Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0533500-02
CDS Infomation	cds chromosome:IRGSP-1.0:11:19433495:19439851:1 gene:Os11g0533500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:retinoblastoma protein homolog 1, etinoblastoma-related 1, retinoblastoma-related protein-2 description:Similar to Retinoblastoma-related protein 2b (Fragment). (Os11t0533500-01);Similar to Retinoblastoma-related protein 2b (Fragment). (Os11t0533500-02)
Sequence	ATGGCGTCGCAGCCTCCCGCCGCCGTGGAGGCTCGTCTCGCGGATCTCTGCAAGGAGCTG GGAGTGGACGAGGGCGTCGCCGGCGAGGCCGCGGCGGTGCTGGAGGAGGGGAAGGGCGCG CTCCTCGCGTCGCCGTCGTTCGGGAGCAAATCGCCCGAGGATGCTGAGAAGCTGTGCTTC GCGTTCGTGCTGTACTGCGTCTCCAAGCTGAAGGAGACCAAGGCGGGTTCCTCCGGCGTT AGGCTCTGGGAGATCTTGAAGGGTTGCAAGCTCAAGTATGATGATTTCTTCAAGGAATCA CAGCGGCTTGCTTCAAGGATCGACCAGGTTTTGGGAAGCCGTTATGGGTCAGATTGGGAA GCTCGGCTAGAGCTGAAGCAATTGGAGAATTTAGTAAATCTATTGGCAGATGCAAGCCGG TTCTATTGCAAAGCATTTAATGAGCTATTCTTGAGCCCAAGTACTGATCAGGAGCCTGGA TCAACTACAAATATTCCTGATTATATCCGTTTTGGGTGGCTGCTCTTCTTAATTCTTCGC TCAAAATCACCCGAACTGTTTAAGGACCTGGTATCCTGCATCCATGGACTAGTTGCCATA TTGGCCATACTTTTAATTCACGTACCTGCTAAATTTAGGAGCTTCACAATTGAAGGTTCT TCTCACTTAATCAAACAAACTGAGAAAGGCGTGGATCTTCTTCCATCGTTATGTCACAAC TATCATACCTCTGAAGACCGCTTGAAAGAAATGATGGGAAAATCTTACAAAGTGATAGAG GTCTTTTTTAGCAGGAAAGCAATAAATGCTTCAGAGTTCAAAACAGTGAATTTGGATAAA ATAGATACAGATGGCCTGATGTATTTCAAAGATCTTGTCGATGATGAGATTTTTCAGTCA AATTTGGAAAAACTGGAGAAGCTAAGTAGTACCACCGGCTGCCAAGGGGAGCTTGATTTG GAAATGTTTTTGACCAGCAATGACTATGTACTCAATGCTGAAAACTCTTCTGGTAGTTCC GCTAATTTTGGCTGCTCAAAGCGTGTGTTTGAAACACTAGCCTCTCCTACAAAGACAATA AAGAATATGTTGGCTGCCCCTAGTTCCCCTTCATCACCTGCCAATGGGGGCTCAATCAAG ATTGTGCAGATGACACCAGTTACTTCTGCCATGACAACTGCTAAGTGGCTACGTGATGTG ATATCTTCATTGCCCGATAAACCTTCCTCTAAGCTTGAAGAGTTCCTTTCGTCCTGCGAT ACGGATTTGACAAGTGATGTAGTAAAAAGGGTCAGCATAATTTTGGAAGCTATTTTTCCA ACCAAGTCTATAGATCGGGGTACTTCCATAGGCCTCAATTGTGCAAACGCATTTGATATT CCATGGGCAGAAGCAAGAAAAATGGAGGCTTCCAAGTTGTATTATAGGGTGCTGGAGGCA ATCTGCAGAGCAGAGTCACAGAACAATAATGTAAATAATTTAACCCCATTGTTGTCAAAT GAACGTTTTCATCGATGCTTGATTGCATGTTCAGCTGAGCTAGTATTGGCAACACATAAG ACAGTCATCATGATGTTTCCTGCTGTCCTGGAGAGTACTGGTTTAACTGCATTTGATTTG AGCAAAATAATTGAGAACTTTGTGAGACATGAAGAAACCCTTCCAAGAGAATTGAAAAGG CATTTAAATTCATTAGAAGAACAGCTATTGGAAAGCATGTCATGGGAGAAAGGTTCATCG TTATATAATTCACTGGTTGTTGCCAGGCCATCACTTTCTACAGAAATAAACAGCCTTGGT CTTTTGGCTGAACCAATGCCATCTCTTGATGGCATAGTAGCACGGCAGAGTATTCACCCT GATGGCTTGCCACCTACTCCCTCAAAAAGATGGCCTTCTGCTGGCCCAGATGGCAACTGT TATCCTCAATCACCAAAGAGATTATGCACCGAATCTAGGAACTCATTGGTAGAGCGCAAT TCGCAGACACCACCCCCAAAGCAAAGCCAAACAGGGTTAAGTATTTTGAAAGCAAAATAC CATCCTCTCCAGGCAACATTCGCAAGCCCCACTGTCAGTAATCCTGTTAGTGGGAATGAA AAATGTGCTGTAGTAGGGGTCCAGATCTTCTTTTCCAAAATCTTGAAGTTGGCTGCTATT AGAATAAGAAACCTATGTGAAAGGCTACGACATGAAGAGCTGACTGTGAGCGTCTATAAT ATCTTTAAGCAGATTCTTGACCAACAGACAGCTTTATTTTTCAACAGACACGTTGACCAA ATCATTCTTTGCTGCCTCTATGGTGTTGCCAAGGTTTCTCAATTATCATTGACGTTCAAG GAGATCGTCAACAATTATAAGAGGGAGCCACAATGTAAACCAGAAGTTTTCAGAAGTATC TTTGTTGGGAGTACAAATCGCAATGGTGGATTTGGATCACGTCATGTTGATATCATTGTT TTTTATAATCAAGTATTTGTTCCCACGGTCAAACCTTTGCTGGTGGCTCTAATGCCTTCT AGTACTCGTCCTGAAGACAAGAGGAACACTAATAGCCAAATTCCTGGATCACCCAAGTCA TCTCCTTTCTCAAATTTACCAGATATGTCCCCGAAGAAAGTCTCATCTTCTCATAATGTG TATGTCTCTCCTCTACGACAAACTAAGATGGATGCATTGCTTTCACCAAGTTCACGGAGT TTCTACGCGTGCATCGGTGAAAGCACTCAAGCTTTTCAGAGCCCATCCAAGGATCTGGCT GCTATAAATAGCCGCCTAAATTACCCTACCAGGAGAATCAACACACGAATAAACTTCGAC ATGGTGAGTGACTCGGTGGTGGCTGGTAGTCTGGGCCAACCCAATGGTGGTTCTGCCTCT TCGGATCCTGCTGCTGCATTTAGCCCCCTCTCAAAGAAGAGCAAAACGGACTCTTGA

Peptide Sequence

PEP ID	Os11t0533500-02
PEP Infomation	pep chromosome:IRGSP-1.0:11:19433495:19439851:1 gene:Os11g0533500 transcript:Os11t0533500-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:retinoblastoma protein homolog 1, etinoblastoma-related 1, retinoblastoma-related protein-2 description:Similar to Retinoblastoma-related protein 2b (Fragment). (Os11t0533500-01);Similar to Retinoblastoma-related protein 2b (Fragment). (Os11t0533500-02)
Sequence	MASQPPAAVEARLADLCKELGVDEGVAGEAAAVLEEGKGALLASPSFGSKSPEDAEKLCF AFVLYCVSKLKETKAGSSGVRLWEILKGCKLKYDDFFKESQRLASRIDQVLGSRYGSDWE ARLELKQLENLVNLLADASRFYCKAFNELFLSPSTDQEPGSTTNIPDYIRFGWLLFLILR SKSPELFKDLVSCIHGLVAILAILLIHVPAKFRSFTIEGSSHLIKQTEKGVDLLPSLCHN YHTSEDRLKEMMGKSYKVIEVFFSRKAINASEFKTVNLDKIDTDGLMYFKDLVDDEIFQS NLEKLEKLSSTTGCQGELDLEMFLTSNDYVLNAENSSGSSANFGCSKRVFETLASPTKTI KNMLAAPSSPSSPANGGSIKIVQMTPVTSAMTTAKWLRDVISSLPDKPSSKLEEFLSSCD TDLTSDVVKRVSIILEAIFPTKSIDRGTSIGLNCANAFDIPWAEARKMEASKLYYRVLEA ICRAESQNNNVNNLTPLLSNERFHRCLIACSAELVLATHKTVIMMFPAVLESTGLTAFDL SKIIENFVRHEETLPRELKRHLNSLEEQLLESMSWEKGSSLYNSLVVARPSLSTEINSLG LLAEPMPSLDGIVARQSIHPDGLPPTPSKRWPSAGPDGNCYPQSPKRLCTESRNSLVERN SQTPPPKQSQTGLSILKAKYHPLQATFASPTVSNPVSGNEKCAVVGVQIFFSKILKLAAI RIRNLCERLRHEELTVSVYNIFKQILDQQTALFFNRHVDQIILCCLYGVAKVSQLSLTFK EIVNNYKREPQCKPEVFRSIFVGSTNRNGGFGSRHVDIIVFYNQVFVPTVKPLLVALMPS STRPEDKRNTNSQIPGSPKSSPFSNLPDMSPKKVSSSHNVYVSPLRQTKMDALLSPSSRS FYACIGESTQAFQSPSKDLAAINSRLNYPTRRINTRINFDMVSDSVVAGSLGQPNGGSAS SDPAAAFSPLSKKSKTDS

Transcript Sequence

Transcript ID	Os11t0533500-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:19433495:19439851:1 gene:Os11g0533500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:retinoblastoma protein homolog 1, etinoblastoma-related 1, retinoblastoma-related protein-2 description:Similar to Retinoblastoma-related protein 2b (Fragment). (Os11t0533500-01);Similar to Retinoblastoma-related protein 2b (Fragment). (Os11t0533500-02)
Sequence	CTCGATCCCCAAATCCCCCAAACCCTAGCTCGCCGGAGCAGTGGAGGGCCTCGCCGCCGT GCTGCCTCTTGGCCCCTCCGTGTGATGCCACTGAGTGCGCGTGGGTGGGTGTGCGTGTTG TAGCTCTTTCATGGCGTCGCAGCCTCCCGCCGCCGTGGAGGCTCGTCTCGCGGATCTCTG CAAGGAGCTGGGAGTGGACGAGGGCGTCGCCGGCGAGGCCGCGGCGGTGCTGGAGGAGGG GAAGGGCGCGCTCCTCGCGTCGCCGTCGTTCGGGAGCAAATCGCCCGAGGATGCTGAGAA GCTGTGCTTCGCGTTCGTGCTGTACTGCGTCTCCAAGCTGAAGGAGACCAAGGCGGGTTC CTCCGGCGTTAGGCTCTGGGAGATCTTGAAGGGTTGCAAGCTCAAGTATGATGATTTCTT CAAGGAATCACAGCGGCTTGCTTCAAGGATCGACCAGGTTTTGGGAAGCCGTTATGGGTC AGATTGGGAAGCTCGGCTAGAGCTGAAGCAATTGGAGAATTTAGTAAATCTATTGGCAGA TGCAAGCCGGTTCTATTGCAAAGCATTTAATGAGCTATTCTTGAGCCCAAGTACTGATCA GGAGCCTGGATCAACTACAAATATTCCTGATTATATCCGTTTTGGGTGGCTGCTCTTCTT AATTCTTCGCTCAAAATCACCCGAACTGTTTAAGGACCTGGTATCCTGCATCCATGGACT AGTTGCCATATTGGCCATACTTTTAATTCACGTACCTGCTAAATTTAGGAGCTTCACAAT TGAAGGTTCTTCTCACTTAATCAAACAAACTGAGAAAGGCGTGGATCTTCTTCCATCGTT ATGTCACAACTATCATACCTCTGAAGACCGCTTGAAAGAAATGATGGGAAAATCTTACAA AGTGATAGAGGTCTTTTTTAGCAGGAAAGCAATAAATGCTTCAGAGTTCAAAACAGTGAA TTTGGATAAAATAGATACAGATGGCCTGATGTATTTCAAAGATCTTGTCGATGATGAGAT TTTTCAGTCAAATTTGGAAAAACTGGAGAAGCTAAGTAGTACCACCGGCTGCCAAGGGGA GCTTGATTTGGAAATGTTTTTGACCAGCAATGACTATGTACTCAATGCTGAAAACTCTTC TGGTAGTTCCGCTAATTTTGGCTGCTCAAAGCGTGTGTTTGAAACACTAGCCTCTCCTAC AAAGACAATAAAGAATATGTTGGCTGCCCCTAGTTCCCCTTCATCACCTGCCAATGGGGG CTCAATCAAGATTGTGCAGATGACACCAGTTACTTCTGCCATGACAACTGCTAAGTGGCT ACGTGATGTGATATCTTCATTGCCCGATAAACCTTCCTCTAAGCTTGAAGAGTTCCTTTC GTCCTGCGATACGGATTTGACAAGTGATGTAGTAAAAAGGGTCAGCATAATTTTGGAAGC TATTTTTCCAACCAAGTCTATAGATCGGGGTACTTCCATAGGCCTCAATTGTGCAAACGC ATTTGATATTCCATGGGCAGAAGCAAGAAAAATGGAGGCTTCCAAGTTGTATTATAGGGT GCTGGAGGCAATCTGCAGAGCAGAGTCACAGAACAATAATGTAAATAATTTAACCCCATT GTTGTCAAATGAACGTTTTCATCGATGCTTGATTGCATGTTCAGCTGAGCTAGTATTGGC AACACATAAGACAGTCATCATGATGTTTCCTGCTGTCCTGGAGAGTACTGGTTTAACTGC ATTTGATTTGAGCAAAATAATTGAGAACTTTGTGAGACATGAAGAAACCCTTCCAAGAGA ATTGAAAAGGCATTTAAATTCATTAGAAGAACAGCTATTGGAAAGCATGTCATGGGAGAA AGGTTCATCGTTATATAATTCACTGGTTGTTGCCAGGCCATCACTTTCTACAGAAATAAA CAGCCTTGGTCTTTTGGCTGAACCAATGCCATCTCTTGATGGCATAGTAGCACGGCAGAG TATTCACCCTGATGGCTTGCCACCTACTCCCTCAAAAAGATGGCCTTCTGCTGGCCCAGA TGGCAACTGTTATCCTCAATCACCAAAGAGATTATGCACCGAATCTAGGAACTCATTGGT AGAGCGCAATTCGCAGACACCACCCCCAAAGCAAAGCCAAACAGGGTTAAGTATTTTGAA AGCAAAATACCATCCTCTCCAGGCAACATTCGCAAGCCCCACTGTCAGTAATCCTGTTAG TGGGAATGAAAAATGTGCTGTAGTAGGGGTCCAGATCTTCTTTTCCAAAATCTTGAAGTT GGCTGCTATTAGAATAAGAAACCTATGTGAAAGGCTACGACATGAAGAGCTGACTGTGAG CGTCTATAATATCTTTAAGCAGATTCTTGACCAACAGACAGCTTTATTTTTCAACAGACA CGTTGACCAAATCATTCTTTGCTGCCTCTATGGTGTTGCCAAGGTTTCTCAATTATCATT GACGTTCAAGGAGATCGTCAACAATTATAAGAGGGAGCCACAATGTAAACCAGAAGTTTT CAGAAGTATCTTTGTTGGGAGTACAAATCGCAATGGTGGATTTGGATCACGTCATGTTGA TATCATTGTTTTTTATAATCAAGTATTTGTTCCCACGGTCAAACCTTTGCTGGTGGCTCT AATGCCTTCTAGTACTCGTCCTGAAGACAAGAGGAACACTAATAGCCAAATTCCTGGATC ACCCAAGTCATCTCCTTTCTCAAATTTACCAGATATGTCCCCGAAGAAAGTCTCATCTTC TCATAATGTGTATGTCTCTCCTCTACGACAAACTAAGATGGATGCATTGCTTTCACCAAG TTCACGGAGTTTCTACGCGTGCATCGGTGAAAGCACTCAAGCTTTTCAGAGCCCATCCAA GGATCTGGCTGCTATAAATAGCCGCCTAAATTACCCTACCAGGAGAATCAACACACGAAT AAACTTCGACATGGTGAGTGACTCGGTGGTGGCTGGTAGTCTGGGCCAACCCAATGGTGG TTCTGCCTCTTCGGATCCTGCTGCTGCATTTAGCCCCCTCTCAAAGAAGAGCAAAACGGA CTCTTGATCCAAATAAATGGGTCCATCCATCTGTATAGAGCTCATAATCCCACAGATTGT TTCTTTGGTTCTTCTGAATAAGTGGGTGAAGCAAAGTGCTTCTCGACTGTAAATGTTGTG CTAGTGTTGTAATAGGCTGTAGCAGTGTAAAAGGCGGCTGATTGTCTAGAATTAACTAAT GGGGTGTATCATTTCATTCCCCAGCCGATTCATTAGGAGCGAAGGCTATGTAAAATGCTA CTTCTTTTTCAGTGTGTAAATAA