Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0544000-02
CDS Infomation

cds chromosome:IRGSP-1.0:11:19985665:19989024:1 gene:Os11g0544000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os11t0544000-01);Conserved hypothetical protein. (Os11t0544000-02)
Sequence

ATGCTTCTGGCGGCGGCAACTGCCACAGCAGCGCCGGTGTCGTCTAGCTCTAGCTTCTTC
GCCGCGACGACAAGAGCCACCACCACCACCCGCTTCACTGCCCAGCTCCAGCTCTCGCTG
CCACGCCGGTGCCGATCCTGGTGGGGCAATGGGAAAGCGCGCCGGAGCAGCCGCCGCCGC
AGCCACCATTGCTGGGCCGGTGGCGGCGCCGCGACGCCGGAGGACCACATGGACGAGCTG
CCGCCGGGGAGAGGCCGCTACCACCCGTTCGAGGAGATCGCCGAGAAGCTCCAGGTCGAC
GACGGCGAGCCCGCCCACCTCACCGACGCCGAGTCCGCACGAACCATCGTCGAGGTGAAC
AGCAAGGCGACGGTGATGATCTCGACGCTGATCGACGAGGGCGTGCACGAGAGGATCATC
CTGCCGGAGTTCCCCTACCTCACCGATGAGAACGGAGATATTTACTTCGAGGTCGACAAC
GACGACGCCCTCCTGGAGAGCATCATGGGAGACGACAAGACTGCGCATGTTATCATAGGG
CTTGACAACACTCAGGTCTTTGCTGACTTGGATCTGGCAGCGGCATCTGCGACTGAGTTT
GCTCAAGAAGACGATGACGACGACGATGATGATGACGACTCGGATGATGAGGAGAGTGAC
TTTGACGATGACTTTGATGGGGTGATGAAAAATCCTTCTCAGGAAATTCAGGGTTCTTGA

Peptide Sequence

PEP ID

Os11t0544000-02
PEP Infomation

pep chromosome:IRGSP-1.0:11:19985665:19989024:1 gene:Os11g0544000 transcript:Os11t0544000-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os11t0544000-01);Conserved hypothetical protein. (Os11t0544000-02)
Sequence

MLLAAATATAAPVSSSSSFFAATTRATTTTRFTAQLQLSLPRRCRSWWGNGKARRSSRRR
SHHCWAGGGAATPEDHMDELPPGRGRYHPFEEIAEKLQVDDGEPAHLTDAESARTIVEVN
SKATVMISTLIDEGVHERIILPEFPYLTDENGDIYFEVDNDDALLESIMGDDKTAHVIIG
LDNTQVFADLDLAAASATEFAQEDDDDDDDDDDSDDEESDFDDDFDGVMKNPSQEIQGS

Transcript Sequence

Transcript ID

Os11t0544000-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:19985665:19989024:1 gene:Os11g0544000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os11t0544000-01);Conserved hypothetical protein. (Os11t0544000-02)
Sequence

GGGAAACTATCTTCTCCACAAATAACTATCTCCTCCTCCTCCTCCTCTCCCCATCAGCTC
CGCCGCTCGCCGCCGGCCACCCTCCCCCCTTCCATGGTACACCATGCTTCTGGCGGCGGC
AACTGCCACAGCAGCGCCGGTGTCGTCTAGCTCTAGCTTCTTCGCCGCGACGACAAGAGC
CACCACCACCACCCGCTTCACTGCCCAGCTCCAGCTCTCGCTGCCACGCCGGTGCCGATC
CTGGTGGGGCAATGGGAAAGCGCGCCGGAGCAGCCGCCGCCGCAGCCACCATTGCTGGGC
CGGTGGCGGCGCCGCGACGCCGGAGGACCACATGGACGAGCTGCCGCCGGGGAGAGGCCG
CTACCACCCGTTCGAGGAGATCGCCGAGAAGCTCCAGGTCGACGACGGCGAGCCCGCCCA
CCTCACCGACGCCGAGTCCGCACGAACCATCGTCGAGGTGAACAGCAAGGCGACGGTGAT
GATCTCGACGCTGATCGACGAGGGCGTGCACGAGAGGATCATCCTGCCGGAGTTCCCCTA
CCTCACCGATGAGAACGGAGATATTTACTTCGAGGTCGACAACGACGACGCCCTCCTGGA
GAGCATCATGGGAGACGACAAGACTGCGCATGTTATCATAGGGCTTGACAACACTCAGGT
CTTTGCTGACTTGGATCTGGCAGCGGCATCTGCGACTGAGTTTGCTCAAGAAGACGATGA
CGACGACGATGATGATGACGACTCGGATGATGAGGAGAGTGACTTTGACGATGACTTTGA
TGGGGTGATGAAAAATCCTTCTCAGGAAATTCAGGGTTCTTGATTACTTTGCCAATTGCA
ATTGGTGATTGGATTTTCCTTGACACTGCTGCATCTCTGAAAACATTGCAGGAGGGTGTG
TTTGCAGTCGATGACGACGATGGCGATGAGGATGGAGAAGACGAAGATCTGCCTAGATGG
ACAGATCTAGAAACCATGAATTCCTGCCATCCATTGTACTTTGCAAGGATGATTGCAGAG
ACCTCAACCAAGTCTAGTATAGACTGGTTGGACAGACCACCTGCAAGCCTTGTTGTTGAG
GGTCAACTGAGACCAGCCTTTGCTGAAGAGAGCACCATGGTTTCAAGGCATTTATCAAAT
GATGAACCACGGAAAGATAACAAGGAGAGTGGTGCTACATTTTTCAAGGTTGAGGTTCTG
AGCATTGAGCTGATCACTGCATATGGAACTGAGCCAAAGGTAAAGATAGGGGAATACCGG
AAAGCTAGGCCAGATATCATTGCGCATTCTGCACCGAACATAATATCGCGCTTGAGAGCT
GGTGGAGACAAGATAAGCCAGGCTCTGAAATCACTCTGCTGGAGGTGCAAGGCCATCCAA
ATAGAGGAGGCAGCTGTCATTGGAGTGGACTGCCTTGGGTTTGACTTGAGAGTGTGCTCA
GGAACACAAGTGCAGACACTGAGATTTGCGTTCCCTGCAAAGGCCACTTCAGAGTTTGGT
GCAGAGAAGCAAATACACGAACTTCTGTTTCCTAGGATACAGCAAGAGGGACAGTCACCA
CAAACTAGACAGAAAGAGTCTTGATGTAATTCGGAGGAGATAATTTATTCATTTGGTAGG
AATTACTAGCTAAAATAAAATATATGCCACATGTCCTTTTTCTTCCATTTATCCATGGGG
TAGAATTTTTAGATTCCAGTTTTGTGTCATTGTAGATTGATTTTATGTATCAATCTACCA
AAGTATTTCAAAATTCTTTAGACCTGTTGAGGAAAGCACAGATAAGAGAAGCACTGTAGG
AGCCTCTGAATATTTGGATGGCAATCGATACAAATAAGACGTGCCAGCAAGTTCAGTAGT
CAATTTATAATCCAGAGAACAGCAAAGCAATGTAACATTAGATGGTTTGTGTGAACCAAA
TTGTACACAAATTCTTCTTGAGCGAGTCAGTCTCAAGTTACACTAGTCAAGTAGTCAGCA
TCACCTGAAAAACCGAAGGCTCTACGGGTTCATTTGTTCAGCAATTCCTGAAGGAGTGGT
ACATGAAGTGGGGAAACGAAAAGGATGTAACCACAGATAGGTACATATTTCCTTCTAACA
GCAGGATCTATGAAGGTTAGGAAAACATATGCCCACAGGCATTTCCAAACACACAACCTT
AATGCTGAACCATGGGGATGAATCTTGTACAACTTGATTACTCTTGAGCTGTTGCTTGTT
CAGAAGATTGGTC