Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0475600-01
CDS Infomation	cds chromosome:IRGSP-1.0:11:16510126:16512578:1 gene:Os11g0475600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HYBRID WEAKNESS H2 description:Hexose transporter, Hybrid breakdown (HB) (Os11t0475600-01)
Sequence	ATGAGAGGCGCCGTGTTGGTGGCCGTGGCGGCCGCCATCGGCAACTACCTGCAGGGATGG GACAACGCCACCATCGCCGGCGCCGTGCTGTACATCAAGCGGGAGTTCGCCCTCGAGACC CAGCCCGCCGTGGAGGGCCTCGTCGTCGCCATGTCCCTCATCGGCGCCACCATCATCACC ACCTTCTCCGGCCCCGTCTCCGACCTCGTCGGCCGCCGCCCCATGCTCATCGCCTCCTCC CTCCTCTACTTCGCCGGCGGCCTCATCATGCTCTGGTCCCCCAACGTCTACGTCCTCCTC CTCGCCCGCCTCGTCGACGGCTTCGGCGTCGGCCTCGCCGTCACCCTCGTCCCCGTCTAC ATCTCCGAGACCTCCCCGCCGGAGATCCGCGGCCGCCTCAACACGCTGCCGCAGTTCACC GGCTCCGGCGGCATGTTCATGTCCTACTGCATGATCTTCGCCATGACGCTCTCGCCCTCG CCCAACTGGCGCATCATGCTCGGCGTCCTCTTCGTCCCCTCGCTGCTCTACCTGTTCGTC ACCGTCTTCTACCTCCCGGAGTCGCCGCGGTGGCTCGTCAGCAAGGGGCGCATGAAGGAG GCCAGGGTTGTGCTCGAGATGCTGCGCGGCCGCGAGGACGTCTCCGGCGAGATGGCGCTG CTCGTCGAGGGCCTCGGCACCGGCGGCGACACCGAGATCGAGGACTACGTCGTCGGCCCG TCCGAGGGCGACGCCGGCGAGAACGAGCAGGCGAGGGACACCGTCACGCTGTACGGGCCG GAGCAGGGGCTTTCGTGGGTGGCGCAGCCGGTCGCCGGCGGCCGCGGCAGCATGCTGGGG AGCTCGCTGGGGCTGCAGGCGTCGCGCCATGGCAGCATGTACGAGCAGATGAAGGACCCC GTGGTGGCGCTTCTCGGGAGCGTCCACGAGCGGCTGCCGGAGTCCGGCGGCGGCGCCACC GGCAGCATGAGGGGGAGCACGCTGTTCCCCAACCTCGGGAGCATGCTTAGCGTCAACGAT AGGCCCGGCGGCAGCAGCTGGGACGAGGAGAACGTGCAGCCTGGCGACGACGACCTCGAC GAGGAGGAGGAGGAGTACCTCTCCGACGACGGCAAGGACGACGACGACGGCGGCGGCCTG CAGGCACCGCTGCTGTCGCGGCAGAGCACCGACGTGGAGACCAAGAACGAGCCCGCCTCC GGCCAGGTGGCGATGCAGCGGCACAGCAGCATCGGCGGCGGCGGCGGCGTCGAGACGGCG AGCACCATGGGCATCGGCGGCGGGTGGCAGCTGGCGTGGAAGTGGACGGAGAACGTGGGC CCCGACGGCGTCAAGCGCGGCGCGGTGAAGCGCATGTACCTGCACGAGGAGTCCGAGGCC GCGCCCGGCGGTGACTCGGGCGCCGCCGGCGACGCGCAGTCCACGGCGTACGTCCACGCG GCGGCGCTGGTGAGCCGGTCGATGCTGTACACCAAGGACGTCCTGATCGGGCAGAGCCCC ACCGAGCCGGCGTTCGCGAACCCGCCGGAGGCGGTGGCGGCGGCGGCGTCGACGGGCCCG GCGTGGCGCGAGCTGCTCGAGCCGGGCGTCCGCCACGCCCTCTTCTGCGGCGTCACCATC CAGATCCTCCAGCAATTCTCCGGCATCAACGGCGTGCTCTACTACACCCCGCAGATCCTC GACCAGGCCGGCGTCAGCGTCCTCCTCGCCAGCCTCGGCCTCTCCGGCGACTCCACCTCC ATCCTCATCAGCGGCCTCACCACGCTCCTCATGCTCCCGTCCATCGGCGTCGCCATGCGC CTCATGGACGCCTCGGGCCGCCGCGCCCTCCTCCTCTGGACGCTGCCCGTCCTCGTCGCG TCCCTCGCCGTGCTCGTGGTGGCGAACGTCGTGCCCATGGCGGCGACCGCGCACGCGGCG CTGTCGACGGGGAGCGTCATCGTCTACTTCTGCTGCTTCGTCATGGGGTTCGGCCCCATC CCCAACATCCTCTGCGCCGAGATCTTCCCGACGAGGGTGAGGGGACTCTGCATTGCCATC TGCTCGCTGACGTTCTGGCTCGGCGACATCGCCGTCACGTACAGCCTCCCCGTCATGCTC AGCTCCGTGGGGCTCGCCGGCGTGTTCTCCTTCTACGCCGCCGTGTGCTGCGTCGCGCTC GTGTTCGTGGCGCTCAAGGTGCCCGAGACCAAGGGCCTCCCGCTCGAGGTCATCATCGAG TTCTTCAACGTCGGCGCCAAGGCCGGCACGTTGCCTGACGAAGAGTTCCACTGA

Peptide Sequence

PEP ID	Os11t0475600-01
PEP Infomation	pep chromosome:IRGSP-1.0:11:16510126:16512578:1 gene:Os11g0475600 transcript:Os11t0475600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HYBRID WEAKNESS H2 description:Hexose transporter, Hybrid breakdown (HB) (Os11t0475600-01)
Sequence	MRGAVLVAVAAAIGNYLQGWDNATIAGAVLYIKREFALETQPAVEGLVVAMSLIGATIIT TFSGPVSDLVGRRPMLIASSLLYFAGGLIMLWSPNVYVLLLARLVDGFGVGLAVTLVPVY ISETSPPEIRGRLNTLPQFTGSGGMFMSYCMIFAMTLSPSPNWRIMLGVLFVPSLLYLFV TVFYLPESPRWLVSKGRMKEARVVLEMLRGREDVSGEMALLVEGLGTGGDTEIEDYVVGP SEGDAGENEQARDTVTLYGPEQGLSWVAQPVAGGRGSMLGSSLGLQASRHGSMYEQMKDP VVALLGSVHERLPESGGGATGSMRGSTLFPNLGSMLSVNDRPGGSSWDEENVQPGDDDLD EEEEEYLSDDGKDDDDGGGLQAPLLSRQSTDVETKNEPASGQVAMQRHSSIGGGGGVETA STMGIGGGWQLAWKWTENVGPDGVKRGAVKRMYLHEESEAAPGGDSGAAGDAQSTAYVHA AALVSRSMLYTKDVLIGQSPTEPAFANPPEAVAAAASTGPAWRELLEPGVRHALFCGVTI QILQQFSGINGVLYYTPQILDQAGVSVLLASLGLSGDSTSILISGLTTLLMLPSIGVAMR LMDASGRRALLLWTLPVLVASLAVLVVANVVPMAATAHAALSTGSVIVYFCCFVMGFGPI PNILCAEIFPTRVRGLCIAICSLTFWLGDIAVTYSLPVMLSSVGLAGVFSFYAAVCCVAL VFVALKVPETKGLPLEVIIEFFNVGAKAGTLPDEEFH

Transcript Sequence

Transcript ID	Os11t0475600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:16510126:16512578:1 gene:Os11g0475600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HYBRID WEAKNESS H2 description:Hexose transporter, Hybrid breakdown (HB) (Os11t0475600-01)
Sequence	ATGTGGTTTCTCTGAGAAACCGATCCGAGATCGATCGATCGCCACGTACGATGAGAGGCG CCGTGTTGGTGGCCGTGGCGGCCGCCATCGGCAACTACCTGCAGGGATGGGACAACGCCA CCATCGCCGGCGCCGTGCTGTACATCAAGCGGGAGTTCGCCCTCGAGACCCAGCCCGCCG TGGAGGGCCTCGTCGTCGCCATGTCCCTCATCGGCGCCACCATCATCACCACCTTCTCCG GCCCCGTCTCCGACCTCGTCGGCCGCCGCCCCATGCTCATCGCCTCCTCCCTCCTCTACT TCGCCGGCGGCCTCATCATGCTCTGGTCCCCCAACGTCTACGTCCTCCTCCTCGCCCGCC TCGTCGACGGCTTCGGCGTCGGCCTCGCCGTCACCCTCGTCCCCGTCTACATCTCCGAGA CCTCCCCGCCGGAGATCCGCGGCCGCCTCAACACGCTGCCGCAGTTCACCGGCTCCGGCG GCATGTTCATGTCCTACTGCATGATCTTCGCCATGACGCTCTCGCCCTCGCCCAACTGGC GCATCATGCTCGGCGTCCTCTTCGTCCCCTCGCTGCTCTACCTGTTCGTCACCGTCTTCT ACCTCCCGGAGTCGCCGCGGTGGCTCGTCAGCAAGGGGCGCATGAAGGAGGCCAGGGTTG TGCTCGAGATGCTGCGCGGCCGCGAGGACGTCTCCGGCGAGATGGCGCTGCTCGTCGAGG GCCTCGGCACCGGCGGCGACACCGAGATCGAGGACTACGTCGTCGGCCCGTCCGAGGGCG ACGCCGGCGAGAACGAGCAGGCGAGGGACACCGTCACGCTGTACGGGCCGGAGCAGGGGC TTTCGTGGGTGGCGCAGCCGGTCGCCGGCGGCCGCGGCAGCATGCTGGGGAGCTCGCTGG GGCTGCAGGCGTCGCGCCATGGCAGCATGTACGAGCAGATGAAGGACCCCGTGGTGGCGC TTCTCGGGAGCGTCCACGAGCGGCTGCCGGAGTCCGGCGGCGGCGCCACCGGCAGCATGA GGGGGAGCACGCTGTTCCCCAACCTCGGGAGCATGCTTAGCGTCAACGATAGGCCCGGCG GCAGCAGCTGGGACGAGGAGAACGTGCAGCCTGGCGACGACGACCTCGACGAGGAGGAGG AGGAGTACCTCTCCGACGACGGCAAGGACGACGACGACGGCGGCGGCCTGCAGGCACCGC TGCTGTCGCGGCAGAGCACCGACGTGGAGACCAAGAACGAGCCCGCCTCCGGCCAGGTGG CGATGCAGCGGCACAGCAGCATCGGCGGCGGCGGCGGCGTCGAGACGGCGAGCACCATGG GCATCGGCGGCGGGTGGCAGCTGGCGTGGAAGTGGACGGAGAACGTGGGCCCCGACGGCG TCAAGCGCGGCGCGGTGAAGCGCATGTACCTGCACGAGGAGTCCGAGGCCGCGCCCGGCG GTGACTCGGGCGCCGCCGGCGACGCGCAGTCCACGGCGTACGTCCACGCGGCGGCGCTGG TGAGCCGGTCGATGCTGTACACCAAGGACGTCCTGATCGGGCAGAGCCCCACCGAGCCGG CGTTCGCGAACCCGCCGGAGGCGGTGGCGGCGGCGGCGTCGACGGGCCCGGCGTGGCGCG AGCTGCTCGAGCCGGGCGTCCGCCACGCCCTCTTCTGCGGCGTCACCATCCAGATCCTCC AGCAATTCTCCGGCATCAACGGCGTGCTCTACTACACCCCGCAGATCCTCGACCAGGCCG GCGTCAGCGTCCTCCTCGCCAGCCTCGGCCTCTCCGGCGACTCCACCTCCATCCTCATCA GCGGCCTCACCACGCTCCTCATGCTCCCGTCCATCGGCGTCGCCATGCGCCTCATGGACG CCTCGGGCCGCCGCGCCCTCCTCCTCTGGACGCTGCCCGTCCTCGTCGCGTCCCTCGCCG TGCTCGTGGTGGCGAACGTCGTGCCCATGGCGGCGACCGCGCACGCGGCGCTGTCGACGG GGAGCGTCATCGTCTACTTCTGCTGCTTCGTCATGGGGTTCGGCCCCATCCCCAACATCC TCTGCGCCGAGATCTTCCCGACGAGGGTGAGGGGACTCTGCATTGCCATCTGCTCGCTGA CGTTCTGGCTCGGCGACATCGCCGTCACGTACAGCCTCCCCGTCATGCTCAGCTCCGTGG GGCTCGCCGGCGTGTTCTCCTTCTACGCCGCCGTGTGCTGCGTCGCGCTCGTGTTCGTGG CGCTCAAGGTGCCCGAGACCAAGGGCCTCCCGCTCGAGGTCATCATCGAGTTCTTCAACG TCGGCGCCAAGGCCGGCACGTTGCCTGACGAAGAGTTCCACTGAAACAAAACTTGGTTAA TTAACCTGAAACTTAATTTGTAATCAGCAAACACAAGTTTTTTCCAAAATATTGGTTTTG TGGCTGAATTATTATTCTTTAAATTTCCTCCTTAATTACTGAATATTTAATCT