Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0448400-01
CDS Infomation	cds chromosome:IRGSP-1.0:11:14975236:14979808:1 gene:Os11g0448400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SIGMA FACTOR 2A description:RNA polymerase sigma factor, region 2 domain containing protein. (Os11t0448400-01);Similar to Sigma-70 region 3 family protein, expressed. (Os11t0448400-02)
Sequence	ATGGCGTGCCTCGCGCCGCACTTCAAGTGGGCGCCCTGCCCCCACGCGCACCACCACCAC TCTACTTCTTCTTTACCGTCGTCGTCGTCTTCGTCCACCTCGGCCCCTTCCTCGTCGTCG AGGTGCTCCTTCTCCCGCGGGGGCCCCTTCCGCGTCCACTGCGCGGTCACCGCCACCACC TCCGCCGCGGCGCCCGTCGTCGTAGAAGCTCCCGGCGGGGGGATGCGGCTCGCGTACGCC GCCGCCCCGGACTCCTCCGCGCCGGCTCTCCAGAAAAAAATTCAATCGGCCCTGGCATCA GAAGTATTTCTAAATGAAGAGGCTGTTGTAACAGCTGCTGCAGCAGAGGCAGTTGCCCTT GCTAGAGCAGCTGCTGAAGCTGCACAGGAAGTTGTTCGTATGGTACAAAATAATAAAAAT GAACGTAACACCAGACCAAAAAAAGCTGTGGTCAACTACTTGGCAAATGAAATACTTCGC ACGGAAATGAAACCAAACATTCTTGATAAATATAGTGATGGCATTTTGTCAGAGGAGATA GAGTCTTATGGCATCTTGAGTGATGAAGCTGAACTAGACGGTGATACACAGGACATCCCT AGTATAGCTGTGAAGTCTGCTCGTCAAACTGAGAGAAGAGCTCGGAGAACGAGGGCAGCA ATAAAGGCTGCTACCATAGTCCGTACTTCCCCAAAACCTGCAACGTCCTCAAAGAAGAAG CGGTCAAAGGGCGCCTCTTCTGGCACAAATCCATTAGGTTCCTTGTGGAAGATGACGGGT CGCAGACTTCTTACAGCAAAGGAAGAGGTTGAGTTCTCGGAAGGTATTCAGGACCTCTTA AAGCTAGAAGCAATCCAAGCTGAGCTTGCAGAGTACAATGGTGGCCAGCCAACCTTCGCT CAGTGGGCTACAGCAGCTGGAGTTGATGAGAGAACTTTGCGGAAGCGTTTAGATCATGGT ATTTATTGCAAGAATAGAATGGTTACATCCAATGTGCGACTTGTAATATCTATTGCCAGA GAGTTTGAAGGTCCAGGAATGGAACTTTATGATCTTATCCAGGTCTTCATTACAGGAAGG GATGCAGGGCCTTATAAGGGGTGCTGA

Peptide Sequence

PEP ID	Os11t0448400-01
PEP Infomation	pep chromosome:IRGSP-1.0:11:14975236:14979808:1 gene:Os11g0448400 transcript:Os11t0448400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SIGMA FACTOR 2A description:RNA polymerase sigma factor, region 2 domain containing protein. (Os11t0448400-01);Similar to Sigma-70 region 3 family protein, expressed. (Os11t0448400-02)
Sequence	MACLAPHFKWAPCPHAHHHHSTSSLPSSSSSSTSAPSSSSRCSFSRGGPFRVHCAVTATT SAAAPVVVEAPGGGMRLAYAAAPDSSAPALQKKIQSALASEVFLNEEAVVTAAAAEAVAL ARAAAEAAQEVVRMVQNNKNERNTRPKKAVVNYLANEILRTEMKPNILDKYSDGILSEEI ESYGILSDEAELDGDTQDIPSIAVKSARQTERRARRTRAAIKAATIVRTSPKPATSSKKK RSKGASSGTNPLGSLWKMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFA QWATAAGVDERTLRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQVFITGR DAGPYKGC

Transcript Sequence

Transcript ID	Os11t0448400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:14975236:14979808:1 gene:Os11g0448400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SIGMA FACTOR 2A description:RNA polymerase sigma factor, region 2 domain containing protein. (Os11t0448400-01);Similar to Sigma-70 region 3 family protein, expressed. (Os11t0448400-02)
Sequence	AAACGCCATCTCCACCGTCGCCTCGCCTCGCCTCCACCTCCACCTCCACTACCACCACCG TCTCCGGCGATGGAGGCCGCCGACCCCAGGTGATTCGGCGGCCGGTCTCCTCCCCGCCAC CGCCGCCGCCGCCGCCAATGGCGTGCCTCGCGCCGCACTTCAAGTGGGCGCCCTGCCCCC ACGCGCACCACCACCACTCTACTTCTTCTTTACCGTCGTCGTCGTCTTCGTCCACCTCGG CCCCTTCCTCGTCGTCGAGGTGCTCCTTCTCCCGCGGGGGCCCCTTCCGCGTCCACTGCG CGGTCACCGCCACCACCTCCGCCGCGGCGCCCGTCGTCGTAGAAGCTCCCGGCGGGGGGA TGCGGCTCGCGTACGCCGCCGCCCCGGACTCCTCCGCGCCGGCTCTCCAGAAAAAAATTC AATCGGCCCTGGCATCAGAAGTATTTCTAAATGAAGAGGCTGTTGTAACAGCTGCTGCAG CAGAGGCAGTTGCCCTTGCTAGAGCAGCTGCTGAAGCTGCACAGGAAGTTGTTCGTATGG TACAAAATAATAAAAATGAACGTAACACCAGACCAAAAAAAGCTGTGGTCAACTACTTGG CAAATGAAATACTTCGCACGGAAATGAAACCAAACATTCTTGATAAATATAGTGATGGCA TTTTGTCAGAGGAGATAGAGTCTTATGGCATCTTGAGTGATGAAGCTGAACTAGACGGTG ATACACAGGACATCCCTAGTATAGCTGTGAAGTCTGCTCGTCAAACTGAGAGAAGAGCTC GGAGAACGAGGGCAGCAATAAAGGCTGCTACCATAGTCCGTACTTCCCCAAAACCTGCAA CGTCCTCAAAGAAGAAGCGGTCAAAGGGCGCCTCTTCTGGCACAAATCCATTAGGTTCCT TGTGGAAGATGACGGGTCGCAGACTTCTTACAGCAAAGGAAGAGGTTGAGTTCTCGGAAG GTATTCAGGACCTCTTAAAGCTAGAAGCAATCCAAGCTGAGCTTGCAGAGTACAATGGTG GCCAGCCAACCTTCGCTCAGTGGGCTACAGCAGCTGGAGTTGATGAGAGAACTTTGCGGA AGCGTTTAGATCATGGTATTTATTGCAAGAATAGAATGGTTACATCCAATGTGCGACTTG TAATATCTATTGCCAGAGAGTTTGAAGGTCCAGGAATGGAACTTTATGATCTTATCCAGG TCTTCATTACAGGAAGGGATGCAGGGCCTTATAAGGGGTGCTGAAAAATTTGATGCATCA AAGGGTTTTAGGTTCTCGACATATTCTCACTGGTGGATCAAACAAGCAATGCGTAAATCT GTCTCAGAGCAATCACAGATATTTCGCTTGCCGGCTCACATGGTTGAAGCAAGCTATCGT GTGAAGGAGTGCATTAAACGTCTTCGTCGAAAGCTTAAAAGACGACCCACTAACGAAGAA ATAGCTGCAGACACTGGTATGCCGATCAAACGAGTCGAGGCAGCAGTGAACCTTCCAAAA TATTCTGTATCCCTTGATAGCAAAATTGGTAGCACAGACATGACTTACCAGGAAGTCACA GCTGATCCAACCGCCGAGACAGCCGAGGAGATGCTGAACAGATTGTCTATGAAACGGGAC GTACACAAGGCACTGGACACTCTTACCACCCGTGAGAGGCAAGTGGTGACACTTAGGTTT GGGCTCGAAGATGGTAGGATAAGAACCCTGCAGGAGATTGGCAACACCATGGGTGTGAGC AGGGAGAGGATCCGGCAAATAGAGTCAGCCGCATTTCGGAAACTGAGGAGCAAGAAGAGG GTGAATGCACTGAAGGATTATCTGGTACCAGTAGGCAATTGGTGACACTTTTGTCGACAT ACAACATTTTCCTTTCAAAATCCTTTTCTTTTTCTCTCCTTTTTGAGGATCCTTTACTTG TATTTTTTTTACCTTGGATCTTCATGTACAACACGTTGTCAGAATAGTGTAGCTCGTCCC CGACGAAGGAATCAACAGATTTTGCAGAGCTATTCATTTATACCGTCATCTACAGAAATT GAAATACC