Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0455800-02
CDS Infomation

cds chromosome:IRGSP-1.0:11:15437370:15439932:1 gene:Os11g0455800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:serine hydroxymethyltransferase 2 description:Similar to Serine hydroxymethyltransferase. (Os11t0455800-01);Similar to Serine hydroxymethyltransferase. (Os11t0455800-02)
Sequence

ATCTGCGGCGGCAGCGCGTACCCGAGGGACTGGGACTACGCCAAGCTCAGGGCCGTCGCC
GACAAGGTCGGGGCGCTGCTCCTCTGCGACATGGCGCACATCAGCGGCCTCGTCGCCGCG
CAGGAAGCTGCAAATCCTTTTGAGTACTGTGATGTGGTTACCACCACCACGCACAAGTCC
CTCCGAGGACCAAGAGCTGGCATGATCTTCTACAGGAAGGGCCCTAAGCCTCCCAAGAAG
GGCCAGCCTGAGGGTGCTGTCTATGACTACGAGGACAAGATCAACTTCGCAGTGTTCCCG
TCACTGCAAGGTGGTCCTCACAACCACCAGATTGCAGCCCTTGCTGTTGCTCTGCAGCAA
ACCATGACACCTGGATTCAAGGCCTACGCAAAGCAGGTCAAGGCCAACGCTGTCGCCATT
GGCAAGTATCTTATGAGCAAGGGCTACAAAATGGTGACTGATGGAACTGAGAACCACCTT
GTTCTCTGGGATCTTCGCCCTCTTGGCTTGACTGGCAACAAGGTTGAGAAGATGTGTGAC
CTTTGCAGCATTACACTTAACAAGAATGCTGTCTTTGGTGACAGCAGTGCATTGGCTCCT
GGCGGTGTCCGCATTGGTACTCCTGCGATGACATCCAGGGGTCTTGTCGAGAAGGACTTT
GAGCAGATCGGCGAGTTCCTCCACCAGGCCGTGACCATCTGCCTCAACATCCAGAAGGAG
CACGGCAAGCTCCTCAAGGACTTCTCCAAGGGCCTGGTGAACAACAAGGACATCGAGAAC
CTCAAGCTGGAGGTCGAGAAGTTCGCCACCTCCTTCGACATGCCCGGCTTCACCCTCGAC
AGCATGAAGTACAAGGAGTAG

Peptide Sequence

PEP ID

Os11t0455800-02
PEP Infomation

pep chromosome:IRGSP-1.0:11:15437370:15439932:1 gene:Os11g0455800 transcript:Os11t0455800-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:serine hydroxymethyltransferase 2 description:Similar to Serine hydroxymethyltransferase. (Os11t0455800-01);Similar to Serine hydroxymethyltransferase. (Os11t0455800-02)
Sequence

ICGGSAYPRDWDYAKLRAVADKVGALLLCDMAHISGLVAAQEAANPFEYCDVVTTTTHKS
LRGPRAGMIFYRKGPKPPKKGQPEGAVYDYEDKINFAVFPSLQGGPHNHQIAALAVALQQ
TMTPGFKAYAKQVKANAVAIGKYLMSKGYKMVTDGTENHLVLWDLRPLGLTGNKVEKMCD
LCSITLNKNAVFGDSSALAPGGVRIGTPAMTSRGLVEKDFEQIGEFLHQAVTICLNIQKE
HGKLLKDFSKGLVNNKDIENLKLEVEKFATSFDMPGFTLDSMKYKE

Transcript Sequence

Transcript ID

Os11t0455800-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:15437370:15439932:1 gene:Os11g0455800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:serine hydroxymethyltransferase 2 description:Similar to Serine hydroxymethyltransferase. (Os11t0455800-01);Similar to Serine hydroxymethyltransferase. (Os11t0455800-02)
Sequence

CATCTGCGGCGGCAGCGCGTACCCGAGGGACTGGGACTACGCCAAGCTCAGGGCCGTCGC
CGACAAGGTCGGGGCGCTGCTCCTCTGCGACATGGCGCACATCAGCGGCCTCGTCGCCGC
GCAGGAAGCTGCAAATCCTTTTGAGTACTGTGATGTGGTTACCACCACCACGCACAAGTC
CCTCCGAGGACCAAGAGCTGGCATGATCTTCTACAGGAAGGGCCCTAAGCCTCCCAAGAA
GGGCCAGCCTGAGGGTGCTGTCTATGACTACGAGGACAAGATCAACTTCGCAGTGTTCCC
GTCACTGCAAGGTGGTCCTCACAACCACCAGATTGCAGCCCTTGCTGTTGCTCTGCAGCA
AACCATGACACCTGGATTCAAGGCCTACGCAAAGCAGGTCAAGGCCAACGCTGTCGCCAT
TGGCAAGTATCTTATGAGCAAGGGCTACAAAATGGTGACTGATGGAACTGAGAACCACCT
TGTTCTCTGGGATCTTCGCCCTCTTGGCTTGACTGGCAACAAGGTTGAGAAGATGTGTGA
CCTTTGCAGCATTACACTTAACAAGAATGCTGTCTTTGGTGACAGCAGTGCATTGGCTCC
TGGCGGTGTCCGCATTGGTACTCCTGCGATGACATCCAGGGGTCTTGTCGAGAAGGACTT
TGAGCAGATCGGCGAGTTCCTCCACCAGGCCGTGACCATCTGCCTCAACATCCAGAAGGA
GCACGGCAAGCTCCTCAAGGACTTCTCCAAGGGCCTGGTGAACAACAAGGACATCGAGAA
CCTCAAGCTGGAGGTCGAGAAGTTCGCCACCTCCTTCGACATGCCCGGCTTCACCCTCGA
CAGCATGAAGTACAAGGAGTAGGAAAACAAAAACACACACAAACCATGGTCCTACCGCCG
CTAATCGTCGACCAGCTGTGCTCTCGTGGACCGCCGTCGTCGTCATCTTCTTCCTCGGCA
CAAGCTGGCCCTGTGTTACGGATTTTGTCTGCCCATCGAGATGATAGGTTTCATAAAACG
CTCTCTCCCCCACCCTGCTGCTGCCTCTGGTTTGGTTGCCAACCTCATCCCCCATCGGTT
TTTTTCCTCCTCTTGTTTCTAATTTCTAGGAGCTGTGCCTTTTGGAATCATGGAATGTCA
AGTATTTGCCAAT