACCTCTTCAATAACAGCATCACTGGACAGGTGCCTTCTGAAATAGGTATGCTCACAAAT CTGAGGAATTTGTACCTACATTTCAATAACATGAGTGGTACCATCACAGAGAAGCACTTT GCGCACCTGACGAGCTTGAAGTCGATATATTTGTGTTACAATCATTTGAAGATTGTGATG GATCCTCAGTGGTTACCTCCCTTCAAATTAGAGAAGGCTTACTTTGCATCTATTACGATG GGCCCCTCATTTCCTAGATGGCTTCAATCACAGGTTGATATTGTCGCACTTGCTATGAAT GATGCAGGCATAAATGATACATTCCCAGACTGGTTCTCTACAACCTTTTCAAAGGCCAAG TTGTTGGAATTTCCCGGTAATCAAATCAGTGGTGGATTGCCAACAAATATGGAAAACATG TCATTGGAAAAATTATATCTGAAATCGAACCAAATAGCGGGTCTGATTCCTCGCATGCCG CGAAACCTCACTACATTAGATTTATCAAACAACTCATTGTCAGGACCTCTGCCACTAAAT ATTGGATCTCCAAAACTAGCTGAGTTGAATCTGTTATCCAACCGTATCACCGGGAATGTT CCACAATCTATTTGTGAACTGCAGAATTTACATGGCCTAGACTTATCCAACAATCTACTT GACGGAGAGTTTCCTCAATGTTCTGGGATGAGCATGATGTCATTTTTTCGTCTGAGTAAC AACAGCTTTTCTGGCAACTTCCCATCTTTTCTTCAGGGTTGGACAGAGTTAAGCTTCCTT GATCTTTCATGGAATAAGTTCTCTGGGAATTTGCCTACATGGATTGGAAATTTCAGCAAG CTAGAAATTCTGCGGCTTAAGCATAACATGTTCTCTGGAAATATTCCTGCCAGCATCACC AAACTTGGAAATCTTTCTCATTTGGATCTTGCTAGCAATAGTATATCAGGTCCCCTGCCT CAGTATTTGGCAAATTTGACAGGAATGGTTCCGAAGCAATATTATACGAACGAGCATGAA GAGAGACTATCTGGATGTGACTACAAATCTCTTGTGACCATGAAGGGGCTGGAACTTGAG TATGATGAAGAAAATGTAACTGTGGTGACCATTGATTTGTCCTCAAATCTTTTGACCGGT GTGATTCCTGAAGACATTACTTATCTTCATAGATTGATAAATCTGAATCTATCGAGTAAC TATTTGAGTGGAAAAATTCCATATTCGATTGGGAACATGCAGTCATTGGAATCGCTCGAC CTCTCGAAGAACATGCTCTATGGTGAAATCCCACAAAGTTTGTCTGATTTATCGTCTTTA AGTTTTCTGAACCTATCTTATAACAATCTTGTGGGAGGAATACCATCAGGGACACAACTT GGCACCCTCTATGATCAAAACCATCATCTGTATGATGGCAATGATGGTCTTTGTGGGCCT CCTCTCCAAAAAAGCTGTTATAAAAGCGATGCATCAGAGCAAGGTCACCTGATGAGAAGT AAACAAGGTTTTGACATAGGGCCATTTTCCATTGGAGTTGTGATGGGATTTATGGCAGGT CTCTGGATTGTCTTCTATGCCCTTTTGTTCAGGAAATCTTGGAGGGTTGCTTACTTCTGT CTCTTGGACAAGGTGTATGATGAGGTTTGTGTGATTGCGGTTGTTGGTTGGGCAAGATTG ACAGGAAGAACAGATCCGAGATTGCTGATGTCGCATGTCTCATGGTCATCCATCGACTCT GACGAATCCTATGAATAGATGAAGATGAAAAAGCTGAAGCAGGTGTAAGACTATTAGTTG GGTTGTATATTTTGTCATGTATGGAGCTTATTAGAGCAAGTACCCTAAATGCATATGATG CATAGATCTACAATGATGTGTATATATCTGTTTGTACTGGTACAGTTGTGTAGTGTGTCA GAAATCACCCTTCAGACT