Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0540100-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:19723041:19734418:-1 gene:Os11g0540100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Xaa-Pro aminopeptidase 2 (EC 3.4.11.9). (Os11t0540100-01)
Sequence

ATGTCGGCGGCGGCGGGGAGGAATGCTCTCCTGGACGAGCTGCGCGCGCTCATGGCGGCC
CACTCCCCGCCGCTCCACGCGCTCGTCGTCCCATCCGACGACGCCCACCAGAGCGAGTAT
GTGGCGGAGCGGGACAAGCGGCTGCAGTTCATCTCCGGGTTCACCGGGATCGCCCGCAGC
GCTGGTTTGGCTCTTATCACTATGAAGGAGGCGCTACTGTGGACGGATGGGCGTTACTTT
TTGCAGGCAGAGAAGCAGCTCAGTGATCACTGGGAATTGATGTGCATGGGAGAAGATCCA
CCAGTTGAAGTTTGGATTGCTGATAACCTATCAGATGAAGCCGTCATTGGAATTAATCCA
TGGTGCATCTCTGTTGACACTGCCCAAAGATATGAGCATGCATTTTCAAAGAAGCACCAG
ACACTGTTTCAACTTTCTTCTGACTTGGTAGATGAAGTATGGAAGGATCGTCCTCTGGCT
AATACTCAGCCTGTAGTGCACCCTGTCGAGTTTGCTGGGTGTAGTGTTACTGGAAAACTT
AAGGAGTTAAGAAAAAAATTACTACATGAAAAGGCTAGGGGCATTATAATTGCTGCCCTT
GATGAGGTTGCTTGGTTGTACAATATTAGAGGAAATGATGTGCACTACAGCCCAGTGGTC
CATTCGTATTCTATTGTAACCCTGCACAGTGCTTTCTTTTATGTGGATAACAGAAAAGTA
TCTGTTGAGAGCTACATGTCTGAGAATGGTATTGATATCAGAGACTATAATATGGTTCAA
TCAGATGTAAGCTTGCTTGCATCTGGACAGCTAAAAGGCTCTGCAGTTAATGGTAGCTCA
CATGAGGGAAATGGTATGAATGATAATTCAAAAATTTTGATTGATAATTCGTGCTGCCTT
GCACTCTACTCAAAACTGGATGAAGATCAAGTTCTTATACTGCAATCACCTGTTGCTCTT
TCAAAGGCTGTGAAGAATCCCGTAGAGCTGGATGGTTTGAGGAAGGCACATATTCGAGAT
GGTGTGGCTGTTGTGCAATACCTGGCTTGGCTTGACAATCAGATGCAAGAGAACTATGGA
GCGTCTGGTTACTTTAGTGGGGCCAAGGGATCACAGAAAAAGGAGCATGTGGAAGTAAAA
CTTACTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCGTGCCGCTAAAGAGTACTTT
AAAGGTCCGAGTTTTCCTATGATTTCAGCCGTGGGACCAAATGCAACAATACTTCACTAT
TCACCTGAAGCAAGTTCATGTGCTGAACTTGATACTGATAAAATATATCTGTTTGACACT
GGGGCTCAGTATCTTGATGGTACTACAGACATCACAAGAACTGTACATTTTGGCAAACCA
TCTGAGCATGAAAAGTCATGCTACACAGCTGTGTTGAAAGGCCACATTGCACTAGACACT
GCTGTATTTCCTAATGGAACCACAGGGCATGCTCTTGATATTCTCGCACGGACACCACTT
TGGAAAAGTGGTCTTGATTATCGGCACGGCACAGGCCATGGGGTTGGATCTTATTTGACT
GTTCATGAAGGTCCTCATCAAATTAGCTTCAGACCTTCTGCTAGAAATGTACCACTACAA
GCATCGATGACTGTAACAGATGAACCTGGTTACTATCAAGATGGAAGCTTTGGTATAAGG
TTGGAGAATGTTCTGATAGTTCAAGATGCCAATACTAAATTTAATTTTGGAGATAAGGGT
TATTTGGCATTTGAACATATAACATGGGCTCCGTACCAGACAAAGCTGATTGACGCCACT
TTGCTGGCCCCTGCCGAGATTGAATGGGTAAACACGTATCACTCAGATTGCCGAAGGATT
TTGCAGCCTTACCTGAATGAGCAGGAGAAGGAATGGCTGAGGAAAGCTACTGAGCCTATT
ACTGTGAGCTGTTAA

Peptide Sequence

PEP ID

Os11t0540100-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:19723041:19734418:-1 gene:Os11g0540100 transcript:Os11t0540100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Xaa-Pro aminopeptidase 2 (EC 3.4.11.9). (Os11t0540100-01)
Sequence

MSAAAGRNALLDELRALMAAHSPPLHALVVPSDDAHQSEYVAERDKRLQFISGFTGIARS
AGLALITMKEALLWTDGRYFLQAEKQLSDHWELMCMGEDPPVEVWIADNLSDEAVIGINP
WCISVDTAQRYEHAFSKKHQTLFQLSSDLVDEVWKDRPLANTQPVVHPVEFAGCSVTGKL
KELRKKLLHEKARGIIIAALDEVAWLYNIRGNDVHYSPVVHSYSIVTLHSAFFYVDNRKV
SVESYMSENGIDIRDYNMVQSDVSLLASGQLKGSAVNGSSHEGNGMNDNSKILIDNSCCL
ALYSKLDEDQVLILQSPVALSKAVKNPVELDGLRKAHIRDGVAVVQYLAWLDNQMQENYG
ASGYFSGAKGSQKKEHVEVKLTEVSVSDKLEGFRAAKEYFKGPSFPMISAVGPNATILHY
SPEASSCAELDTDKIYLFDTGAQYLDGTTDITRTVHFGKPSEHEKSCYTAVLKGHIALDT
AVFPNGTTGHALDILARTPLWKSGLDYRHGTGHGVGSYLTVHEGPHQISFRPSARNVPLQ
ASMTVTDEPGYYQDGSFGIRLENVLIVQDANTKFNFGDKGYLAFEHITWAPYQTKLIDAT
LLAPAEIEWVNTYHSDCRRILQPYLNEQEKEWLRKATEPITVSC

Transcript Sequence

Transcript ID

Os11t0540100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:19723041:19734418:-1 gene:Os11g0540100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Xaa-Pro aminopeptidase 2 (EC 3.4.11.9). (Os11t0540100-01)
Sequence

GACCATTACTTCGTCGGAGAAAAGAAAAAAGAGAGAAAAATTCCACCGATTCGGAGGAAG
TCGAAGCGGAGGGGCAATGTCGGCGGCGGCGGGGAGGAATGCTCTCCTGGACGAGCTGCG
CGCGCTCATGGCGGCCCACTCCCCGCCGCTCCACGCGCTCGTCGTCCCATCCGACGACGC
CCACCAGAGCGAGTATGTGGCGGAGCGGGACAAGCGGCTGCAGTTCATCTCCGGGTTCAC
CGGGATCGCCCGCAGCGCTGGTTTGGCTCTTATCACTATGAAGGAGGCGCTACTGTGGAC
GGATGGGCGTTACTTTTTGCAGGCAGAGAAGCAGCTCAGTGATCACTGGGAATTGATGTG
CATGGGAGAAGATCCACCAGTTGAAGTTTGGATTGCTGATAACCTATCAGATGAAGCCGT
CATTGGAATTAATCCATGGTGCATCTCTGTTGACACTGCCCAAAGATATGAGCATGCATT
TTCAAAGAAGCACCAGACACTGTTTCAACTTTCTTCTGACTTGGTAGATGAAGTATGGAA
GGATCGTCCTCTGGCTAATACTCAGCCTGTAGTGCACCCTGTCGAGTTTGCTGGGTGTAG
TGTTACTGGAAAACTTAAGGAGTTAAGAAAAAAATTACTACATGAAAAGGCTAGGGGCAT
TATAATTGCTGCCCTTGATGAGGTTGCTTGGTTGTACAATATTAGAGGAAATGATGTGCA
CTACAGCCCAGTGGTCCATTCGTATTCTATTGTAACCCTGCACAGTGCTTTCTTTTATGT
GGATAACAGAAAAGTATCTGTTGAGAGCTACATGTCTGAGAATGGTATTGATATCAGAGA
CTATAATATGGTTCAATCAGATGTAAGCTTGCTTGCATCTGGACAGCTAAAAGGCTCTGC
AGTTAATGGTAGCTCACATGAGGGAAATGGTATGAATGATAATTCAAAAATTTTGATTGA
TAATTCGTGCTGCCTTGCACTCTACTCAAAACTGGATGAAGATCAAGTTCTTATACTGCA
ATCACCTGTTGCTCTTTCAAAGGCTGTGAAGAATCCCGTAGAGCTGGATGGTTTGAGGAA
GGCACATATTCGAGATGGTGTGGCTGTTGTGCAATACCTGGCTTGGCTTGACAATCAGAT
GCAAGAGAACTATGGAGCGTCTGGTTACTTTAGTGGGGCCAAGGGATCACAGAAAAAGGA
GCATGTGGAAGTAAAACTTACTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCGTGC
CGCTAAAGAGTACTTTAAAGGTCCGAGTTTTCCTATGATTTCAGCCGTGGGACCAAATGC
AACAATACTTCACTATTCACCTGAAGCAAGTTCATGTGCTGAACTTGATACTGATAAAAT
ATATCTGTTTGACACTGGGGCTCAGTATCTTGATGGTACTACAGACATCACAAGAACTGT
ACATTTTGGCAAACCATCTGAGCATGAAAAGTCATGCTACACAGCTGTGTTGAAAGGCCA
CATTGCACTAGACACTGCTGTATTTCCTAATGGAACCACAGGGCATGCTCTTGATATTCT
CGCACGGACACCACTTTGGAAAAGTGGTCTTGATTATCGGCACGGCACAGGCCATGGGGT
TGGATCTTATTTGACTGTTCATGAAGGTCCTCATCAAATTAGCTTCAGACCTTCTGCTAG
AAATGTACCACTACAAGCATCGATGACTGTAACAGATGAACCTGGTTACTATCAAGATGG
AAGCTTTGGTATAAGGTTGGAGAATGTTCTGATAGTTCAAGATGCCAATACTAAATTTAA
TTTTGGAGATAAGGGTTATTTGGCATTTGAACATATAACATGGGCTCCGTACCAGACAAA
GCTGATTGACGCCACTTTGCTGGCCCCTGCCGAGATTGAATGGGTAAACACGTATCACTC
AGATTGCCGAAGGATTTTGCAGCCTTACCTGAATGAGCAGGAGAAGGAATGGCTGAGGAA
AGCTACTGAGCCTATTACTGTGAGCTGTTAAGCCATCGACTACATGAGCACATGGCACAG
GGTCTCAACCAGTTGCAGCCATTCGTGCTAGATGTGCAGAAGTGCAGATGGTTTCTGACA
TGCCATGCTTTGCCTTGGGTTGAATGCGAAGATATGGAAGTAGAAATAGGACTAGAGGAC
TGGCCGCTTACCTAGTCCCTACCATGAATATGGGCTGTGTTTGAATCCAAACTTCAGTCC
TTTTCCATCACATCAACTTGTCATACACATACAACTTCTCAGTCACATCATCTTCAATTC
CAACTAAAATTCAAACTTTACGCTGAACTAAACACTAGTTGTGTTTGTACGGTTCTCCAG
ACGTTGCTTGAATGCCTTGTGGGCATTTGTATCGTGATGTATCGAGCGGCGAGTAATTGC
AGTGTAATAATAAGCGGCCATGTCTGGTGATAAGCTGTTGTTTAAAATTGTATCTCACAT
CAACCCTGCCTCACGGCTTTGAAACTGAGCGACGCCGGTAACAAAAGGGGAAAGTCTATT