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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0525800-02
CDS Infomation

cds chromosome:IRGSP-1.0:11:19076618:19079301:-1 gene:Os11g0525800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to retrotransposon protein. (Os11t0525800-01);Similar to ADL308Cp. (Os11t0525800-02)
Sequence

ATGTCGGCGGCGGCGGCGGAGGCCACCGAGCGGGGCGAGCCCTCGGGCGGAGGCGGAGAG
ATCGCGTACGTCAGCTACGGCGGGGAGCACCACCTCCCGCTGGTGATGTCGCTGGTGGAC
GAGGAGCTCAGCGAGCCCTACTCCATCTTCACCTACCGCTACTTCGTCTACCTCTGGCCC
CAGCTCACCTTCCTCGCGTTCGATCCCAAGGATGGCAAGTGCGTGGGGACGGTGGTGTGC
AAGATGGGGGAGCACAGGGGGGCCTTCAGGGGGTACATCGCCATGCTCGTCGTGCTCAAG
CCCTACCGCGGCAGGGGAATCGCCACCGAATTGGTTACGAGATCTATTCGGGTAATGATG
GAATCTGGCTGTGAGGAGGTGACACTTGAAGCAGAAGTTACGAACAAGGGCGCCCTCGCC
TTATATGGTCGTTTGGGTTTCATCCGAGCAAAGAGGCTGTACAGATACTATCTGAATGGC
GTCGACGCATTTCGCCTGAAGCTGCTATTTCCTCGCCCTGATCCTGGTATGCATCCAATG
ATGATGCTAGGCAATGAGAGAGATGACCAGCACATGGATTCTCCTTACTTGTGA

Peptide Sequence

PEP ID

Os11t0525800-02
PEP Infomation

pep chromosome:IRGSP-1.0:11:19076618:19079301:-1 gene:Os11g0525800 transcript:Os11t0525800-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to retrotransposon protein. (Os11t0525800-01);Similar to ADL308Cp. (Os11t0525800-02)
Sequence

MSAAAAEATERGEPSGGGGEIAYVSYGGEHHLPLVMSLVDEELSEPYSIFTYRYFVYLWP
QLTFLAFDPKDGKCVGTVVCKMGEHRGAFRGYIAMLVVLKPYRGRGIATELVTRSIRVMM
ESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLYRYYLNGVDAFRLKLLFPRPDPGMHPM
MMLGNERDDQHMDSPYL

Transcript Sequence

Transcript ID

Os11t0525800-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:19076618:19079301:-1 gene:Os11g0525800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to retrotransposon protein. (Os11t0525800-01);Similar to ADL308Cp. (Os11t0525800-02)
Sequence

GTAGAACGGGCGTGGGGTTCAAGTGCCTCTCCCCAACAGGAGTACCTCGTCGGCGACCTG
CGGCGGCGGCGATGTCGGCGGCGGCGGCGGAGGCCACCGAGCGGGGCGAGCCCTCGGGCG
GAGGCGGAGAGATCGCGTACGTCAGCTACGGCGGGGAGCACCACCTCCCGCTGGTGATGT
CGCTGGTGGACGAGGAGCTCAGCGAGCCCTACTCCATCTTCACCTACCGCTACTTCGTCT
ACCTCTGGCCCCAGCTCACCTTCCTCGCGTTCGATCCCAAGGATGGCAAGTGCGTGGGGA
CGGTGGTGTGCAAGATGGGGGAGCACAGGGGGGCCTTCAGGGGGTACATCGCCATGCTCG
TCGTGCTCAAGCCCTACCGCGGCAGGGGAATCGCCACCGAATTGGTTACGAGATCTATTC
GGGTAATGATGGAATCTGGCTGTGAGGAGGTGACACTTGAAGCAGAAGTTACGAACAAGG
GCGCCCTCGCCTTATATGGTCGTTTGGGTTTCATCCGAGCAAAGAGGCTGTACAGATACT
ATCTGAATGGCGTCGACGCATTTCGCCTGAAGCTGCTATTTCCTCGCCCTGATCCTGGTA
TGCATCCAATGATGATGCTAGGCAATGAGAGAGATGACCAGCACATGGATTCTCCTTACT
TGTGATACCATTCTGGTCGATTGATAGGATGAGTTAGGATCCAAGGCATTTTGCTCTTTT
ATGTCAGTTTGATGATGCTTTTGTAGCTTTGCTGTAACTCTTGTAACATTGATGTGTTCA
AAGATAGTATCTTATTTGACATGGCATTATGTTTCTTTCAATCCATGTTAGACGGTTGAA
AAAGAATGCCTTATTACAT