Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0484500-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:17064395:17066284:1 gene:Os11g0484500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:6-phosphogluconate dehydrogenase 2, plastidic 6PGDH description:Similar to 6-phosphogluconate dehydrogenase. (Os11t0484500-01);Similar to 6-phosphogluconate dehydrogenase, decarboxylating. (Os11t0484500-02)
Sequence

ATGGCCTCCCCGGCGCCGGCGCCGCCCGCGGCCTCCTCCTCCGCGGCGGGGTCCGCCCCG
CCGCCGCGCATCGGCCTCGCGGGGCTCGCCACCATGGGCCAGAACCTCGCCCTCAACATC
GCCGAGAAGGGCTTCCCGATCTCCGTCTACAACCGCACCGCCGCCAAGGTCGACGCCACC
GTGTCCCGCGCCGAGGCCGAGGGCGCGCTCCCGGTGCTCGGCCACCGCGACCCGCGGGGC
TTCGTCCTCTCCCTCTCCAGGCCCCGCACCGTCGTGCTGCTCGTCCAGGCCGGGCGCGCC
GTCGACGCCACCATCGACGCGCTCGTCCCCTACCTCGACGCCGGGGACGCCATCGTCGAC
GGCGGGAACGAGTGGTACCAGAACACGGAGCGGCGGATCGAGGAGGCCGCCGCGAGGGGG
ATACTCTACCTCGGGATGGGGGTCTCCGGCGGCGAGGAGGGCGCGCGGAACGGGCCCTCG
CTGATGCCGGGGGGCCACATCGACGCCTACAACAACATCAGGGACATCCTCGAGAAGGCC
GCCGCGCAGACGGAGGATGGGGCGTGCGTCACCTTCGTCGGCCCCGGCGGCGCGGGCAAC
TTCGTTAAGATGGTGCACAACGGGATCGAGTACGGCGACATGCAGCTCATCGCCGAGGCC
TACGACGTGCTCCGCCGCGTCGGCGGCCTGTCCAACTCGGAGATCGCTGACGTCTTCGCG
GAGTGGAACCGGGGGGAATTGGAGAGTTTCTTGGTTGAGATTACTGCCGATATATTCACG
GTGGCCGACCCGCTTGATGGCAGCGGCGGCGGTGGGCTGGTGGACAAGATTCTTGACAAG
ACGGGGATGAAGGGAACCGGGAAGTGGACGGTGCAGCAGGCAGCAGAGCTTGCGATTGCT
GCGCCCACGATTGCAGCATCACTGGATGGGAGGTACTTGTCTGGGTTGAAGGACGAGCGT
GTGGCGGCCGCAGGGGTTCTAGAGGCGGAGGGGATGCCATCAGGGCTACTCGAGACGATT
AATGTTGATAAGAAGATGCTAGTTGACAGGGTGAGGCAAGCTCTGTATGCGTCAAAGATT
TGCAGCTACGCGCAGGGGATGAACCTTCTGCGAGCAAAGAGTGTGGAGAAGGGGTGGAAT
CTTAACCTCGCAGAGCTTGCAAGGATTTGGAAGGGCGGGTGCATTATCCGGGCGAAGTTT
CTTGATAGGATCAAGAAGGCGTATGACAGGAACCCTGAGCTGGCCAATCTGATCGTGGAC
AGGGAGTTTGCAAGGGAGATGGTTCAGCGGCAGAATGCATGGCGGTGGGTTGTGGCTCGT
GCTGTGGAGGCTGGGATTAGCACTCCAGGGATGTCTGCTAGCCTTTCATACTTTGACACC
TACAGGTGTAGTCGGCTGCCTGCAAATCTGATCCAAGCACAGAGAGACTTGTTTGGGGCA
CACACCTATGAGCGCATTGACCGTCCAGGTTCGTTCCACACAGAGTGGACTAAGCTGGCG
AGAAAGAGTAATGGTGCGGCCATTTGA

Peptide Sequence

PEP ID

Os11t0484500-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:17064395:17066284:1 gene:Os11g0484500 transcript:Os11t0484500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:6-phosphogluconate dehydrogenase 2, plastidic 6PGDH description:Similar to 6-phosphogluconate dehydrogenase. (Os11t0484500-01);Similar to 6-phosphogluconate dehydrogenase, decarboxylating. (Os11t0484500-02)
Sequence

MASPAPAPPAASSSAAGSAPPPRIGLAGLATMGQNLALNIAEKGFPISVYNRTAAKVDAT
VSRAEAEGALPVLGHRDPRGFVLSLSRPRTVVLLVQAGRAVDATIDALVPYLDAGDAIVD
GGNEWYQNTERRIEEAAARGILYLGMGVSGGEEGARNGPSLMPGGHIDAYNNIRDILEKA
AAQTEDGACVTFVGPGGAGNFVKMVHNGIEYGDMQLIAEAYDVLRRVGGLSNSEIADVFA
EWNRGELESFLVEITADIFTVADPLDGSGGGGLVDKILDKTGMKGTGKWTVQQAAELAIA
APTIAASLDGRYLSGLKDERVAAAGVLEAEGMPSGLLETINVDKKMLVDRVRQALYASKI
CSYAQGMNLLRAKSVEKGWNLNLAELARIWKGGCIIRAKFLDRIKKAYDRNPELANLIVD
REFAREMVQRQNAWRWVVARAVEAGISTPGMSASLSYFDTYRCSRLPANLIQAQRDLFGA
HTYERIDRPGSFHTEWTKLARKSNGAAI

Transcript Sequence

Transcript ID

Os11t0484500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:17064395:17066284:1 gene:Os11g0484500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:6-phosphogluconate dehydrogenase 2, plastidic 6PGDH description:Similar to 6-phosphogluconate dehydrogenase. (Os11t0484500-01);Similar to 6-phosphogluconate dehydrogenase, decarboxylating. (Os11t0484500-02)
Sequence

ATCTCTTCACCATTCTCAACCCCCCCCCCCCCCCATCTCCACCTCCTCCTCCTCCGCCGC
CGCCGAACCCGATGGCCTCCCCGGCGCCGGCGCCGCCCGCGGCCTCCTCCTCCGCGGCGG
GGTCCGCCCCGCCGCCGCGCATCGGCCTCGCGGGGCTCGCCACCATGGGCCAGAACCTCG
CCCTCAACATCGCCGAGAAGGGCTTCCCGATCTCCGTCTACAACCGCACCGCCGCCAAGG
TCGACGCCACCGTGTCCCGCGCCGAGGCCGAGGGCGCGCTCCCGGTGCTCGGCCACCGCG
ACCCGCGGGGCTTCGTCCTCTCCCTCTCCAGGCCCCGCACCGTCGTGCTGCTCGTCCAGG
CCGGGCGCGCCGTCGACGCCACCATCGACGCGCTCGTCCCCTACCTCGACGCCGGGGACG
CCATCGTCGACGGCGGGAACGAGTGGTACCAGAACACGGAGCGGCGGATCGAGGAGGCCG
CCGCGAGGGGGATACTCTACCTCGGGATGGGGGTCTCCGGCGGCGAGGAGGGCGCGCGGA
ACGGGCCCTCGCTGATGCCGGGGGGCCACATCGACGCCTACAACAACATCAGGGACATCC
TCGAGAAGGCCGCCGCGCAGACGGAGGATGGGGCGTGCGTCACCTTCGTCGGCCCCGGCG
GCGCGGGCAACTTCGTTAAGATGGTGCACAACGGGATCGAGTACGGCGACATGCAGCTCA
TCGCCGAGGCCTACGACGTGCTCCGCCGCGTCGGCGGCCTGTCCAACTCGGAGATCGCTG
ACGTCTTCGCGGAGTGGAACCGGGGGGAATTGGAGAGTTTCTTGGTTGAGATTACTGCCG
ATATATTCACGGTGGCCGACCCGCTTGATGGCAGCGGCGGCGGTGGGCTGGTGGACAAGA
TTCTTGACAAGACGGGGATGAAGGGAACCGGGAAGTGGACGGTGCAGCAGGCAGCAGAGC
TTGCGATTGCTGCGCCCACGATTGCAGCATCACTGGATGGGAGGTACTTGTCTGGGTTGA
AGGACGAGCGTGTGGCGGCCGCAGGGGTTCTAGAGGCGGAGGGGATGCCATCAGGGCTAC
TCGAGACGATTAATGTTGATAAGAAGATGCTAGTTGACAGGGTGAGGCAAGCTCTGTATG
CGTCAAAGATTTGCAGCTACGCGCAGGGGATGAACCTTCTGCGAGCAAAGAGTGTGGAGA
AGGGGTGGAATCTTAACCTCGCAGAGCTTGCAAGGATTTGGAAGGGCGGGTGCATTATCC
GGGCGAAGTTTCTTGATAGGATCAAGAAGGCGTATGACAGGAACCCTGAGCTGGCCAATC
TGATCGTGGACAGGGAGTTTGCAAGGGAGATGGTTCAGCGGCAGAATGCATGGCGGTGGG
TTGTGGCTCGTGCTGTGGAGGCTGGGATTAGCACTCCAGGGATGTCTGCTAGCCTTTCAT
ACTTTGACACCTACAGGTGTAGTCGGCTGCCTGCAAATCTGATCCAAGCACAGAGAGACT
TGTTTGGGGCACACACCTATGAGCGCATTGACCGTCCAGGTTCGTTCCACACAGAGTGGA
CTAAGCTGGCGAGAAAGAGTAATGGTGCGGCCATTTGAGGACTTGAATGGTATCAGTAAC
TCTGTGTGGTGTCTCTTTGTGGGTTCTCTTTGAATTCACTACTGTTGTCTTTATGATTCT
AGGTCTGAATTCTGTACTTTGAATAATGAAGTGTCATGTGCGGTATGCATGGAAGGAACA
TTCATGTAGCTTGTGCTTTTATATGGTCTAGGTGCACCCATTCAGTTTTCTCATAAATTT
GGAATGCAATGGTTTTACCCTCTTATCAAATCCCTGTAATTTTGATCTGGCATGTGTCAT
TATAGCTAGTAAGACACGTGATGTTTGGCC