Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0539000-01
CDS Infomation	cds chromosome:IRGSP-1.0:11:19656814:19658769:1 gene:Os11g0539000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA262 description:F-box domain, cyclin-like domain containing protein. (Os11t0539000-01)
Sequence	ATTTCCACCGCCTTCGCCTTCGCGAGATCGGATCACGGCGGCGTCGACCGCATATCGGCG CTCCCCGACGACCTCATCCAGCGCATCCTCCGCTTCGCGCCGGCCAACGAGGCCGCGTCC ACCGCCCTGCTCTCAGCGCGGTGGCGCTCGCTCTGGCGCTCCACCGGCGCCGTCAACCTC GCCGTGCGCCTCCCCGAGCCCGACGACGGGCGCCGCCACGGCCACCGCGTCAGCCACGAC GCCGTCTCCTCCTGCCATGACGCCTTCGTCCGCTCCGCGCAGGCGGCGCTCTCCGCCGCC GCCGCCGCAGCCGGAGGCCGAGGCCGCCACGTCACGAGGCTCACCTTGGACCTTCGGGCG GCGACCATGGATGTGATCGACAGGTTCGTGCACACGGAGAGGCCGCTTGGTGCGGACGCG GCGCCCGACACGGACGTGTGGCTGCGGCTCAGCGACGACGTCGAGCGAGAGGCGGACAGA TGGGTGAAGAGGGGAGACGTGGTCCGCGACGTGGTCTCCCACCCGGCGGCGCGCCGCGTG GAGGAGCTCCGCATCAGCGCCAGCGCGCCGGCCGTCGACGACGACGACGACGACGGCGAG GTCGGGCGTCTCGTCGGGGTGTTCCACCTGGACCTCCGCTACGTCCCGTCGGAGACCCTC CGCGTGCTGGACCTCTCCCGGTGCAGCGGCCTGCGCATGCCGCCCGCCGTGGAAACCCCG CGGCTGACGACGCTGCGGCTGCAGGCCTGCGCCGTGAACGTGAACGACCTGCAGCGCGTC ATCGACGCCGCGCCGGCGCTCGCCACCGTGCACCTCGACTCCGTCTCCTTCGACGGGATG GAGCACGGCTGCTACCGCCTCCGCCTCCCGGCGGCCACCACCGCGCTCGTGCTGGCGAGG TGCAGGACGGACGCGGAGCCCTACCGCTACCGGAGAAGCGGCCGCCCACTGGGGACCAGC TCCGTCGAGATCGACGCGCCGGGGCTCCGATCGTTCAGGTACGCGGGCTACGCGCGGCGC TTCTCCCTCGCCTCGCCGCCGGACATGGCGCGTGCCGACCTCCACTTCTTCCACGACATG TACGCCTCCGCCTCCACGAGCCGCGACCTCTTCTGGCGCTTCGTCCGCAGCTTCCGCGGC ATCAGGTCCCTCAAGCTCAAGGTGAGCGACCTCAAGCACGTCGCCGTCGCCGGCAGGGCG ACGCGCGCCGAGCTCCTCGTCGCGTTCCCCAACGTCGAGCACCTCGAGCTGGAAGGGCAC CACGAATCCGCGAGCGAGACGGCCGCCGCGGTGGCCATCGGCAACCTGCTCCGGTGCTGC CCCGCCGCGCGCCACCTCGCGCTCCACCTCGCCACGGCGCCGCCGCGCGAGCGCGACTCC GCCATGAACGGCAGGTACGGCCGCGATCTCCTGCGAGCGAGACAGCAAGCCGACCTCGCC GAGTCTCTCGATCGCTTCGCTCGCCGCCGCCGACGCAAACCCAATCCTCCGCCGCCGCCG CCGCCGCCGACGCCGGTGAACTCCATGGACGAACACCTGAGCATCGTAGGATTGAGTGGC CGATCCTTCGCCTGCTTGAAGAACTCGCTGAGAAGATTCGTAATCCAGTTTCGGATGGAT CGACCCAACTGCATTGGCGTCAAGCTGATCAAGTTCTTCGCCGAGAACGCGATTCACCTC GAAGAGATGCGCATCGACGGTGGAAATCAGAGGATGCACGATCACATCAACCACATGGTT GAGGGATGGATCTCCGATTCATCGTCAGCGAAAAAGAGGGCGAATCACGAGAGTTCGCAG GGTATCGACGCGAGTACGCCACGCTTTAGATTATTACCCCTTGAGAGACGGTGA

Peptide Sequence

PEP ID	Os11t0539000-01
PEP Infomation	pep chromosome:IRGSP-1.0:11:19656814:19658769:1 gene:Os11g0539000 transcript:Os11t0539000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA262 description:F-box domain, cyclin-like domain containing protein. (Os11t0539000-01)
Sequence	ISTAFAFARSDHGGVDRISALPDDLIQRILRFAPANEAASTALLSARWRSLWRSTGAVNL AVRLPEPDDGRRHGHRVSHDAVSSCHDAFVRSAQAALSAAAAAAGGRGRHVTRLTLDLRA ATMDVIDRFVHTERPLGADAAPDTDVWLRLSDDVEREADRWVKRGDVVRDVVSHPAARRV EELRISASAPAVDDDDDDGEVGRLVGVFHLDLRYVPSETLRVLDLSRCSGLRMPPAVETP RLTTLRLQACAVNVNDLQRVIDAAPALATVHLDSVSFDGMEHGCYRLRLPAATTALVLAR CRTDAEPYRYRRSGRPLGTSSVEIDAPGLRSFRYAGYARRFSLASPPDMARADLHFFHDM YASASTSRDLFWRFVRSFRGIRSLKLKVSDLKHVAVAGRATRAELLVAFPNVEHLELEGH HESASETAAAVAIGNLLRCCPAARHLALHLATAPPRERDSAMNGRYGRDLLRARQQADLA ESLDRFARRRRRKPNPPPPPPPPTPVNSMDEHLSIVGLSGRSFACLKNSLRRFVIQFRMD RPNCIGVKLIKFFAENAIHLEEMRIDGGNQRMHDHINHMVEGWISDSSSAKKRANHESSQ GIDASTPRFRLLPLERR

Transcript Sequence

Transcript ID	Os11t0539000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:19656814:19658769:1 gene:Os11g0539000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA262 description:F-box domain, cyclin-like domain containing protein. (Os11t0539000-01)
Sequence	GCGTTGCGCCACGGATAAATTTCCACCGCCTTCGCCTTCGCGAGATCGGATCACGGCGGC GTCGACCGCATATCGGCGCTCCCCGACGACCTCATCCAGCGCATCCTCCGCTTCGCGCCG GCCAACGAGGCCGCGTCCACCGCCCTGCTCTCAGCGCGGTGGCGCTCGCTCTGGCGCTCC ACCGGCGCCGTCAACCTCGCCGTGCGCCTCCCCGAGCCCGACGACGGGCGCCGCCACGGC CACCGCGTCAGCCACGACGCCGTCTCCTCCTGCCATGACGCCTTCGTCCGCTCCGCGCAG GCGGCGCTCTCCGCCGCCGCCGCCGCAGCCGGAGGCCGAGGCCGCCACGTCACGAGGCTC ACCTTGGACCTTCGGGCGGCGACCATGGATGTGATCGACAGGTTCGTGCACACGGAGAGG CCGCTTGGTGCGGACGCGGCGCCCGACACGGACGTGTGGCTGCGGCTCAGCGACGACGTC GAGCGAGAGGCGGACAGATGGGTGAAGAGGGGAGACGTGGTCCGCGACGTGGTCTCCCAC CCGGCGGCGCGCCGCGTGGAGGAGCTCCGCATCAGCGCCAGCGCGCCGGCCGTCGACGAC GACGACGACGACGGCGAGGTCGGGCGTCTCGTCGGGGTGTTCCACCTGGACCTCCGCTAC GTCCCGTCGGAGACCCTCCGCGTGCTGGACCTCTCCCGGTGCAGCGGCCTGCGCATGCCG CCCGCCGTGGAAACCCCGCGGCTGACGACGCTGCGGCTGCAGGCCTGCGCCGTGAACGTG AACGACCTGCAGCGCGTCATCGACGCCGCGCCGGCGCTCGCCACCGTGCACCTCGACTCC GTCTCCTTCGACGGGATGGAGCACGGCTGCTACCGCCTCCGCCTCCCGGCGGCCACCACC GCGCTCGTGCTGGCGAGGTGCAGGACGGACGCGGAGCCCTACCGCTACCGGAGAAGCGGC CGCCCACTGGGGACCAGCTCCGTCGAGATCGACGCGCCGGGGCTCCGATCGTTCAGGTAC GCGGGCTACGCGCGGCGCTTCTCCCTCGCCTCGCCGCCGGACATGGCGCGTGCCGACCTC CACTTCTTCCACGACATGTACGCCTCCGCCTCCACGAGCCGCGACCTCTTCTGGCGCTTC GTCCGCAGCTTCCGCGGCATCAGGTCCCTCAAGCTCAAGGTGAGCGACCTCAAGCACGTC GCCGTCGCCGGCAGGGCGACGCGCGCCGAGCTCCTCGTCGCGTTCCCCAACGTCGAGCAC CTCGAGCTGGAAGGGCACCACGAATCCGCGAGCGAGACGGCCGCCGCGGTGGCCATCGGC AACCTGCTCCGGTGCTGCCCCGCCGCGCGCCACCTCGCGCTCCACCTCGCCACGGCGCCG CCGCGCGAGCGCGACTCCGCCATGAACGGCAGGTACGGCCGCGATCTCCTGCGAGCGAGA CAGCAAGCCGACCTCGCCGAGTCTCTCGATCGCTTCGCTCGCCGCCGCCGACGCAAACCC AATCCTCCGCCGCCGCCGCCGCCGCCGACGCCGGTGAACTCCATGGACGAACACCTGAGC ATCGTAGGATTGAGTGGCCGATCCTTCGCCTGCTTGAAGAACTCGCTGAGAAGATTCGTA ATCCAGTTTCGGATGGATCGACCCAACTGCATTGGCGTCAAGCTGATCAAGTTCTTCGCC GAGAACGCGATTCACCTCGAAGAGATGCGCATCGACGGTGGAAATCAGAGGATGCACGAT CACATCAACCACATGGTTGAGGGATGGATCTCCGATTCATCGTCAGCGAAAAAGAGGGCG AATCACGAGAGTTCGCAGGGTATCGACGCGAGTACGCCACGCTTTAGATTATTACCCCTT GAGAGACGGTGAAATTGGATTGTGGTGTTAGCAAGATGTGGATTGCAATTCGATAAACTA TTGTTAATTTGGATTGTCGAATGTTCTTGAAATTGT