Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0482400-01
CDS Infomation	cds chromosome:IRGSP-1.0:11:16943497:16946613:1 gene:Os11g0482400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os11t0482400-01);Hypothetical conserved gene. (Os11t0482400-02)
Sequence	ATGGCTTCCACCCCCTCCCTCTCCGTCTCCGCCGCCGCCGCCGTCTTCCCGTCGGCCGCT GACCCCCGCAGGCCGCCGCCGCCCTCCGTCGCCATCGTCGACAAGAATAGTTCATATGGC AGGAGCTTGCAGGCGGCTGACAATGGCGGCGGCGGCGGCATGGAGGCTCCCCTTCGACCT CTGGATGTCCAGGAAGCGATGACCATGCTGACGGAGGGCAAGGCGGTGCAGTCAGCGATG TACGTGCCGCTGCTGCACCGGTGCGTCGAGACGGGGAGCCTCGGCGCCGCCAGGGCGGTG CACGGGCACATGGCGAAGACGGGCGCCAGCGCCGACATGTTCGTGGCGACGTCGCTGGTG AACGCCTACATGCGGTGCAGCGCGGCTCGGGACGCCCGCAGGCTGTTCGACGGAATGCCC GAGAGGAACGTGGTCACGTGGACGGCGCTCGTAACGGGGTACACCCTCAACTCTCAGCCG GCGCTGGGCCTGGAGGTGTTCGTCGAGATGCTGGAGATGGGGAGGTACCCGTCGCATTAC ACGCTCGGCGCGACGCTGAACGCGTGCCTGGCATCGTGCGATGTCGATTTGGGGAAGCAG GTTCATGGGTATGCGATTAAGTACGGGGCCGAGTCGATCACGAGCATGGGGAACTCGCTT TGCAGTCTGTATGCCAAGTTGGGGAGCTTGGATTCTGCGTTGAGGGCGTTCTGGAGGATC CCTGAGAAGAATGTGATCACGTGGACGACGATGATATCTGCGTGTGCCGAGGATGAGGAA TGCGTGGAGCTTGGAATGAGCTTGTTTATCGATATGCTTATGGATGGGGTGATGCCGAAT GAGTTCACATTGACAAGTGTCATGAGCTTGTGTGGTACAAGGCTGGATCTTAACCTGGGA AAGCAAGTTCAGGCCTTCTCCTTCAAAATTGGTTGTGAAACAAATCTTCCAGTGAAGAAC TCGACAATGTACCTCTATCTGAGAAAGGGTGAAACTGATGAGGCGATGCGGTTGTTCGAA CAGATGGAGGATGCCAGCATCATCACATGGAATGCAATGATCTCAGGCTATGCCCAGATC ATGGACTCAGCAAAGGATGATCTCCAGGCTCGATCAAGAGGGTTCCAGGCGCTCACAATT TTCCGCGACCTCAAGAGGTCTGTGATGAAGCCGGATCTTTTCACTTTCTCAAGCATCCTA TCTGTTTGCAGTGCCATGATGGCTTTGGAGCAGGGTGAGCAAATCCATGCGCAGACGATA AAGAGTGGCTTCTTGTCAGATGTTGTGGTGAACAGCGCACTGGTGAATATGTACAATAAA TGTGGGTGTATTCAAGATGCAAACAAAGCCTTTCTTGAGATGCCAACACGAACTTTTGTC ACATGGACTTCTATGATCTCAGGCTACTCGCAGCATGGCCAACCTCAGGAGGCGATACAA CTCTTCGAGGAAATGAGATTAGCTGGGGTGAGGCCAAATGAAATCACATTTGTAAGTTTG CTCTCAGCTTGCAGCTATGCGGGTTTGGTTGAGGAAGCTGAGCATTACTTCGACATGATG AAGAAAGAGTATTGTATTGAACCTGTTGTGGATCACTATGGGTGCATGATCGACATGTTT GTGCGGTTGGGGCGGGTAGAGGATGCATTTTCCTTTATCAAAAGGACAGGTTTTGAGCCG AATGAGGCCATCTGGTCAAGTTTGGTTGCTGGATGCCGGAGCCATGGAAACATGGAACTT GCCTTCTACGCTGCCGATAAGCTGCTTGAGCTCAAGCCAAAAGGGATTGAAACCTATATC CTGCTGTTGAACATGTACATTTCCACAGAGAGATGGCAGGATGTGGCGAGAGTACGAAAG CTGATGAAACAGGAAGATGTTGGGATTCTTAGGGACCGCAGCTGGATTACGATAAAAGAC AAGGTGTATTTCTTCAGAGCTAATGATAGAACTCATCCTCAAGCAACTGAGTTGTATCAA CTATTGGAGAATCTGTTGGAGAAAGCTAAAGCCATTGGGTATGAACCATATCAGAATGCA GAGTTATCTGATAGCGAGGATGATGAGAAACCTGCCGCTGGATCACTAAAGCACCACAGT GAGAGGTTAGCTGTCGCGCTAGGGCTGCTGCAAACACCTCCAGGTGCCACGGTTCGCGTC ACGAAGAACATCACCATGTGCAGGGACTGCCACAGCTCCATTAAGCTATTTTCGCTACTT GAAAACAGAGAAATCATTGTCCGGGACAGCAAACGGCTTCACAAGTTCAAGGATGGCCGG TGCTCCTGTGGAGATTTTGGTGCTCTATTGTGA

Peptide Sequence

PEP ID	Os11t0482400-01
PEP Infomation	pep chromosome:IRGSP-1.0:11:16943497:16946613:1 gene:Os11g0482400 transcript:Os11t0482400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os11t0482400-01);Hypothetical conserved gene. (Os11t0482400-02)
Sequence	MASTPSLSVSAAAAVFPSAADPRRPPPPSVAIVDKNSSYGRSLQAADNGGGGGMEAPLRP LDVQEAMTMLTEGKAVQSAMYVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLV NAYMRCSAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHY TLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRI PEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLG KQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQI MDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTI KSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQ LFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMF VRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYI LLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQ LLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGATVRV TKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRCSCGDFGALL

Transcript Sequence

Transcript ID	Os11t0482400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:16943497:16946613:1 gene:Os11g0482400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os11t0482400-01);Hypothetical conserved gene. (Os11t0482400-02)
Sequence	CTTGGCTTCCTCCGCCGATGCTTCCCTCCTCCTCCTCCACTCCCCTCTGACCGATGGCTT CCACCCCCTCCCTCTCCGTCTCCGCCGCCGCCGCCGTCTTCCCGTCGGCCGCTGACCCCC GCAGGCCGCCGCCGCCCTCCGTCGCCATCGTCGACAAGAATAGTTCATATGGCAGGAGCT TGCAGGCGGCTGACAATGGCGGCGGCGGCGGCATGGAGGCTCCCCTTCGACCTCTGGATG TCCAGGAAGCGATGACCATGCTGACGGAGGGCAAGGCGGTGCAGTCAGCGATGTACGTGC CGCTGCTGCACCGGTGCGTCGAGACGGGGAGCCTCGGCGCCGCCAGGGCGGTGCACGGGC ACATGGCGAAGACGGGCGCCAGCGCCGACATGTTCGTGGCGACGTCGCTGGTGAACGCCT ACATGCGGTGCAGCGCGGCTCGGGACGCCCGCAGGCTGTTCGACGGAATGCCCGAGAGGA ACGTGGTCACGTGGACGGCGCTCGTAACGGGGTACACCCTCAACTCTCAGCCGGCGCTGG GCCTGGAGGTGTTCGTCGAGATGCTGGAGATGGGGAGGTACCCGTCGCATTACACGCTCG GCGCGACGCTGAACGCGTGCCTGGCATCGTGCGATGTCGATTTGGGGAAGCAGGTTCATG GGTATGCGATTAAGTACGGGGCCGAGTCGATCACGAGCATGGGGAACTCGCTTTGCAGTC TGTATGCCAAGTTGGGGAGCTTGGATTCTGCGTTGAGGGCGTTCTGGAGGATCCCTGAGA AGAATGTGATCACGTGGACGACGATGATATCTGCGTGTGCCGAGGATGAGGAATGCGTGG AGCTTGGAATGAGCTTGTTTATCGATATGCTTATGGATGGGGTGATGCCGAATGAGTTCA CATTGACAAGTGTCATGAGCTTGTGTGGTACAAGGCTGGATCTTAACCTGGGAAAGCAAG TTCAGGCCTTCTCCTTCAAAATTGGTTGTGAAACAAATCTTCCAGTGAAGAACTCGACAA TGTACCTCTATCTGAGAAAGGGTGAAACTGATGAGGCGATGCGGTTGTTCGAACAGATGG AGGATGCCAGCATCATCACATGGAATGCAATGATCTCAGGCTATGCCCAGATCATGGACT CAGCAAAGGATGATCTCCAGGCTCGATCAAGAGGGTTCCAGGCGCTCACAATTTTCCGCG ACCTCAAGAGGTCTGTGATGAAGCCGGATCTTTTCACTTTCTCAAGCATCCTATCTGTTT GCAGTGCCATGATGGCTTTGGAGCAGGGTGAGCAAATCCATGCGCAGACGATAAAGAGTG GCTTCTTGTCAGATGTTGTGGTGAACAGCGCACTGGTGAATATGTACAATAAATGTGGGT GTATTCAAGATGCAAACAAAGCCTTTCTTGAGATGCCAACACGAACTTTTGTCACATGGA CTTCTATGATCTCAGGCTACTCGCAGCATGGCCAACCTCAGGAGGCGATACAACTCTTCG AGGAAATGAGATTAGCTGGGGTGAGGCCAAATGAAATCACATTTGTAAGTTTGCTCTCAG CTTGCAGCTATGCGGGTTTGGTTGAGGAAGCTGAGCATTACTTCGACATGATGAAGAAAG AGTATTGTATTGAACCTGTTGTGGATCACTATGGGTGCATGATCGACATGTTTGTGCGGT TGGGGCGGGTAGAGGATGCATTTTCCTTTATCAAAAGGACAGGTTTTGAGCCGAATGAGG CCATCTGGTCAAGTTTGGTTGCTGGATGCCGGAGCCATGGAAACATGGAACTTGCCTTCT ACGCTGCCGATAAGCTGCTTGAGCTCAAGCCAAAAGGGATTGAAACCTATATCCTGCTGT TGAACATGTACATTTCCACAGAGAGATGGCAGGATGTGGCGAGAGTACGAAAGCTGATGA AACAGGAAGATGTTGGGATTCTTAGGGACCGCAGCTGGATTACGATAAAAGACAAGGTGT ATTTCTTCAGAGCTAATGATAGAACTCATCCTCAAGCAACTGAGTTGTATCAACTATTGG AGAATCTGTTGGAGAAAGCTAAAGCCATTGGGTATGAACCATATCAGAATGCAGAGTTAT CTGATAGCGAGGATGATGAGAAACCTGCCGCTGGATCACTAAAGCACCACAGTGAGAGGT TAGCTGTCGCGCTAGGGCTGCTGCAAACACCTCCAGGTGCCACGGTTCGCGTCACGAAGA ACATCACCATGTGCAGGGACTGCCACAGCTCCATTAAGCTATTTTCGCTACTTGAAAACA GAGAAATCATTGTCCGGGACAGCAAACGGCTTCACAAGTTCAAGGATGGCCGGTGCTCCT GTGGAGATTTTGGTGCTCTATTGTGAGAAGGATGGAAATCTTACCCCCCACATGCTACTC TAGGAACTCAACAGTTTTGTAGTGGAAGCAGGGTTACAAGTTACAGGTTGCACAGAATTC TTTTGATGAACTGATCACCCTTTGTGATTTTTGTAGATCTTTGTATGAAATCGAAATTTA TAAACTCAGGCAGTGTCCCCAAATGATCTGTACACAAGGTTAGCATTATAGGACAGTGAA TACTTGTGAATCTGCTGTAAATGCTAAAATGCTAGCTTCTTAGGATCAGATCTAAGATTT TATTGTTTAAACTCACAATGCAATATGGCAGTAACCCCCATTCTTTGATCTT