Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0443700-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:14660801:14663959:1 gene:Os11g0443700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Short chain alcohol dehydrogenase-like. (Os11t0443700-01)
Sequence

ATGGCCACTGCCAGCTCTATAAACAAGAGGTTTAGCCTCGCCGGTGCCACGGCGCTTGTC
ACCGGTGGCAGCAAAGGCATCGGCCGCGCCATCGTGGAAGAGCTGGCGAGCTTCGGCGCG
ACGGTGCACACCTGCGCTCGGAACCAGGCGGAGCTGAGCAGATGCCAGGAGGAGTGGACG
GCCAAGGGCCTCGCCGTCACCGTCTCCGTCTGCGACGTGGCGGTGCGCGCCGACAGGGAG
GCGCTCGCCGGCAGGGTGTCCGCCATGTTCGACGGCAAGCTCAGCATCCTGGTGAACAAC
GCTGGGACGGCGTACCTGAAGCCGGCGGCGGACCTGACGCCGGAGGAGACGTCGAGGTTG
ATGACGACCAACTTCGAGTCGTGCTTCCACCTGAGCCAGCTGTTCTACCCTCTCCTCAAG
GACTCCGGAAGAGGCAGTATCGTTAATATCTCGTCCGTCGCTTCTGTCCTCGCGTTCCAT
TCTCTTCCTATCTACTCGGCTGCCAAAGGAGCAATGAACCAAGTCACAAGGAACCTGGCT
TGTGAGTGGGCGAGCGATGGGATCAGAGTCAATTCCGTTGCACCGGGCTACATCCAGACT
CCACTCCTAACTGCCTTCGTGGCCGGCAACGATTTCGCACAGGTTGAGTTCAACCGTCTT
CCTTTGGGCCGTCTCGGTAAACCTGAGGACATCTCGTCGTTGGTGGCGTTCCTGTGCATG
CCTGCGGCCTCCTACATCACTGGCCAGATTATATGCGTCGATGGGGGCCGTATGCTTTCT
TAA

Peptide Sequence

PEP ID

Os11t0443700-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:14660801:14663959:1 gene:Os11g0443700 transcript:Os11t0443700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Short chain alcohol dehydrogenase-like. (Os11t0443700-01)
Sequence

MATASSINKRFSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNQAELSRCQEEWT
AKGLAVTVSVCDVAVRADREALAGRVSAMFDGKLSILVNNAGTAYLKPAADLTPEETSRL
MTTNFESCFHLSQLFYPLLKDSGRGSIVNISSVASVLAFHSLPIYSAAKGAMNQVTRNLA
CEWASDGIRVNSVAPGYIQTPLLTAFVAGNDFAQVEFNRLPLGRLGKPEDISSLVAFLCM
PAASYITGQIICVDGGRMLS

Transcript Sequence

Transcript ID

Os11t0443700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:14660801:14663959:1 gene:Os11g0443700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Short chain alcohol dehydrogenase-like. (Os11t0443700-01)
Sequence

AAACAAGATTCACAGAAACTACCATCAATAACAGGACTCCTGCACTTCATACATGGCCAC
TGCCAGCTCTATAAACAAGAGGTTTAGCCTCGCCGGTGCCACGGCGCTTGTCACCGGTGG
CAGCAAAGGCATCGGCCGCGCCATCGTGGAAGAGCTGGCGAGCTTCGGCGCGACGGTGCA
CACCTGCGCTCGGAACCAGGCGGAGCTGAGCAGATGCCAGGAGGAGTGGACGGCCAAGGG
CCTCGCCGTCACCGTCTCCGTCTGCGACGTGGCGGTGCGCGCCGACAGGGAGGCGCTCGC
CGGCAGGGTGTCCGCCATGTTCGACGGCAAGCTCAGCATCCTGGTGAACAACGCTGGGAC
GGCGTACCTGAAGCCGGCGGCGGACCTGACGCCGGAGGAGACGTCGAGGTTGATGACGAC
CAACTTCGAGTCGTGCTTCCACCTGAGCCAGCTGTTCTACCCTCTCCTCAAGGACTCCGG
AAGAGGCAGTATCGTTAATATCTCGTCCGTCGCTTCTGTCCTCGCGTTCCATTCTCTTCC
TATCTACTCGGCTGCCAAAGGAGCAATGAACCAAGTCACAAGGAACCTGGCTTGTGAGTG
GGCGAGCGATGGGATCAGAGTCAATTCCGTTGCACCGGGCTACATCCAGACTCCACTCCT
AACTGCCTTCGTGGCCGGCAACGATTTCGCACAGGTTGAGTTCAACCGTCTTCCTTTGGG
CCGTCTCGGTAAACCTGAGGACATCTCGTCGTTGGTGGCGTTCCTGTGCATGCCTGCGGC
CTCCTACATCACTGGCCAGATTATATGCGTCGATGGGGGCCGTATGCTTTCTTAATAAAC
TCTACATATACAAAATAAAGATATATCATGTATCATAATATATTCTACTGAATTGGGAGA
CTTCCAAGAAGAATGAAATCTTTGTGTGCCCGTGTACCAACCACACACAACAGGCTAGCT
AGTCTTCTCTGCATGCGTAGAGCATAGACTGGGTGTAATGTGTAAAATGGCCAATATATA
TTTGTATTAAGTTTGGGAAATCATGTGGAGAAGATTGGCAAGCCGAGTGTAATGAATTTT
CCATGAAATAAAATTTACGGTTCCTATGATTATTGAT