Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0488900-00
CDS Infomation

cds chromosome:IRGSP-1.0:11:17229938:17231333:1 gene:Os11g0488900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F-box protein 600 description:Similar to MYND finger family protein, expressed. (Os11t0488900-00)
Sequence

ATGAGGAGCCCTAGGAGGCGGCGCGGCGTCCACCCGGCGGCGGCGACGGCGCCGCCGTGT
TCCGCCATGGCGAGCGGCGCGGCGAGCCCTCGCTCGCCGCCAGCGGCGAAGAAGCGGGCG
GTGGTGGTGGCTGGCGACGGCGACGACTCCGACGTGTTCGACCGGCTCCCCGACGACATC
GTCCTCGTCGTGCTCTCCAGGCTCGCCGCCAACGCCGCGTCCCCCGCCGACGTCGCCTCG
GCGGCACTCACGTGCAGGAGGTTCCGGGAGCTCGCGACGCACCCGGCGGTGCTGTCGCGC
GCGTCGGCGGCGGCCGTCGCGGTGCGGTGGGGCGCGTGGTCGGAGGCGGCTCACCGGTTC
TTGCGGCGGTGCGCGGCCGCCGGCAGCCTCCACGCCTGCTACTTCCTCGGCATGGTGAGG
TTCTACTGCCTGGGGAGCAGGGCGACGGGGGCGGCGCTGCTGGGGCGCGCGGCGGGCGGC
GGGCACGCGCCGGCGCTGTACGCGCTGGCGGTGGTGCAGTTCAACGGCAGCGGCGGGGGC
AAGGCGGACAAGGACGCGCGCGCGGGCGTCGCGCTGTGCGCGCGCGCCGCGTGGCTAGGC
CACACCCCGGCGCTCCGCGAGCTCGGCCACTGCCTCCAGGACGGCTACGGCGCCCGCCGC
GACGCCCCCGCCGGCCGCCGCCTCCTCCTCCACGCCGCCGCCCGCGAGCACCTCTCCTGG
AAGAAGCACAACCACGGACACCACGACGGCAGCGCCGCCGAGGACGCGGTGAGCCGGTTC
ATGGTCGCGTGGTGGGACTCGCACCGCGCCAAGGCGGCGGCGCGGGGGTGCCTCCCTGGC
GAACACGGCGACGGCGAGCACGACGGCGGCGAGGACCTGCGGCTGTGCTCGCACGCGCGG
TGCGGGCGGCGGGAGACGCGGCGGCACGAGTTCCGGCGGTGCTCGGTGTGCGGCGCCGCC
AGCTACTGCTCGCGCGCGTGCCAGGCGCTCGACTGGAAGCGCGCCCACCGCGCCCAGTGC
GCCGCCGCGCGCTGGCTCGCCGCGGCCGCCGCCGCCGCCGACGGCGTCGCGCACTGA

Peptide Sequence

PEP ID

Os11t0488900-00
PEP Infomation

pep chromosome:IRGSP-1.0:11:17229938:17231333:1 gene:Os11g0488900 transcript:Os11t0488900-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F-box protein 600 description:Similar to MYND finger family protein, expressed. (Os11t0488900-00)
Sequence

MRSPRRRRGVHPAAATAPPCSAMASGAASPRSPPAAKKRAVVVAGDGDDSDVFDRLPDDI
VLVVLSRLAANAASPADVASAALTCRRFRELATHPAVLSRASAAAVAVRWGAWSEAAHRF
LRRCAAAGSLHACYFLGMVRFYCLGSRATGAALLGRAAGGGHAPALYALAVVQFNGSGGG
KADKDARAGVALCARAAWLGHTPALRELGHCLQDGYGARRDAPAGRRLLLHAAAREHLSW
KKHNHGHHDGSAAEDAVSRFMVAWWDSHRAKAAARGCLPGEHGDGEHDGGEDLRLCSHAR
CGRRETRRHEFRRCSVCGAASYCSRACQALDWKRAHRAQCAAARWLAAAAAAADGVAH

Transcript Sequence

Transcript ID

Os11t0488900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:17229938:17231333:1 gene:Os11g0488900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F-box protein 600 description:Similar to MYND finger family protein, expressed. (Os11t0488900-00)
Sequence

TCTCTCTCTCTCTCTCTCCATCGATCTCTCCTCCTCTCTCTCCAAAGCTCACTGCCCCCG
CGCCACGCGCGTCGCGTCGCGCGCCGGCGAGCCAGCCATGAGGAGCCCTAGGAGGCGGCG
CGGCGTCCACCCGGCGGCGGCGACGGCGCCGCCGTGTTCCGCCATGGCGAGCGGCGCGGC
GAGCCCTCGCTCGCCGCCAGCGGCGAAGAAGCGGGCGGTGGTGGTGGCTGGCGACGGCGA
CGACTCCGACGTGTTCGACCGGCTCCCCGACGACATCGTCCTCGTCGTGCTCTCCAGGCT
CGCCGCCAACGCCGCGTCCCCCGCCGACGTCGCCTCGGCGGCACTCACGTGCAGGAGGTT
CCGGGAGCTCGCGACGCACCCGGCGGTGCTGTCGCGCGCGTCGGCGGCGGCCGTCGCGGT
GCGGTGGGGCGCGTGGTCGGAGGCGGCTCACCGGTTCTTGCGGCGGTGCGCGGCCGCCGG
CAGCCTCCACGCCTGCTACTTCCTCGGCATGGTGAGGTTCTACTGCCTGGGGAGCAGGGC
GACGGGGGCGGCGCTGCTGGGGCGCGCGGCGGGCGGCGGGCACGCGCCGGCGCTGTACGC
GCTGGCGGTGGTGCAGTTCAACGGCAGCGGCGGGGGCAAGGCGGACAAGGACGCGCGCGC
GGGCGTCGCGCTGTGCGCGCGCGCCGCGTGGCTAGGCCACACCCCGGCGCTCCGCGAGCT
CGGCCACTGCCTCCAGGACGGCTACGGCGCCCGCCGCGACGCCCCCGCCGGCCGCCGCCT
CCTCCTCCACGCCGCCGCCCGCGAGCACCTCTCCTGGAAGAAGCACAACCACGGACACCA
CGACGGCAGCGCCGCCGAGGACGCGGTGAGCCGGTTCATGGTCGCGTGGTGGGACTCGCA
CCGCGCCAAGGCGGCGGCGCGGGGGTGCCTCCCTGGCGAACACGGCGACGGCGAGCACGA
CGGCGGCGAGGACCTGCGGCTGTGCTCGCACGCGCGGTGCGGGCGGCGGGAGACGCGGCG
GCACGAGTTCCGGCGGTGCTCGGTGTGCGGCGCCGCCAGCTACTGCTCGCGCGCGTGCCA
GGCGCTCGACTGGAAGCGCGCCCACCGCGCCCAGTGCGCCGCCGCGCGCTGGCTCGCCGC
GGCCGCCGCCGCCGCCGACGGCGTCGCGCACTGAGCGCGACACGTCGCGCATCCATGTAC
AT