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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0546600-00
CDS Infomation

cds chromosome:IRGSP-1.0:11:20174656:20176341:-1 gene:Os11g0546600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to phospholipase A2. (Os11t0546600-00)
Sequence

ATGGGTGACGCCCAGCGGCGGCAGCTTCTCCTCGTCGCCCTCATGCTCGCCGCCGCCGCA
GACCACTCGCTGGCCGGCTTCTTCGGCGGCGCGCCGCCGGCGTCTGGTCCCGCCGCCGCC
GCCGCCGACAACGACGAGAAGTGCAGCCGGACGTGCGAGTCGGAGCACTGCCTGGGCACG
TATGCACAGGCGCCGTTGATGCGGTACGGCAAGTACTGCGGCGTGTCGTACACCGGGTGC
CCCGGCGAGGCCCCCTGCGACGCCCTCGACGCCTGCTGCATGCTCCACGACGCATGTGTC
CAGGCCACCGACAATGACTACCTCAACATGCTGTGCAACCAGAGCCTGCTGGACTGCGTG
GCGGCGGTGAGGTCGCCGGCGGCGAGGATCAGGACGTTCGAGGGGAACCAGTGCAACGTG
ACGGACGTCGCCGACGAGATCACGTCGCTCGTCGAGGCCGCCGTCTTCGCCAAGAGGATC
CTGCATAGGCCGTAG

Peptide Sequence

PEP ID

Os11t0546600-00
PEP Infomation

pep chromosome:IRGSP-1.0:11:20174656:20176341:-1 gene:Os11g0546600 transcript:Os11t0546600-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to phospholipase A2. (Os11t0546600-00)
Sequence

MGDAQRRQLLLVALMLAAAADHSLAGFFGGAPPASGPAAAAADNDEKCSRTCESEHCLGT
YAQAPLMRYGKYCGVSYTGCPGEAPCDALDACCMLHDACVQATDNDYLNMLCNQSLLDCV
AAVRSPAARIRTFEGNQCNVTDVADEITSLVEAAVFAKRILHRP

Transcript Sequence

Transcript ID

Os11t0546600-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:20174656:20176341:-1 gene:Os11g0546600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to phospholipase A2. (Os11t0546600-00)
Sequence

GAGCTGATCAGCGATTAGGCGAAGCAAACGTACCAAATTATAATGGGTGACGCCCAGCGG
CGGCAGCTTCTCCTCGTCGCCCTCATGCTCGCCGCCGCCGCAGACCACTCGCTGGCCGGC
TTCTTCGGCGGCGCGCCGCCGGCGTCTGGTCCCGCCGCCGCCGCCGCCGACAACGACGAG
AAGTGCAGCCGGACGTGCGAGTCGGAGCACTGCCTGGGCACGTATGCACAGGCGCCGTTG
ATGCGGTACGGCAAGTACTGCGGCGTGTCGTACACCGGGTGCCCCGGCGAGGCCCCCTGC
GACGCCCTCGACGCCTGCTGCATGCTCCACGACGCATGTGTCCAGGCCACCGACAATGAC
TACCTCAACATGCTGTGCAACCAGAGCCTGCTGGACTGCGTGGCGGCGGTGAGGTCGCCG
GCGGCGAGGATCAGGACGTTCGAGGGGAACCAGTGCAACGTGACGGACGTCGCCGACGAG
ATCACGTCGCTCGTCGAGGCCGCCGTCTTCGCCAAGAGGATCCTGCATAGGCCGTAGCTT
TAATTAGCTAGCTTGTAGCCGCCACATGTAATTAATTGTTGTTTTTGCTAATTAAGCTGC
TACTGTGCATGTTGTCTGGCATCATAGATCGATGCACATTGATTAATTAATTCCAGTCGT
CTCCGGATGCTAC