Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0485200-01
CDS Infomation	cds chromosome:IRGSP-1.0:11:17108744:17114089:1 gene:Os11g0485200 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter family protein. (Os11t0485200-01)
Sequence	ATGTCACGCGAGCCTGCGGCGGCGGCGGAGGCGGAGGACGTCGTGGCCCGTCTCGGCACC GACGAGGCGACTGGGCTGACGGAGGAGGAGGCGGCGCGCCGCCTCAAGCTGTACGGGCCT AACCTCGTGGTCGCCCATCACCCCCAGGTGGGTGGCAAGCTTCTTGCTACACTAAAGTGC ATCGTCCTGCTCTGGGGATGGGATCACTCCTTCACCGAGTACATTAAATACGAGATTGGA TGGGAGTCATGGGAGCATCTTATCTTCCCCTGCTCCAGGGAGATGTTATGTGTCATGTTC ATCAATTTCTCGTCATGGGCGGCATTGGCGGCTGCACTTGTGTCCCTTGCCCTTAACTCA GCTGGTCAGACAACCTATGAACTGATCGTTATCGTCTCCTTACTTGTGGGAAGCCTGTGT GCATGCTGTGTTGCCAAGCTCCTTGCCAATCGTGCTAAGGCACCGCTGGAAGCTAAAGCT TTTGCGCGAAGGACCAAGGTTCTGAGGGATGGAATATGGAAACATGAGGATGCGACCAAT CTTGTCCCTGGGGATATCATATATCTCAAGTGTGGTGATATTGTGCCAGCCAATGCTTTT GTCCTCAACATGGCACAGATCGACACCAAAACCATCCGTCATGAAAGGAGTGTTAACTAT GTGATGGGCTCCCTTATATACTATGGCTGGGCTGTCTCCTGTGGCGAAGGGACTGCTGTT GTTACTGTGACAGGCAATAACATCCCCATGAGCACTCTGAAACAGCTTTATCCAAAACGA TTCTCTCGGCCTGGGCAGCTTAGGAAGGGTGTCATGGCTGCTGCCACTTTTTGCTTCTGC TTAGTACTTGTTGGCATCACAAGTGAGGCTCTTGTTAAATTCTTTTTCCATCAAAGCATA GGCACGCTGCACAGTGGCCACTTTATGCCACTTATTGGTCTAATACCAATGTCGATTCCT GCTGTGCTCTACCTGGCATTGGCATTGGACTCTCAGAGGCTTTCCAAATTGGGGGTTGCC AGCCGGGGAACTTTTGCTCTTGAAGACTTGGCTAGCATGGATGCTATGCTCTTCAACATG ACTGGCACTTTGACATGCAACAAGCCCTATTTTGACAAGGACAAGATTGAAGTGCTTACA GAAGGTATTGATAAAGATCATGCTGTCCTGTTGGCTGCGCGGGCTTCCAAAGCACACAAT GAACTGTATAAAGAACCGATTGATGCAGCCATTCTAGGCCTTATGGATGATCCAGAACAG GCACGAGTTGGCATTAATGTTATAGAGCACCGCTCCCGTATGTTTGTTGCAATGACATTG ATGTACATGACTACTTACATCGATGAAAATGGCTCCAAGTGTTCTGTGCTCAAAGGTGAC CCTGCATTGATGCTTCGTGACTGCAGTTGTAGCGAAGAAGTCAGAGAGCATATACGCAAA CGTATTGATAAGCTCGGTCTTGATGGATATCAATGTATTGCTGTTGGACGTATTGTTAAC TCTCGGTTGGACATCATTATTCTTCTACCTTTCATAGATGATCTCAGAAGCGATAGTGCA GAAGCTGTTGATAATCTTACTGATATGGGTCTGAGTGTAATAGTACTTACAGAAAGCCCA ATGACAATTACAAAGCACGTATGTGGAAGACTTGGAAAACTGGGCTTAAATGTGTTACAT GCTGACTCTATGCGGGAGTTGGTAAGCAGCAAAAATGAGCTTTTCTTGAATATCAATGGG ATTTCTGATCTCTTTGTAGAATATAACCGTTATGTTATATCAAATCTGAGAACTTATTTT GGTCGTCGTAGTGCAATGGTTGGATATGAATTTTCGGATGTTGATTCTATCCGTGAAAGC GATATTGGAATCGCAGTTGCCGATGCCACTGATAGCACCAAAAGTGAATCTGATATTGTT TTGACTGAGCATGCCTTGCTGTCTGTTTCTTCTGCTGTTCAAGCCAGTAGGGAAATTTGT CAGATCATGAAAGGATGCATGGTTTATGCTGTTTCATCAACTGTCCATGCTTTTGCTGTC CGTCTTATTTTACTCCTATGGAGACTCGAGCTACCCTGTTTCCCGATGCTGGTGATTGCT GCTTGCAACTACTGCACATCAACTGCAATGTTATTTGAAAGGGTGAAACCATCCCAGTCA CCAGATAGTTTGAAAGCAAACAAGATTATCGCAACTGGTGCTGCTTTTGGAAGCTATATT GCCCTGAGTACAGTCGTTTTTTTCATAATGACTACTAGGACTGACTTCATATCTCACATA ATCAAAGCTAGATTGCTTGTTGGCCATGATGAGGAGATTAAATCTGCCTTATTCCTTCAA ATGAGCATTGTTAACCATGCTATTGGACTTTTCGCACATTCACGCGATGGCCACTGCTCT GGGCCTATTGTTACAATTTCTTCTGTTCTATCTCAACTGGTGGCAACCGTCATTGCTGTT TATGGTGACGTGAACTCTCCTCTACCAAAGGGCATTGGCTGGGGCTGGGCAGGATTTATC TGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCTGTGACCTGTGTAACCTT GCAAAGTTCAACATATTTGGGATAACCTGCAGGAGGCTGTTCACTGGTTGGACCGAGTGG ATGGAGAGGTGCAGGAGGCTGCTCAACAGGGGTAAAACGTGGATGGAGATGTTGACCTTA ACTGCTATCTCAGGCTTGATTCTTGTCTGGTCGATATATGCATATCATGTCATGAAGGTC CCGCAGCAGTAG

Peptide Sequence

PEP ID	Os11t0485200-01
PEP Infomation	pep chromosome:IRGSP-1.0:11:17108744:17114089:1 gene:Os11g0485200 transcript:Os11t0485200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter family protein. (Os11t0485200-01)
Sequence	MSREPAAAAEAEDVVARLGTDEATGLTEEEAARRLKLYGPNLVVAHHPQVGGKLLATLKC IVLLWGWDHSFTEYIKYEIGWESWEHLIFPCSREMLCVMFINFSSWAALAAALVSLALNS AGQTTYELIVIVSLLVGSLCACCVAKLLANRAKAPLEAKAFARRTKVLRDGIWKHEDATN LVPGDIIYLKCGDIVPANAFVLNMAQIDTKTIRHERSVNYVMGSLIYYGWAVSCGEGTAV VTVTGNNIPMSTLKQLYPKRFSRPGQLRKGVMAAATFCFCLVLVGITSEALVKFFFHQSI GTLHSGHFMPLIGLIPMSIPAVLYLALALDSQRLSKLGVASRGTFALEDLASMDAMLFNM TGTLTCNKPYFDKDKIEVLTEGIDKDHAVLLAARASKAHNELYKEPIDAAILGLMDDPEQ ARVGINVIEHRSRMFVAMTLMYMTTYIDENGSKCSVLKGDPALMLRDCSCSEEVREHIRK RIDKLGLDGYQCIAVGRIVNSRLDIIILLPFIDDLRSDSAEAVDNLTDMGLSVIVLTESP MTITKHVCGRLGKLGLNVLHADSMRELVSSKNELFLNINGISDLFVEYNRYVISNLRTYF GRRSAMVGYEFSDVDSIRESDIGIAVADATDSTKSESDIVLTEHALLSVSSAVQASREIC QIMKGCMVYAVSSTVHAFAVRLILLLWRLELPCFPMLVIAACNYCTSTAMLFERVKPSQS PDSLKANKIIATGAAFGSYIALSTVVFFIMTTRTDFISHIIKARLLVGHDEEIKSALFLQ MSIVNHAIGLFAHSRDGHCSGPIVTISSVLSQLVATVIAVYGDVNSPLPKGIGWGWAGFI WLYNFVLLLSLMLICDLCNLAKFNIFGITCRRLFTGWTEWMERCRRLLNRGKTWMEMLTL TAISGLILVWSIYAYHVMKVPQQ

Transcript Sequence

Transcript ID	Os11t0485200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:17108744:17114089:1 gene:Os11g0485200 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter family protein. (Os11t0485200-01)
Sequence	GCTGCGTCTCCTCGAGCAGAGCAGAGCAGCGGCGTCGCCGGCGTTGCTGCTCCCGCGCCG CCGCATCCTCGCTCGCCGGTGACGATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACC CTCTTAAACCCCCCATGTCACGCGAGCCTGCGGCGGCGGCGGAGGCGGAGGACGTCGTGG CCCGTCTCGGCACCGACGAGGCGACTGGGCTGACGGAGGAGGAGGCGGCGCGCCGCCTCA AGCTGTACGGGCCTAACCTCGTGGTCGCCCATCACCCCCAGGTGGGTGGCAAGCTTCTTG CTACACTAAAGTGCATCGTCCTGCTCTGGGGATGGGATCACTCCTTCACCGAGTACATTA AATACGAGATTGGATGGGAGTCATGGGAGCATCTTATCTTCCCCTGCTCCAGGGAGATGT TATGTGTCATGTTCATCAATTTCTCGTCATGGGCGGCATTGGCGGCTGCACTTGTGTCCC TTGCCCTTAACTCAGCTGGTCAGACAACCTATGAACTGATCGTTATCGTCTCCTTACTTG TGGGAAGCCTGTGTGCATGCTGTGTTGCCAAGCTCCTTGCCAATCGTGCTAAGGCACCGC TGGAAGCTAAAGCTTTTGCGCGAAGGACCAAGGTTCTGAGGGATGGAATATGGAAACATG AGGATGCGACCAATCTTGTCCCTGGGGATATCATATATCTCAAGTGTGGTGATATTGTGC CAGCCAATGCTTTTGTCCTCAACATGGCACAGATCGACACCAAAACCATCCGTCATGAAA GGAGTGTTAACTATGTGATGGGCTCCCTTATATACTATGGCTGGGCTGTCTCCTGTGGCG AAGGGACTGCTGTTGTTACTGTGACAGGCAATAACATCCCCATGAGCACTCTGAAACAGC TTTATCCAAAACGATTCTCTCGGCCTGGGCAGCTTAGGAAGGGTGTCATGGCTGCTGCCA CTTTTTGCTTCTGCTTAGTACTTGTTGGCATCACAAGTGAGGCTCTTGTTAAATTCTTTT TCCATCAAAGCATAGGCACGCTGCACAGTGGCCACTTTATGCCACTTATTGGTCTAATAC CAATGTCGATTCCTGCTGTGCTCTACCTGGCATTGGCATTGGACTCTCAGAGGCTTTCCA AATTGGGGGTTGCCAGCCGGGGAACTTTTGCTCTTGAAGACTTGGCTAGCATGGATGCTA TGCTCTTCAACATGACTGGCACTTTGACATGCAACAAGCCCTATTTTGACAAGGACAAGA TTGAAGTGCTTACAGAAGGTATTGATAAAGATCATGCTGTCCTGTTGGCTGCGCGGGCTT CCAAAGCACACAATGAACTGTATAAAGAACCGATTGATGCAGCCATTCTAGGCCTTATGG ATGATCCAGAACAGGCACGAGTTGGCATTAATGTTATAGAGCACCGCTCCCGTATGTTTG TTGCAATGACATTGATGTACATGACTACTTACATCGATGAAAATGGCTCCAAGTGTTCTG TGCTCAAAGGTGACCCTGCATTGATGCTTCGTGACTGCAGTTGTAGCGAAGAAGTCAGAG AGCATATACGCAAACGTATTGATAAGCTCGGTCTTGATGGATATCAATGTATTGCTGTTG GACGTATTGTTAACTCTCGGTTGGACATCATTATTCTTCTACCTTTCATAGATGATCTCA GAAGCGATAGTGCAGAAGCTGTTGATAATCTTACTGATATGGGTCTGAGTGTAATAGTAC TTACAGAAAGCCCAATGACAATTACAAAGCACGTATGTGGAAGACTTGGAAAACTGGGCT TAAATGTGTTACATGCTGACTCTATGCGGGAGTTGGTAAGCAGCAAAAATGAGCTTTTCT TGAATATCAATGGGATTTCTGATCTCTTTGTAGAATATAACCGTTATGTTATATCAAATC TGAGAACTTATTTTGGTCGTCGTAGTGCAATGGTTGGATATGAATTTTCGGATGTTGATT CTATCCGTGAAAGCGATATTGGAATCGCAGTTGCCGATGCCACTGATAGCACCAAAAGTG AATCTGATATTGTTTTGACTGAGCATGCCTTGCTGTCTGTTTCTTCTGCTGTTCAAGCCA GTAGGGAAATTTGTCAGATCATGAAAGGATGCATGGTTTATGCTGTTTCATCAACTGTCC ATGCTTTTGCTGTCCGTCTTATTTTACTCCTATGGAGACTCGAGCTACCCTGTTTCCCGA TGCTGGTGATTGCTGCTTGCAACTACTGCACATCAACTGCAATGTTATTTGAAAGGGTGA AACCATCCCAGTCACCAGATAGTTTGAAAGCAAACAAGATTATCGCAACTGGTGCTGCTT TTGGAAGCTATATTGCCCTGAGTACAGTCGTTTTTTTCATAATGACTACTAGGACTGACT TCATATCTCACATAATCAAAGCTAGATTGCTTGTTGGCCATGATGAGGAGATTAAATCTG CCTTATTCCTTCAAATGAGCATTGTTAACCATGCTATTGGACTTTTCGCACATTCACGCG ATGGCCACTGCTCTGGGCCTATTGTTACAATTTCTTCTGTTCTATCTCAACTGGTGGCAA CCGTCATTGCTGTTTATGGTGACGTGAACTCTCCTCTACCAAAGGGCATTGGCTGGGGCT GGGCAGGATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCTGTG ACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGAGGCTGTTCACTG GTTGGACCGAGTGGATGGAGAGGTGCAGGAGGCTGCTCAACAGGGGTAAAACGTGGATGG AGATGTTGACCTTAACTGCTATCTCAGGCTTGATTCTTGTCTGGTCGATATATGCATATC ATGTCATGAAGGTCCCGCAGCAGTAGGGTGGCACTTGACAGGTAGCCTTGACATTAACAT ATAGCTTTAGGTCGCAAATTAGTGACTAAGCAATGTAGCAATGTATATTATTAACCCGTG TAAAGTAAATGTCATCGACATGGTTTTGTTTCTGTCTTTTTCTTTTTTCTTTTCTTGGGT CCGGGCTTCTACTGCCGTATAATTTTGATAAGAGGGAAGTATATGGGTGGTCAACTTGTG CGGATGTGTCATTCGAATCTGAACTCTCAAAATATATTTTGGGTATCAAACTTGTTTTGG GTGTCATGTAGGCCCAAACGAGCTCTGACCTGTTTTATGCACGGATGTG