Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0536800-02
CDS Infomation

cds chromosome:IRGSP-1.0:11:19572542:19574828:-1 gene:Os11g0536800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Amidase family protein. (Os11t0536800-01);Similar to predicted protein. (Os11t0536800-02)
Sequence

GATGATTTAGCATACAAACAAGCGAAAGAAGCTGATGACTTGCTGGAGCAAGGAAAATAT
CTTGGTCCCTTACATGGCATTCCGTATGGCCTTAAGGATATAATTGCAGTACCAGAATAC
AAAACTACCTGGGGCTCAAGAACTTTTGAAAACCAAATTCTTGATGTCGAAGCCTCTGTC
TACAAAAGATTGAAGTCAACTGGGGCAGTCCTTGTAGCAAAACTTGTAACAGGCTCGCTC
GCCTATGATGATATATGGTTTGGGGGGAGAACAAGAAACCCCTGGAACATTGAGGAGTTT
TCTACTGGTTCATCAGCAGGGCCAGCAGCTAGCACCTCTGCAGGAATGGTTCCTTTTGCA
ATAGGTTCAGAAACTGCAGGTTCCATAACATATCCTGCCGCTAGATGTGGAGTAACTGCT
TTGCGCACAACATTTGGAACAGTTGCACGGACGGGCGTCATGAGCATTTCAGAGAGCTTG
GATAAACTTGGTCCTTTCTGCAGAAGCGCGATAGATTGCGCAGTTGTACTTGACGCAATT
CGCGGCAAGGATGCCGGCGATCCATCATCTCGTGAAGTTGCTATCGAGGATCCCTTTCAT
GTTGACATCAGACAACTCACTGTTGGATATCTTGACAGTGCTGAGATGGAGGTTGTTCAT
GTTCTTTCCGCTAAGGGTGTTAAGCTAGTGCCTTTCAAGCTGAACTACACCGTTCAATCG
GTCCAATCCATACTGAACATCACCATGGATGTTGACATGCTTGCGCATTTCGACAACTGG
CAACGCGAGCGACACGACGACGACTATGAAGCTCAGGACCAATGGCCAGTGGAGCTTCGC
CGCGCACGGTTAATCCCCGCAGTCGACTATATACAGGCACAACGAGCACGGGGTAAACTG
ATCAGAGAAGTCAGGGAGAGCTTCACGGTCGATGCATTCATCGGCAATGTGACCGACTGG
GAGCTCGTCTGTCTTGGAAACCTTGTGGGGATGCCGGTGGCTGTGGTGCCGACAGGCTTG
AAGAGCATCAAGAACCCACCAGAAGGCGGCACGCGGAGAAGAACCACCGTGACGACGGGC
ATATACGCTCCTCCTGACCATGACCACGTTGCTCTAGCTCTGGCAATGGCGTACCAGTCT
GTGACTGACCACCACAAACAACGCCCAGCGATCGACGATCTAGGACCGGGAGATGACATA
CAGCGGTAA

Peptide Sequence

PEP ID

Os11t0536800-02
PEP Infomation

pep chromosome:IRGSP-1.0:11:19572542:19574828:-1 gene:Os11g0536800 transcript:Os11t0536800-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Amidase family protein. (Os11t0536800-01);Similar to predicted protein. (Os11t0536800-02)
Sequence

DDLAYKQAKEADDLLEQGKYLGPLHGIPYGLKDIIAVPEYKTTWGSRTFENQILDVEASV
YKRLKSTGAVLVAKLVTGSLAYDDIWFGGRTRNPWNIEEFSTGSSAGPAASTSAGMVPFA
IGSETAGSITYPAARCGVTALRTTFGTVARTGVMSISESLDKLGPFCRSAIDCAVVLDAI
RGKDAGDPSSREVAIEDPFHVDIRQLTVGYLDSAEMEVVHVLSAKGVKLVPFKLNYTVQS
VQSILNITMDVDMLAHFDNWQRERHDDDYEAQDQWPVELRRARLIPAVDYIQAQRARGKL
IREVRESFTVDAFIGNVTDWELVCLGNLVGMPVAVVPTGLKSIKNPPEGGTRRRTTVTTG
IYAPPDHDHVALALAMAYQSVTDHHKQRPAIDDLGPGDDIQR

Transcript Sequence

Transcript ID

Os11t0536800-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:19572542:19574828:-1 gene:Os11g0536800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Amidase family protein. (Os11t0536800-01);Similar to predicted protein. (Os11t0536800-02)
Sequence

CTGATGATTTAGCATACAAACAAGCGAAAGAAGCTGATGACTTGCTGGAGCAAGGAAAAT
ATCTTGGTCCCTTACATGGCATTCCGTATGGCCTTAAGGATATAATTGCAGTACCAGAAT
ACAAAACTACCTGGGGCTCAAGAACTTTTGAAAACCAAATTCTTGATGTCGAAGCCTCTG
TCTACAAAAGATTGAAGTCAACTGGGGCAGTCCTTGTAGCAAAACTTGTAACAGGCTCGC
TCGCCTATGATGATATATGGTTTGGGGGGAGAACAAGAAACCCCTGGAACATTGAGGAGT
TTTCTACTGGTTCATCAGCAGGGCCAGCAGCTAGCACCTCTGCAGGAATGGTTCCTTTTG
CAATAGGTTCAGAAACTGCAGGTTCCATAACATATCCTGCCGCTAGATGTGGAGTAACTG
CTTTGCGCACAACATTTGGAACAGTTGCACGGACGGGCGTCATGAGCATTTCAGAGAGCT
TGGATAAACTTGGTCCTTTCTGCAGAAGCGCGATAGATTGCGCAGTTGTACTTGACGCAA
TTCGCGGCAAGGATGCCGGCGATCCATCATCTCGTGAAGTTGCTATCGAGGATCCCTTTC
ATGTTGACATCAGACAACTCACTGTTGGATATCTTGACAGTGCTGAGATGGAGGTTGTTC
ATGTTCTTTCCGCTAAGGGTGTTAAGCTAGTGCCTTTCAAGCTGAACTACACCGTTCAAT
CGGTCCAATCCATACTGAACATCACCATGGATGTTGACATGCTTGCGCATTTCGACAACT
GGCAACGCGAGCGACACGACGACGACTATGAAGCTCAGGACCAATGGCCAGTGGAGCTTC
GCCGCGCACGGTTAATCCCCGCAGTCGACTATATACAGGCACAACGAGCACGGGGTAAAC
TGATCAGAGAAGTCAGGGAGAGCTTCACGGTCGATGCATTCATCGGCAATGTGACCGACT
GGGAGCTCGTCTGTCTTGGAAACCTTGTGGGGATGCCGGTGGCTGTGGTGCCGACAGGCT
TGAAGAGCATCAAGAACCCACCAGAAGGCGGCACGCGGAGAAGAACCACCGTGACGACGG
GCATATACGCTCCTCCTGACCATGACCACGTTGCTCTAGCTCTGGCAATGGCGTACCAGT
CTGTGACTGACCACCACAAACAACGCCCAGCGATCGACGATCTAGGACCGGGAGATGACA
TACAGCGGTAAGCAGTGGCTGGATGACGATGATGGTGTATTTTCATGAAAGCTGAAGTTC
CAGATGATTGACCACTGTGTTAATTTCCTTGAGAAACATGAGATGTAATATATATGAACT
TACAG