Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0538900-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:19649312:19655845:1 gene:Os11g0538900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Citrate synthase. (Os11t0538900-01)
Sequence

GAGCGGCGGCGGGTGCCGTCGTCCTGCTGCTTCCCTTCCGCCTCCGGTCCACCCCTGCAG
GCGGCGATGGCGTTCTTCCGGGGCCTGACCGCGGTTTCGAGGATTCGATCCCGCATGGCA
CAGGAGGCCACCACGCTTGGTGGTGTGAGATGGCTGCAGATGCAGAGTCCATCTGATCTT
GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAGGATCGCTTAAAGAAACTT
AAATCAGAACATGGGAAGGTCCAGCTTGGAAACATAACTGTTGATATGGTCCTTGGCGGG
ATGAGAGGAATGATTGGAATGCTTTGGGAAACATCATTGCTTGACCCGGAGGAGGGTATT
CGTTTCAGGGGTCTCTCGATTCCAGAGTGCCAGAAAGTGCTGCCAACAGCAATTAAAGGT
GGAGAACCTTTGCCGGAGGGTCTCCTTTGGCTTCTTTTGACTGGAAAGGTGCCAACCAAA
GAGCAAGTCGATGCTCTATCAAAGGAATTGGTTACCCGTTCGAGTGTTCCAGGCCATGTG
TATAAGGCAATTGATGCTCTCCCTGTAACTGCTCATCCAATGACACAGTTTACCACAGGG
GTGATGGCACTTCAAGTTGAGAGTGAGTTTCAAAAAGCTTACGACAAAGGAATGCCAAAA
TCAAAGTTCTGGGAGCCTACCTATGAAGATTGCTTAAATTTGATAGCTCGCCTTCCACCA
GTGGCTTCGTATGTTTACCGGAGGATCTTCAAGGATGGGAAAACTATAGCAGCTGATAAT
GCACTGGACTATGCAGCAAACTTTTCACACATGCTTGGGTTTGATGATCCCAAAATGCTC
GAGTTGATGCGACTATATGTGACAATCCACACTGATCATGAAGGTGGAAATGTCAGTGCT
CATACTGGACATCTGGTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTTGCAGCTGCA
CTGAATGGTTTAGCTGGACCATTGCACGGCCTGGCTAATCAGGAAGTGCTGTTGTGGATC
AAATCTGTAATAGGTGAGACAGGTAGTGATGTTACAACTGATCAACTCAAAGAGTATGTG
TGGAAGACACTAAAAAGTGGAAAGGTTGTTCCTGGCTTCGGTCATGGAGTTCTACGTAAG
ACCGATCCACGATATACATGTCAGAGGGAGTTTGCTTTGAAGTACTTGCCTGAGGATCCA
CTTTTCCAACTGGTCTCCAAGTTGTATGAAGTTGTGCCTCCAATCCTCACTGAGCTTGGC
AAGGTCAAAAACCCATGGCCTAATGTTGATGCTCACAGTGGAGTTCTGCTGAACCACTTT
GGATTATCTGAAGCTCGGTATTACACCGTCCTTTTCGGAGTTTCGAGGAGCATAGGCATA
GGATCCCAGCTCATTTGGGACCGTGCTCTTGGTCTGCCGCTCGAAAGACCGAAGAGTGTC
ACCATGGAGTGGCTGGAAAACCACTGCAAGAAGGCTGCTGCTTGA

Peptide Sequence

PEP ID

Os11t0538900-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:19649312:19655845:1 gene:Os11g0538900 transcript:Os11t0538900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Citrate synthase. (Os11t0538900-01)
Sequence

ERRRVPSSCCFPSASGPPLQAAMAFFRGLTAVSRIRSRMAQEATTLGGVRWLQMQSPSDL
DLKSQLQELIPEQQDRLKKLKSEHGKVQLGNITVDMVLGGMRGMIGMLWETSLLDPEEGI
RFRGLSIPECQKVLPTAIKGGEPLPEGLLWLLLTGKVPTKEQVDALSKELVTRSSVPGHV
YKAIDALPVTAHPMTQFTTGVMALQVESEFQKAYDKGMPKSKFWEPTYEDCLNLIARLPP
VASYVYRRIFKDGKTIAADNALDYAANFSHMLGFDDPKMLELMRLYVTIHTDHEGGNVSA
HTGHLVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVIGETGSDVTTDQLKEYV
WKTLKSGKVVPGFGHGVLRKTDPRYTCQREFALKYLPEDPLFQLVSKLYEVVPPILTELG
KVKNPWPNVDAHSGVLLNHFGLSEARYYTVLFGVSRSIGIGSQLIWDRALGLPLERPKSV
TMEWLENHCKKAAA

Transcript Sequence

Transcript ID

Os11t0538900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:19649312:19655845:1 gene:Os11g0538900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Citrate synthase. (Os11t0538900-01)
Sequence

CTTCCTGCTTAATGGGCCGGCCTTGTTAGTCGATGGGTCTTCTCCCTCCCCCGTGACTCG
ACGACGGCGAAGGGAAACCCAACCCCATCCATCCCTCTCCTTGCCGCCGCCGTCGACCCG
ATCTCCATCGCTGGCGACGGCGAGCATCGCATCGCATCGCATCGCGGCGGTGCCCAAGCG
AGGCAATCTCCCCGTCCGTCTTCCCTCCCGGCCTCGGATCCCGGAGGAGGTCTCTCCTCC
TCGCTAGGAGCGGCGGCGGGTGCCGTCGTCCTGCTGCTTCCCTTCCGCCTCCGGTCCACC
CCTGCAGGCGGCGATGGCGTTCTTCCGGGGCCTGACCGCGGTTTCGAGGATTCGATCCCG
CATGGCACAGGAGGCCACCACGCTTGGTGGTGTGAGATGGCTGCAGATGCAGAGTCCATC
TGATCTTGATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAGGATCGCTTAAA
GAAACTTAAATCAGAACATGGGAAGGTCCAGCTTGGAAACATAACTGTTGATATGGTCCT
TGGCGGGATGAGAGGAATGATTGGAATGCTTTGGGAAACATCATTGCTTGACCCGGAGGA
GGGTATTCGTTTCAGGGGTCTCTCGATTCCAGAGTGCCAGAAAGTGCTGCCAACAGCAAT
TAAAGGTGGAGAACCTTTGCCGGAGGGTCTCCTTTGGCTTCTTTTGACTGGAAAGGTGCC
AACCAAAGAGCAAGTCGATGCTCTATCAAAGGAATTGGTTACCCGTTCGAGTGTTCCAGG
CCATGTGTATAAGGCAATTGATGCTCTCCCTGTAACTGCTCATCCAATGACACAGTTTAC
CACAGGGGTGATGGCACTTCAAGTTGAGAGTGAGTTTCAAAAAGCTTACGACAAAGGAAT
GCCAAAATCAAAGTTCTGGGAGCCTACCTATGAAGATTGCTTAAATTTGATAGCTCGCCT
TCCACCAGTGGCTTCGTATGTTTACCGGAGGATCTTCAAGGATGGGAAAACTATAGCAGC
TGATAATGCACTGGACTATGCAGCAAACTTTTCACACATGCTTGGGTTTGATGATCCCAA
AATGCTCGAGTTGATGCGACTATATGTGACAATCCACACTGATCATGAAGGTGGAAATGT
CAGTGCTCATACTGGACATCTGGTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTTGC
AGCTGCACTGAATGGTTTAGCTGGACCATTGCACGGCCTGGCTAATCAGGAAGTGCTGTT
GTGGATCAAATCTGTAATAGGTGAGACAGGTAGTGATGTTACAACTGATCAACTCAAAGA
GTATGTGTGGAAGACACTAAAAAGTGGAAAGGTTGTTCCTGGCTTCGGTCATGGAGTTCT
ACGTAAGACCGATCCACGATATACATGTCAGAGGGAGTTTGCTTTGAAGTACTTGCCTGA
GGATCCACTTTTCCAACTGGTCTCCAAGTTGTATGAAGTTGTGCCTCCAATCCTCACTGA
GCTTGGCAAGGTCAAAAACCCATGGCCTAATGTTGATGCTCACAGTGGAGTTCTGCTGAA
CCACTTTGGATTATCTGAAGCTCGGTATTACACCGTCCTTTTCGGAGTTTCGAGGAGCAT
AGGCATAGGATCCCAGCTCATTTGGGACCGTGCTCTTGGTCTGCCGCTCGAAAGACCGAA
GAGTGTCACCATGGAGTGGCTGGAAAACCACTGCAAGAAGGCTGCTGCTTGAAGCTACAC
ACGCCTACACCGCTGCTGTTAATTCTTCTAACAATTATCATCTTGGATGTTAATAACTGA
GGATAAACTCGAAACGTTCAGCCACATTTTAATATTTTTTTCCCAGGCCAATAACTAGAG
GAAGATGCTCTCGATCGGCTGGTACATTTTTGTAGCCATCGCTGTTAGGATGCTCATATA
GTTAATCTGCCATTGGGCAACAATGTGATTAGTTTAAGTTGCTTAGAGCTTTATCCTTTG
ATGAATAACTTTTTCGAGCCTTCTAAGTTAGCTCGAGTTAACATACCAGTTGTGGATTAT
GGCACATTTCTTCATTTCCTTTCTGTTGTTAAATTTACAAGTACGATTCATTTTC