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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0498600-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:17729083:17730337:1 gene:Os11g0498600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to HVA22 protein. (Os11t0498600-01)
Sequence

ATGGGCAAGCTCTGGACAATCCTCACTCACGTTCATTCCCTTGCAGGGCCTACCGTCATG
CTCCTGTACCCCTTGTATGCGTCGGTGCAGGCCATGGAGAGCCCATCGAAGCTTGACGAC
GAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCGTGGAGATGCTTCTC
GAGTCCCTCATCTACTGGATACCGATCTGGTACGAGCTGAAGCTGCTGTTCATCGCGTGG
CTGGCGCTGCCCAACTTCAGGGGAGCCGCGTTCATCTACAACAGGTTCGTCAGGGAGCAG
CTCAGGAAGCATGGCCTCGCCGGCGCCGGCGCCGGCGCCGCCGCCAGCGTCGGCAAGAAG
GACAAGTCGTCGCCGTCGTCGTCACCCAAGGACAAGGAGAAGACCAAGAGCAAGTTCCTC
TCCTTCGTCACTCCCAAGAAGGATCATGAAGCTTACTGA

Peptide Sequence

PEP ID

Os11t0498600-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:17729083:17730337:1 gene:Os11g0498600 transcript:Os11t0498600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to HVA22 protein. (Os11t0498600-01)
Sequence

MGKLWTILTHVHSLAGPTVMLLYPLYASVQAMESPSKLDDEQWLAYWILYSFITLVEMLL
ESLIYWIPIWYELKLLFIAWLALPNFRGAAFIYNRFVREQLRKHGLAGAGAGAAASVGKK
DKSSPSSSPKDKEKTKSKFLSFVTPKKDHEAY

Transcript Sequence

Transcript ID

Os11t0498600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:17729083:17730337:1 gene:Os11g0498600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to HVA22 protein. (Os11t0498600-01)
Sequence

AATCGATCACTCCACTGGTGAGTAGTGAGTGGCTAGTGACTGGTCAGTTCATCACTTGTG
AAGGTTTTGCAATCAGGAAAAGTTCAGAAGATCATGGGCAAGCTCTGGACAATCCTCACT
CACGTTCATTCCCTTGCAGGGCCTACCGTCATGCTCCTGTACCCCTTGTATGCGTCGGTG
CAGGCCATGGAGAGCCCATCGAAGCTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTC
TACTCCTTCATCACCCTCGTGGAGATGCTTCTCGAGTCCCTCATCTACTGGATACCGATC
TGGTACGAGCTGAAGCTGCTGTTCATCGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCC
GCGTTCATCTACAACAGGTTCGTCAGGGAGCAGCTCAGGAAGCATGGCCTCGCCGGCGCC
GGCGCCGGCGCCGCCGCCAGCGTCGGCAAGAAGGACAAGTCGTCGCCGTCGTCGTCACCC
AAGGACAAGGAGAAGACCAAGAGCAAGTTCCTCTCCTTCGTCACTCCCAAGAAGGATCAT
GAAGCTTACTGAGCCAAGAAGTGCTGATCAGTCGGATCCCTGAAGATAGTTTTTTAGTGT
GTGTACTGTTCCATTTGTGTTTGTCCCTCTTCCTCTCCTTCAGAAGAGGCAGCTAGCTAG
CTTCATGTTTGGCTGGTCTTTTTGGCCATCTGTGCATGTCTGTAAACTTTATTGGAGTGA
GGGGAAAAAAGAGCATAATTAGTTGCTCCATGTTGAGTTGTTAGAGTGGTTTCTTGTAAA
TGTAATTCAGGATCTCAGATGAGCAGACAATAAAAACACACTGTTCC