Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0543500-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:19956772:19963299:-1 gene:Os11g0543500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0502B11.6 protein. (Os11t0543500-01)
Sequence

ATGGAGATGACGACGACGACGGAGAAGTGCATCAGCAGCAGCAGCAGCGTCCATGGCGGC
AACAATCGTCGAGAAGAATACCCCAAGGAGGGAGCCGACGACGACGTCGAGGCAGGCGTC
CTCGGCCGTGACGGCGAGGCTGCGGCGACGACGACGCGGCAGCGCCTCGTGTCGCTCGAC
GTCTTCAGGGGAATCACCGTCGCGCTTATGATCCTCGTGGATGATGTTGGTGGCATTGTC
CCGGCGATCAGCCACTCTCCATGGGATGGCGTGACGCTAGCGGACTTTGTCTTCCCCTTC
TTCCTCTTCATCGTTGGGGTCTCCTTAGCTTTTGCCTATAAGAAAGTGCCAGACAAAATG
TTAGCAACCAAAAAGGCCATGCTTAGGGCTGTAAAACTCTTCATTGTGGGCCTTATATTG
CAAGGTGGCTTCTTCCATGGCATCCATGAACTTACCTATGGTGTCGATATTCGCAAAATT
CGGTTAATGGGTGTACTACAGAGGATTGCAATAGCCTACTTAGTGGTGGCGCTTTGCGAA
ATCTGGCTAAGGAGGGTTAGTAGTGGCGGTAACATTGGCTCTGGCTCTATGTTAATAACA
AGATACCATCATCAGATGTTTGTGGGTTTGGTTCTGGTGGTCACGTACCTGGTGATTTTG
TATGGTTTGCACGTGCCAGATTGGGAGTATGAGGTCACATCTCCGGACTCAACTGTGAAG
CATTTTCTGGTGAAATGTGGAGTGAAAGGAGATACAGGGCCAGGTTGCAATGCTGTTGGC
ATGATTGATCGGTCTGTTCTTGGAATCCAGCATCTCTATGCACATCCTGTTTATCTGAAA
ACAGAGCAATGCAGCATGGCCTCTCCACGCAACGGCCCTCTTCCACCTAATGCCCCATCA
TGGTGTGAAGCTCCATTTGATCCTGAAGGGCTTCTTAGCTCGTTGATGGCGATTGTGACA
TGCTTAATCGGTCTCCAGATTGGCCATGTAATTGTCCATTTCAAGAAGCACAATGAGAGG
ATTAAGCGATGGTCGATTCTATCATTGTGCTTGCTCACTCTTGGCTTCTCTCTTCATCTC
TTCGGTCTGCACATGAACAAATCACTGTACAGCCTGAGCTACACCTGTGTCACCACTGGC
ACTGCTGGTTTATTCTTCGTGGCTATCTACCTGCTGGTGGATGTGAAAGGGTACAAGAGG
CCAGTTCTTCCCATGGAGTGGATGGGCAAGCATGCTCTGATGATCTTTGTTCTCGTAGCA
TGCAACGTTATCCCAGTACTGGTTCAGGGATTCTACTGGAAAGAGCCCAGCAACAACCTT
CTGAAACTCATTGGAATAGGAGGCTGA

Peptide Sequence

PEP ID

Os11t0543500-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:19956772:19963299:-1 gene:Os11g0543500 transcript:Os11t0543500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0502B11.6 protein. (Os11t0543500-01)
Sequence

MEMTTTTEKCISSSSSVHGGNNRREEYPKEGADDDVEAGVLGRDGEAAATTTRQRLVSLD
VFRGITVALMILVDDVGGIVPAISHSPWDGVTLADFVFPFFLFIVGVSLAFAYKKVPDKM
LATKKAMLRAVKLFIVGLILQGGFFHGIHELTYGVDIRKIRLMGVLQRIAIAYLVVALCE
IWLRRVSSGGNIGSGSMLITRYHHQMFVGLVLVVTYLVILYGLHVPDWEYEVTSPDSTVK
HFLVKCGVKGDTGPGCNAVGMIDRSVLGIQHLYAHPVYLKTEQCSMASPRNGPLPPNAPS
WCEAPFDPEGLLSSLMAIVTCLIGLQIGHVIVHFKKHNERIKRWSILSLCLLTLGFSLHL
FGLHMNKSLYSLSYTCVTTGTAGLFFVAIYLLVDVKGYKRPVLPMEWMGKHALMIFVLVA
CNVIPVLVQGFYWKEPSNNLLKLIGIGG

Transcript Sequence

Transcript ID

Os11t0543500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:19956772:19963299:-1 gene:Os11g0543500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0502B11.6 protein. (Os11t0543500-01)
Sequence

ACTTCTCTGTATATATATATGCAGCTGCTGCTCATCGCCAAATCGACGGCAACAACTAAC
GATTGATCGCCATCAAGTATAGCTATAGCTAGCTAGCTTGTGAATTCATCAATGGAGATG
ACGACGACGACGGAGAAGTGCATCAGCAGCAGCAGCAGCGTCCATGGCGGCAACAATCGT
CGAGAAGAATACCCCAAGGAGGGAGCCGACGACGACGTCGAGGCAGGCGTCCTCGGCCGT
GACGGCGAGGCTGCGGCGACGACGACGCGGCAGCGCCTCGTGTCGCTCGACGTCTTCAGG
GGAATCACCGTCGCGCTTATGATCCTCGTGGATGATGTTGGTGGCATTGTCCCGGCGATC
AGCCACTCTCCATGGGATGGCGTGACGCTAGCGGACTTTGTCTTCCCCTTCTTCCTCTTC
ATCGTTGGGGTCTCCTTAGCTTTTGCCTATAAGAAAGTGCCAGACAAAATGTTAGCAACC
AAAAAGGCCATGCTTAGGGCTGTAAAACTCTTCATTGTGGGCCTTATATTGCAAGGTGGC
TTCTTCCATGGCATCCATGAACTTACCTATGGTGTCGATATTCGCAAAATTCGGTTAATG
GGTGTACTACAGAGGATTGCAATAGCCTACTTAGTGGTGGCGCTTTGCGAAATCTGGCTA
AGGAGGGTTAGTAGTGGCGGTAACATTGGCTCTGGCTCTATGTTAATAACAAGATACCAT
CATCAGATGTTTGTGGGTTTGGTTCTGGTGGTCACGTACCTGGTGATTTTGTATGGTTTG
CACGTGCCAGATTGGGAGTATGAGGTCACATCTCCGGACTCAACTGTGAAGCATTTTCTG
GTGAAATGTGGAGTGAAAGGAGATACAGGGCCAGGTTGCAATGCTGTTGGCATGATTGAT
CGGTCTGTTCTTGGAATCCAGCATCTCTATGCACATCCTGTTTATCTGAAAACAGAGCAA
TGCAGCATGGCCTCTCCACGCAACGGCCCTCTTCCACCTAATGCCCCATCATGGTGTGAA
GCTCCATTTGATCCTGAAGGGCTTCTTAGCTCGTTGATGGCGATTGTGACATGCTTAATC
GGTCTCCAGATTGGCCATGTAATTGTCCATTTCAAGAAGCACAATGAGAGGATTAAGCGA
TGGTCGATTCTATCATTGTGCTTGCTCACTCTTGGCTTCTCTCTTCATCTCTTCGGTCTG
CACATGAACAAATCACTGTACAGCCTGAGCTACACCTGTGTCACCACTGGCACTGCTGGT
TTATTCTTCGTGGCTATCTACCTGCTGGTGGATGTGAAAGGGTACAAGAGGCCAGTTCTT
CCCATGGAGTGGATGGGCAAGCATGCTCTGATGATCTTTGTTCTCGTAGCATGCAACGTT
ATCCCAGTACTGGTTCAGGGATTCTACTGGAAAGAGCCCAGCAACAACCTTCTGAAACTC
ATTGGAATAGGAGGCTGATCGATGAATATATATCTTCCGGAAGTTCATGAGAGGGGATAA
TTAAGCTGCAAGCACAACATCATCATTTGCAGTGTTAGGTAGTCTACTGTTGATTTAGTT
TTTTTTTAAAAAAAATGGTCTACGGAATGGCATAGAAATGGAGCAAGGCCAAAAAATCAA
TAAAGTCAACCAGCTGCAGATACT