Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0487100-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:17180535:17182468:-1 gene:Os11g0487100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os11t0487100-01)
Sequence

ATGTGTGGAGAGATGGAGCATGGGTTTCACCTCCACATGGAGCACCAGGCTATACATGGT
GGAGAATTTAAAGAAGGGATTTGCACGTCGATCCCCAATCCTCCTCTTCCTAGCACATCG
AGACCAAATAGCATGGTCATCAAGAAGGTTTGCCGGCGGGAGTTCATCCCGCCGCACATC
GTGGCGGAGGCGATCTCGACGCTGCGCGGCCTCGACCTCCGGTGGTCGGGTCCCATCACC
CCCGGCGAGCGCCGCTACGTCGAGCAGTACGTCCTCGCCAAGTACCCCCAGTACTCCCAC
GGCCTCATCGGCGACGACGCCTCCGCCTCCGCCTCCGACAGCGACGTCGTCGTCGAGCAG
CAGCGCCGCCTGCAGACGTCGTCGTCGTCGGCGAGGGGAGCGCCGGCGGCGGCGGCGAGG
CTGGAGCCGTCGCGGCTGCTGGACATGCTGGCGAGGAAGGCGTCGTTCCCGGGGAGCTTC
GTCTCCATCCCGGAGATCCAGGCGAGGAACCGCGTCCTCCGACGCTGCGGCCTCGCCGAC
GACGACGACGACTACCTCGTGCTGTTCGCGCCCACGCCCCGCGACGTGCTCGTGCTCGTC
GGCGAGAGCTACCCCTTCTTCCGTGGAAACTACTACATGTCCATCCTCGCCGGCGGCGAG
GCCGACGGCGGCGACTGCGTCCGCGCGTTCGCGGCGTACAAGGACGCGAAGGTGATCGCG
GCGCCGGAGTCGTGGCTGGACCTCCGCATCAAGGGCTCCCAGCTCAGCCAGTACTTCCGC
CGCAAGTGCAAGCACGCGCCCAAGGGGCTCTTCGCCTACCCCGTCGTCGTCTCCGGCCCC
GGCGACGGCTCGGCGGCGGCGGCGGCGGCGAGGTACTCGCTGCACTGGGTGTCGGAGGCG
CACCGGAACGGGTGGCACGTGCTGCTGGACGCCACGGGGCTCGCCGCCGGGGACCGGCTG
CCGCTGTCGCTGCACCGGCCGGACTTCGTGACGTGCGCGCTGGACGACGCGCGCGCGCAG
CCGCCGTCGGCGGCGACGGCGACGGTTACGTGCCTGCTCGTCAGGAGGAGGTCGTTCGAC
GTCACCTCCTTAAAGGGAGATAATTGA

Peptide Sequence

PEP ID

Os11t0487100-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:17180535:17182468:-1 gene:Os11g0487100 transcript:Os11t0487100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os11t0487100-01)
Sequence

MCGEMEHGFHLHMEHQAIHGGEFKEGICTSIPNPPLPSTSRPNSMVIKKVCRREFIPPHI
VAEAISTLRGLDLRWSGPITPGERRYVEQYVLAKYPQYSHGLIGDDASASASDSDVVVEQ
QRRLQTSSSSARGAPAAAARLEPSRLLDMLARKASFPGSFVSIPEIQARNRVLRRCGLAD
DDDDYLVLFAPTPRDVLVLVGESYPFFRGNYYMSILAGGEADGGDCVRAFAAYKDAKVIA
APESWLDLRIKGSQLSQYFRRKCKHAPKGLFAYPVVVSGPGDGSAAAAAARYSLHWVSEA
HRNGWHVLLDATGLAAGDRLPLSLHRPDFVTCALDDARAQPPSAATATVTCLLVRRRSFD
VTSLKGDN

Transcript Sequence

Transcript ID

Os11t0487100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:17180535:17182468:-1 gene:Os11g0487100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os11t0487100-01)
Sequence

ATCTTGCTAGCTAGCTAGATTGCATCTTCTTCCTTCATTTTACTCACAACCTACAAAGTG
AGAGATTATTCTAACTCTAAACCAAGACCATCTCAATTTCTTGCTACTTAAATCTCATCT
TCATCTTCTTCAACCTGTGATCATCATTCAGTAGTTAAAGCTAGTAATAGAGCCACTTGA
CAAGATTGCAGTACACAGATGTGTGGAGAGATGGAGCATGGGTTTCACCTCCACATGGAG
CACCAGGCTATACATGGTGGAGAATTTAAAGAAGGGATTTGCACGTCGATCCCCAATCCT
CCTCTTCCTAGCACATCGAGACCAAATAGCATGGTCATCAAGAAGGTTTGCCGGCGGGAG
TTCATCCCGCCGCACATCGTGGCGGAGGCGATCTCGACGCTGCGCGGCCTCGACCTCCGG
TGGTCGGGTCCCATCACCCCCGGCGAGCGCCGCTACGTCGAGCAGTACGTCCTCGCCAAG
TACCCCCAGTACTCCCACGGCCTCATCGGCGACGACGCCTCCGCCTCCGCCTCCGACAGC
GACGTCGTCGTCGAGCAGCAGCGCCGCCTGCAGACGTCGTCGTCGTCGGCGAGGGGAGCG
CCGGCGGCGGCGGCGAGGCTGGAGCCGTCGCGGCTGCTGGACATGCTGGCGAGGAAGGCG
TCGTTCCCGGGGAGCTTCGTCTCCATCCCGGAGATCCAGGCGAGGAACCGCGTCCTCCGA
CGCTGCGGCCTCGCCGACGACGACGACGACTACCTCGTGCTGTTCGCGCCCACGCCCCGC
GACGTGCTCGTGCTCGTCGGCGAGAGCTACCCCTTCTTCCGTGGAAACTACTACATGTCC
ATCCTCGCCGGCGGCGAGGCCGACGGCGGCGACTGCGTCCGCGCGTTCGCGGCGTACAAG
GACGCGAAGGTGATCGCGGCGCCGGAGTCGTGGCTGGACCTCCGCATCAAGGGCTCCCAG
CTCAGCCAGTACTTCCGCCGCAAGTGCAAGCACGCGCCCAAGGGGCTCTTCGCCTACCCC
GTCGTCGTCTCCGGCCCCGGCGACGGCTCGGCGGCGGCGGCGGCGGCGAGGTACTCGCTG
CACTGGGTGTCGGAGGCGCACCGGAACGGGTGGCACGTGCTGCTGGACGCCACGGGGCTC
GCCGCCGGGGACCGGCTGCCGCTGTCGCTGCACCGGCCGGACTTCGTGACGTGCGCGCTG
GACGACGCGCGCGCGCAGCCGCCGTCGGCGGCGACGGCGACGGTTACGTGCCTGCTCGTC
AGGAGGAGGTCGTTCGACGTCACCTCCTTAAAGGGAGATAATTGAAACGATATGCAGAGC
TAAATTACTTTGTTCCGTTTCAAATTATAAAAACATTTTAGGTTTTGTTTCATGTATGTG
CTTCATTTATACTATGTGTAAATAATTTAAACGAGGGATAAAGAAGCCGAAACTTATCTC