Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0482200-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:16937493:16938495:-1 gene:Os11g0482200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pathogenic type III effector avirulence factor Avr cleavage site domain containing protein. (Os11t0482200-01)
Sequence

GGCAAAGGAGGAGGGCACATCCCAAGGTTTGGAGATTGGAAGAGCAGTGATGGTGGCACC
CCTTACACCGTCTTCTTTGACGATGCCCGCAAGAGGAAGAATGCAGGCCATAGAACACCT
CCTCACGGAGCTGGTTCTTCCACTCCCCAAAGAAACAAGGATCCCGCATCTCGTCCTCGC
AGCCAAAGCGCGGTCGGGCATGGTGGTGGGTCTGTGCCTGCTTGGGGCCAATGGAATGAG
GGCAATGCTGGTGGTGGTGGGGCCCAGCAGTACACGCTTATGTTCGACCAGATTAGGGAT
GAGAGGAGAGGCAGTGCTCCTTCAACGCCTACCGTCGAGCAACTCCAGCGTGCCACTCCA
ACTCGGTACAATCAGCACAATCAGCATGCAAATATGCGCAAGAGATTCACATGTTTCGGA
CTGTGCTTGAAGTAG

Peptide Sequence

PEP ID

Os11t0482200-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:16937493:16938495:-1 gene:Os11g0482200 transcript:Os11t0482200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pathogenic type III effector avirulence factor Avr cleavage site domain containing protein. (Os11t0482200-01)
Sequence

GKGGGHIPRFGDWKSSDGGTPYTVFFDDARKRKNAGHRTPPHGAGSSTPQRNKDPASRPR
SQSAVGHGGGSVPAWGQWNEGNAGGGGAQQYTLMFDQIRDERRGSAPSTPTVEQLQRATP
TRYNQHNQHANMRKRFTCFGLCLK

Transcript Sequence

Transcript ID

Os11t0482200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:16937493:16938495:-1 gene:Os11g0482200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pathogenic type III effector avirulence factor Avr cleavage site domain containing protein. (Os11t0482200-01)
Sequence

GGGCAAAGGAGGAGGGCACATCCCAAGGTTTGGAGATTGGAAGAGCAGTGATGGTGGCAC
CCCTTACACCGTCTTCTTTGACGATGCCCGCAAGAGGAAGAATGCAGGCCATAGAACACC
TCCTCACGGAGCTGGTTCTTCCACTCCCCAAAGAAACAAGGATCCCGCATCTCGTCCTCG
CAGCCAAAGCGCGGTCGGGCATGGTGGTGGGTCTGTGCCTGCTTGGGGCCAATGGAATGA
GGGCAATGCTGGTGGTGGTGGGGCCCAGCAGTACACGCTTATGTTCGACCAGATTAGGGA
TGAGAGGAGAGGCAGTGCTCCTTCAACGCCTACCGTCGAGCAACTCCAGCGTGCCACTCC
AACTCGGTACAATCAGCACAATCAGCATGCAAATATGCGCAAGAGATTCACATGTTTCGG
ACTGTGCTTGAAGTAGAGGAATCATCATGGATGGATCAAGGAAATTGTGTATTAATGTCA
ATGGATACTGCTTTTGTTGTGCATGTATGGAGTTATTGCTATGAGTTTTCCATCAATAGT
CAAGATTGTACGTATAAAGGATTTTGATCACGTAAAATGATGATGAAGATACC