Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0545800-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:20119120:20125235:-1 gene:Os11g0545800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to regulator of chromosome condensation (RCC1) family protein / UVB-resistance protein-related. (Os11t0545800-01)
Sequence

ATGTGGCGGGCGAGGCGGTGGCCGTGGCCGTGGCGGTCGCAGCGGCGCGCGGCGAGGATG
CTCTCGTCGGGTGAGCCAGCGGCGGGGCGGCGGAGGGTGGCGGCGCTGTGGGGGAACGGG
GACTACGGGCGGCTGGGGATGGGGGCGCTGGAGTCGCGGTGGAGCCCCACGGCGTGCCCC
TTCTTCCTCACCGGCCGCCCCGGCGACGACGACGACGACCCGCCCGCCTCCCTCGCCTGC
GGCGGCGCCCACACCCTCTTCCTCACCGAGAGCGGGCGCGTGTTCGCCGCGGGTCTCAAC
GACTTCGGGCAGCTCGGGATAGGCTCCTCCGTGACTCATTCCCTGGAGCCTATTGAAGTT
TCTGGCTTTGATGAGAAAGTTGTGGAAGTTTCAGCTGGCAACCATCATTCTTGTGCAGTA
ACTGCGGATGGCAAGCTCTTCGCTTGGGGCAGAAATTCAAGTGGCCAGCTTGGTCTTGGC
AAAAGGGCAGGAAAAGTAGTTTCTACCCCAAGAAAGGTGGACTGCTTGGCTGACGCTAGA
GTGAAAATGGTTGCTTTGGGGTCGGAGCATTCAATTGCTACTACCGAGGAGGGTGAAGTC
TTGAGCTGGGGAGCTGCTGGTGCTGGCAGGCTTGGACATGGACATAAAACTAGCATACTG
GGATTCTCTATAACTACAAGTGAATATACTCCAAGGTTGATCAAGAATCTTGATGGTGTC
AAGATTAAAAGGATAGCTGCGGGAATGCTGCACTCAGCTTGTATCGATGAAAAAGGTACA
TTGTTCATATTCGGGCAGAAGACTGAGAAGGGATTTGGAAGATCAGGTGATGAACTTAGA
CCAACTGTTGTTGAGGAGGTACCATTTTCTGAAGAGGTTGCTTGCGGAGGTTATCATACT
TGTGTTGTGACAGATAGTGGAGATTTGTACTCTTGGGGTTCAAATGAAAATGGCTGCCTT
GGTCTTGGTGGTACAGACATGGTTCGCTCTCCGGAGGTTCTGAAGAGTTCTTTATTTAAG
TTTCCTGTATCTAAGGTATCATGTGGTTGGAAGCACACCGCTGTAATTTCAGGTGGAGAT
ATTTACACGTGGGGCTGGGGAGGTGCTAACGGTACTTTTTTCGAAGAGGGCCATTCTTCT
GGTGGACAGTTAGGACACGGAAACGATGTTGATTACTTTGAACCTATGATGGTGGAATTC
GGCAAGAATGCAAGGGCCGTCCATGTGTCATGTGGTTTCAATCATACTGGTGCAATATTT
GAATACAGCGAGAACTGA

Peptide Sequence

PEP ID

Os11t0545800-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:20119120:20125235:-1 gene:Os11g0545800 transcript:Os11t0545800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to regulator of chromosome condensation (RCC1) family protein / UVB-resistance protein-related. (Os11t0545800-01)
Sequence

MWRARRWPWPWRSQRRAARMLSSGEPAAGRRRVAALWGNGDYGRLGMGALESRWSPTACP
FFLTGRPGDDDDDPPASLACGGAHTLFLTESGRVFAAGLNDFGQLGIGSSVTHSLEPIEV
SGFDEKVVEVSAGNHHSCAVTADGKLFAWGRNSSGQLGLGKRAGKVVSTPRKVDCLADAR
VKMVALGSEHSIATTEEGEVLSWGAAGAGRLGHGHKTSILGFSITTSEYTPRLIKNLDGV
KIKRIAAGMLHSACIDEKGTLFIFGQKTEKGFGRSGDELRPTVVEEVPFSEEVACGGYHT
CVVTDSGDLYSWGSNENGCLGLGGTDMVRSPEVLKSSLFKFPVSKVSCGWKHTAVISGGD
IYTWGWGGANGTFFEEGHSSGGQLGHGNDVDYFEPMMVEFGKNARAVHVSCGFNHTGAIF
EYSEN

Transcript Sequence

Transcript ID

Os11t0545800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:20119120:20125235:-1 gene:Os11g0545800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to regulator of chromosome condensation (RCC1) family protein / UVB-resistance protein-related. (Os11t0545800-01)
Sequence

AGGAGCAGCCTCTCGTCGCCGACGTGGACTCACCCGACGCCGCGAGCCGAGAGCGCGAGA
GCGCGAGAGGCGAGAGCAGCAACCACCGCCGATGTGGCGGGCGAGGCGGTGGCCGTGGCC
GTGGCGGTCGCAGCGGCGCGCGGCGAGGATGCTCTCGTCGGGTGAGCCAGCGGCGGGGCG
GCGGAGGGTGGCGGCGCTGTGGGGGAACGGGGACTACGGGCGGCTGGGGATGGGGGCGCT
GGAGTCGCGGTGGAGCCCCACGGCGTGCCCCTTCTTCCTCACCGGCCGCCCCGGCGACGA
CGACGACGACCCGCCCGCCTCCCTCGCCTGCGGCGGCGCCCACACCCTCTTCCTCACCGA
GAGCGGGCGCGTGTTCGCCGCGGGTCTCAACGACTTCGGGCAGCTCGGGATAGGCTCCTC
CGTGACTCATTCCCTGGAGCCTATTGAAGTTTCTGGCTTTGATGAGAAAGTTGTGGAAGT
TTCAGCTGGCAACCATCATTCTTGTGCAGTAACTGCGGATGGCAAGCTCTTCGCTTGGGG
CAGAAATTCAAGTGGCCAGCTTGGTCTTGGCAAAAGGGCAGGAAAAGTAGTTTCTACCCC
AAGAAAGGTGGACTGCTTGGCTGACGCTAGAGTGAAAATGGTTGCTTTGGGGTCGGAGCA
TTCAATTGCTACTACCGAGGAGGGTGAAGTCTTGAGCTGGGGAGCTGCTGGTGCTGGCAG
GCTTGGACATGGACATAAAACTAGCATACTGGGATTCTCTATAACTACAAGTGAATATAC
TCCAAGGTTGATCAAGAATCTTGATGGTGTCAAGATTAAAAGGATAGCTGCGGGAATGCT
GCACTCAGCTTGTATCGATGAAAAAGGTACATTGTTCATATTCGGGCAGAAGACTGAGAA
GGGATTTGGAAGATCAGGTGATGAACTTAGACCAACTGTTGTTGAGGAGGTACCATTTTC
TGAAGAGGTTGCTTGCGGAGGTTATCATACTTGTGTTGTGACAGATAGTGGAGATTTGTA
CTCTTGGGGTTCAAATGAAAATGGCTGCCTTGGTCTTGGTGGTACAGACATGGTTCGCTC
TCCGGAGGTTCTGAAGAGTTCTTTATTTAAGTTTCCTGTATCTAAGGTATCATGTGGTTG
GAAGCACACCGCTGTAATTTCAGGTGGAGATATTTACACGTGGGGCTGGGGAGGTGCTAA
CGGTACTTTTTTCGAAGAGGGCCATTCTTCTGGTGGACAGTTAGGACACGGAAACGATGT
TGATTACTTTGAACCTATGATGGTGGAATTCGGCAAGAATGCAAGGGCCGTCCATGTGTC
ATGTGGTTTCAATCATACTGGTGCAATATTTGAATACAGCGAGAACTGAATTTTTACATC
ACAGCAGGACCCCATCCAAAGCATGCTTATTACCAAGTTATAAGTGCACATACAAGAGAA
AGGAAGATAGGATAAAGTTTTGCTCTTTAATTCGAGTGTATAAAAAGAAAAATAAATTAA
ACTGATTACACCCCTCGCATAGGGTGGGGGTGGGGGGTCTAAATTAAGATAAACAGAACA
AGAGGCAATCTGGATGCATTTGTTGTATGTATCAGAATTACAGGTTAGTAGAACTGTATA
TTGTTCTTTCATTATTTTTCTTTTAATCCATATGTATAATCTTCACGACCAATAATAACA
ACTCTGATGCT