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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0557900-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:20729532:20731534:1 gene:Os11g0557900 gene_biotype:protein_coding transcript_biotype:protein_coding description:ARP2/3 complex 16 kDa subunit (p16-Arc) family protein. (Os11t0557900-01)
Sequence

ATGGCTTCGTCGGCGGCGGCCTACCTCGACGCCGACGAGAACCTCGAGGCCATCATCTCC
CGCATCGAGCAGAAGTCCCGCAAGATCGAGACCCTCCTCAAGCAGTCGAAGCCGGTGGAG
GCCCTCAAGACGGCGCTCGAGGGGACGCCCCTCAAGACCCGCGACGAGCGATGCAAGTCG
GCGAACTGGATCGTGGTGCACCGCGCGATGATGGCGATCAGGGACGTCGACGGCATGTTC
AACTCGCTGGATCCCGAGTACTACGACATCCTGATGAAGTACCTGTACAGAGGTTTGTCA
ACAGGGGATCGGCCAACATGTGACCAGTGCCTCAAAATTCATGAAAAACTCACCGAGAAA
GCAGGCTTAGGATGTATATTGCGCTCACTTGCTGATACCGTAAACACCGTGTGA

Peptide Sequence

PEP ID

Os11t0557900-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:20729532:20731534:1 gene:Os11g0557900 transcript:Os11t0557900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:ARP2/3 complex 16 kDa subunit (p16-Arc) family protein. (Os11t0557900-01)
Sequence

MASSAAAYLDADENLEAIISRIEQKSRKIETLLKQSKPVEALKTALEGTPLKTRDERCKS
ANWIVVHRAMMAIRDVDGMFNSLDPEYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTEK
AGLGCILRSLADTVNTV

Transcript Sequence

Transcript ID

Os11t0557900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:20729532:20731534:1 gene:Os11g0557900 gene_biotype:protein_coding transcript_biotype:protein_coding description:ARP2/3 complex 16 kDa subunit (p16-Arc) family protein. (Os11t0557900-01)
Sequence

AGGGCCAACACACACCCAGACGCAAAATCGCCCTCCTCGTCGCCTGCCGGCGAGATGGCT
TCGTCGGCGGCGGCCTACCTCGACGCCGACGAGAACCTCGAGGCCATCATCTCCCGCATC
GAGCAGAAGTCCCGCAAGATCGAGACCCTCCTCAAGCAGTCGAAGCCGGTGGAGGCCCTC
AAGACGGCGCTCGAGGGGACGCCCCTCAAGACCCGCGACGAGCGATGCAAGTCGGCGAAC
TGGATCGTGGTGCACCGCGCGATGATGGCGATCAGGGACGTCGACGGCATGTTCAACTCG
CTGGATCCCGAGTACTACGACATCCTGATGAAGTACCTGTACAGAGGTTTGTCAACAGGG
GATCGGCCAACATGTGACCAGTGCCTCAAAATTCATGAAAAACTCACCGAGAAAGCAGGC
TTAGGATGTATATTGCGCTCACTTGCTGATACCGTAAACACCGTGTGAGTTTCATCTCTG
TGGAGGGTGGGCAACACAAGGTTTTTTCTCCCAGCTGCCCCATGATATGAAAATATCTCA
TTAGGGCCAATTAGTTGTATGGAAAATTGTTGTCTAGATGATGTTGATTGTTATCCTCTT
CCCTTTCCATTTGGCAGCTAGCTTCTGATAGAGAGCTTCCTTGTACTCTAGTACTAGAGT
TGCTGAACTGCTGTACTACTAGTATATATATATTGTTGTTTCCAACACGTTATGTGGCAT
GAACTATGATAATGAAAATGTTGTGGTTTTC