Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0544800-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:20030056:20034630:-1 gene:Os11g0544800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE B SUBUNIT description:Glutamyl-tRNA(Gln) amidotransferase subunit B, Primary root development (Os11t0544800-01)
Sequence

ATGGCACTGACCCTTCTCAGAGGGATGCGAACGCCGGTTGTAGCTAGAAGGAATGCTGGC
TTGTTCTTCACCACATTGCAGTCTCCGTTGTTGTCCCGCTTCACGATGAGAGCGGAGAGC
GCGCGGGCCGCAGCGCCCAAGTCGATTCAGCTGGCGACCAAGGAGGCGGCGGAGCAGAAG
GCGCAGGGCTTCGAGGCGGTCATCGGGATCGAGACCCATGTCCAGCTCTCGACGGTCACA
AAGGCGTTCTGCTCGTGCCCGTACAGCTACGGGTCGCAGCCGAACAGCACCGTCTGCCCC
ACCTGCATGGGGCACCCCGGAACGCTGCCCGTTCTTAACGCAAAGGTTGTCGAATGCGCC
GTGAGGTTGGGCCTCGCTCTCAATTGCGAGATCGCGATGACGTCCAAGTTTGATCGGAAG
CAGTACTTCTACCCGGACCTGCCCAAGGGGTATCAGATTTCGCAGTTTGACATTCCCATT
GCCAAGGAGGGTTACCTTGATTTGGATCTTCCGGTGGAGTTCGGCGGTGGGCATAGGAGA
TTTGGGGTCACAAGGGTGCATATGGAAGAAGATGCTGGCAAGCTGCTTCACTCTGAATCC
GGGAGTTACTCTCAGGTTGACTTAAATAGGGCTGGCGTTCCTTTACTTGAAATTGTCTCA
GAGCCAGATATGAGAACAGGGATAGAGGCTGCCGAGTATGGTGCTGAGCTACAGAGGCTT
GTTAGGTACCTGGGCGTGAGTAATGGTAACATGCAGGAAGGTTCCCTTCGCTGTGATGTG
AATGTTTCTGTTCGGCCAATTGGACAATCAAATTTTGGTACAAAGGTTGAAATAAAGAAT
ATGAATTCATTTTCTGCAATAAGTAGGGCAATAGATTATGAGATCTCCCGGCAGATTCTT
CTTCATAAAGAAGGTCAGGCTGATCAAATTGTACAAGAAACCCGGCTGTGGGATGAATCT
TCTCAGAAAACTTTTACAATGCGAAAAAAGGAGGGACTTGCTGATTATAGATATTTTCCT
GAGCCTGATCTTCCTGAAGTTGTTCTTACTAGTGAGTACATTGATGAAATTCAAAACTCA
ATGCCAGAGCTTCCTGAAGCAAAGCGTAGGCGCTTCGAGAATATGGGACTCAGCATGCAA
GATGTTCTTTTCCTTGCTAATGACGATAATGTTGCTCGGTTCTTCGATTCTACCCTTGAG
CACGGCGCGGATGCAAAGCTGGCTGCCAACTGGATCATGGGTGACATTGCTGCTTATTTG
AAAAATGAAAAACTTTCCATTGATGAAATTAAATTAACACCTCTGGAGCTTTCTGAATTG
ATTGCATCTATAAGGAATGGAACTATCAGTGGGAAGATTGGAAAGGAGATTCTGATTGAA
CTCATTGCGAAAGGTGGAACTGTCAAGTCTGTGATAGAGGAGAAAGATTTGGTTCAGATA
GCAGATCCTGCAGCAATTGAGGCAATGGTAGATCAAGTATTAGCTGATAATCCAAAGCAA
CTTGAGCAGTATCGGTCCGGGAAAACTAAATTGCAAGGATTTTTTGCTGGCCAGGTGATG
AAAGCATCAAAGGGTAAAGCTAATCCTGTTTTGTTGAACAAAATCCTCGGGGAGAAATTG
AAGGCCAATAGTTGA

Peptide Sequence

PEP ID

Os11t0544800-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:20030056:20034630:-1 gene:Os11g0544800 transcript:Os11t0544800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE B SUBUNIT description:Glutamyl-tRNA(Gln) amidotransferase subunit B, Primary root development (Os11t0544800-01)
Sequence

MALTLLRGMRTPVVARRNAGLFFTTLQSPLLSRFTMRAESARAAAPKSIQLATKEAAEQK
AQGFEAVIGIETHVQLSTVTKAFCSCPYSYGSQPNSTVCPTCMGHPGTLPVLNAKVVECA
VRLGLALNCEIAMTSKFDRKQYFYPDLPKGYQISQFDIPIAKEGYLDLDLPVEFGGGHRR
FGVTRVHMEEDAGKLLHSESGSYSQVDLNRAGVPLLEIVSEPDMRTGIEAAEYGAELQRL
VRYLGVSNGNMQEGSLRCDVNVSVRPIGQSNFGTKVEIKNMNSFSAISRAIDYEISRQIL
LHKEGQADQIVQETRLWDESSQKTFTMRKKEGLADYRYFPEPDLPEVVLTSEYIDEIQNS
MPELPEAKRRRFENMGLSMQDVLFLANDDNVARFFDSTLEHGADAKLAANWIMGDIAAYL
KNEKLSIDEIKLTPLELSELIASIRNGTISGKIGKEILIELIAKGGTVKSVIEEKDLVQI
ADPAAIEAMVDQVLADNPKQLEQYRSGKTKLQGFFAGQVMKASKGKANPVLLNKILGEKL
KANS

Transcript Sequence

Transcript ID

Os11t0544800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:20030056:20034630:-1 gene:Os11g0544800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE B SUBUNIT description:Glutamyl-tRNA(Gln) amidotransferase subunit B, Primary root development (Os11t0544800-01)
Sequence

TTTTTCCCACTCCCCTCTATCCACTGTTTCCGCCGCCGCCGCCGCCGCCGCCGCCGCCCG
CCGCGCCGGCGTTCTCCCCCCGCCGACGAAGCACGGCGTGGAGTGTAGACGCAGCCTCCT
CGCTCTCTCTCACGCCGGCGAGCAGGGTCTGGAGCCAGGAGCGACGCGGCGGCCGGGGCC
GGGGCCTCCATCTCGGTTCGAACCGCACTGAAGGTCCCTCCCTGCATTAGGGCGCACAAT
GGCACTGACCCTTCTCAGAGGGATGCGAACGCCGGTTGTAGCTAGAAGGAATGCTGGCTT
GTTCTTCACCACATTGCAGTCTCCGTTGTTGTCCCGCTTCACGATGAGAGCGGAGAGCGC
GCGGGCCGCAGCGCCCAAGTCGATTCAGCTGGCGACCAAGGAGGCGGCGGAGCAGAAGGC
GCAGGGCTTCGAGGCGGTCATCGGGATCGAGACCCATGTCCAGCTCTCGACGGTCACAAA
GGCGTTCTGCTCGTGCCCGTACAGCTACGGGTCGCAGCCGAACAGCACCGTCTGCCCCAC
CTGCATGGGGCACCCCGGAACGCTGCCCGTTCTTAACGCAAAGGTTGTCGAATGCGCCGT
GAGGTTGGGCCTCGCTCTCAATTGCGAGATCGCGATGACGTCCAAGTTTGATCGGAAGCA
GTACTTCTACCCGGACCTGCCCAAGGGGTATCAGATTTCGCAGTTTGACATTCCCATTGC
CAAGGAGGGTTACCTTGATTTGGATCTTCCGGTGGAGTTCGGCGGTGGGCATAGGAGATT
TGGGGTCACAAGGGTGCATATGGAAGAAGATGCTGGCAAGCTGCTTCACTCTGAATCCGG
GAGTTACTCTCAGGTTGACTTAAATAGGGCTGGCGTTCCTTTACTTGAAATTGTCTCAGA
GCCAGATATGAGAACAGGGATAGAGGCTGCCGAGTATGGTGCTGAGCTACAGAGGCTTGT
TAGGTACCTGGGCGTGAGTAATGGTAACATGCAGGAAGGTTCCCTTCGCTGTGATGTGAA
TGTTTCTGTTCGGCCAATTGGACAATCAAATTTTGGTACAAAGGTTGAAATAAAGAATAT
GAATTCATTTTCTGCAATAAGTAGGGCAATAGATTATGAGATCTCCCGGCAGATTCTTCT
TCATAAAGAAGGTCAGGCTGATCAAATTGTACAAGAAACCCGGCTGTGGGATGAATCTTC
TCAGAAAACTTTTACAATGCGAAAAAAGGAGGGACTTGCTGATTATAGATATTTTCCTGA
GCCTGATCTTCCTGAAGTTGTTCTTACTAGTGAGTACATTGATGAAATTCAAAACTCAAT
GCCAGAGCTTCCTGAAGCAAAGCGTAGGCGCTTCGAGAATATGGGACTCAGCATGCAAGA
TGTTCTTTTCCTTGCTAATGACGATAATGTTGCTCGGTTCTTCGATTCTACCCTTGAGCA
CGGCGCGGATGCAAAGCTGGCTGCCAACTGGATCATGGGTGACATTGCTGCTTATTTGAA
AAATGAAAAACTTTCCATTGATGAAATTAAATTAACACCTCTGGAGCTTTCTGAATTGAT
TGCATCTATAAGGAATGGAACTATCAGTGGGAAGATTGGAAAGGAGATTCTGATTGAACT
CATTGCGAAAGGTGGAACTGTCAAGTCTGTGATAGAGGAGAAAGATTTGGTTCAGATAGC
AGATCCTGCAGCAATTGAGGCAATGGTAGATCAAGTATTAGCTGATAATCCAAAGCAACT
TGAGCAGTATCGGTCCGGGAAAACTAAATTGCAAGGATTTTTTGCTGGCCAGGTGATGAA
AGCATCAAAGGGTAAAGCTAATCCTGTTTTGTTGAACAAAATCCTCGGGGAGAAATTGAA
GGCCAATAGTTGAGGGGGTTTGTCGACAAACGGAGACTCATGTTGTAGTCCACGAGTGGA
CAATCGAACTAAACCCTGCAATTTGGGGTCTATTTTTCAATG