Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0442900-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:14605584:14607289:1 gene:Os11g0442900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-type domain containing protein. (Os11t0442900-01)
Sequence

ATGGAGGGTGGTAATTCCAGCAAGGGCGCCATGGAGGGTGGTCACCGCTGCCGCCGCCCA
AACGTCGACGACGATGACCAGATCGAGGAGGGAGAGATCTGCTACGACTGCCACGTCTCG
GGCTCCGAGACCGACGACGACGAGCACCACAGACGCGCCGTGCTCCCTCCCCGCGACAAT
GGCGATGGCTGCGCGGAGCACAAACGGTGCCGCCTCGACAATGCTGCTACGGCGCCCGCA
CCCTCTGCCGGGCCGGTGCTGACCACCAGCAACGGAAGCGCCATCGTCGCCATCGCCTCC
GCTGCCGCCGCCGCAGCAGCTGCGGCGTCGACAATGGCGCGGGAGGTGTTCGCGTGCCGC
ATCTGCCGGAAGGAGTTCGACACCCGGAAGGCCGTGGACGGGCACATGAGAGTTCACCGT
CAGCAATCCATTGCCACCCCCAAGTATAATGCCGCAGACAACTCTCGTGTCACTGTGGTC
GCTGAGCCCAGAACCGATCTTGATCTTTCCGGTCCACACGGGAGCAGCAGCGCGCCGCCG
TCGCCACCAGCGCCGGCCAATCCTCCCAATCATAATCAGGCCGTCGGTCACCAACCAGCG
GCTGCCGCGCCGAACGCCGGCGTCGTCGTCGTCGTCGAAGGGGCGCCGCAAAAAAGTCTA
CCATACATGTGCAAGATGCAGGGCTGCGGCAGGGCGTTCCCCACGCACCAGGGGCTAGGT
GGCCACGCTGCCGGCCACCAGAACAGGAGCAAGGCAGCGGCGGCGGCGGCCTCCGAGCAG
GGCAGCAGCGGAGCGGGGGCCGACGGGTGCCACGGCGGCGCCGACAGCAGCAAGCATCGG
TGCAGAGAATGCGGCATGGAGTGGAAGACAGGTTTCGCGCTCGGCGGCCACATGAGGAAG
CACCAAACTAAGGAGACGGTGACCGTGAACGAGAAGGAGCCGAATGTCGCTGGCAAGCAC
ATCTCTCTTGGACCACCACCTTTGCCGGACCTTACTCCGGCCGCCGCTGAGGTAACTTCG
TCGGAACCACTTGATCAGCCACCACTACTGTCAATGGTGGTGGGTGCAGAAGTTGCAGCA
CCGGCGCTGCTTGCGCTGGCCAACGAGGCAGCGGCATTGCCGCCACAGGATGATCAGGCA
GAGGAAGAGGCGGCTGCAGAAGCCGCTGCACCGGCCGAGGCAGCGGCATTGCGACCGGTT
GAGGCAGGGGCAGAGGCGGCCGATGTTGGAGCAGCACCAGAGGAGCCGCTGCTGGCGCCT
ATTGCCGGCATGGGAACCGTGCGTATTTTCGGTTTTTTGGTTGAGAAGCCGGCACCTGGA
GACGGCAGTGGAGGAGAGGGTTCAGCGCCTGCATAG

Peptide Sequence

PEP ID

Os11t0442900-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:14605584:14607289:1 gene:Os11g0442900 transcript:Os11t0442900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-type domain containing protein. (Os11t0442900-01)
Sequence

MEGGNSSKGAMEGGHRCRRPNVDDDDQIEEGEICYDCHVSGSETDDDEHHRRAVLPPRDN
GDGCAEHKRCRLDNAATAPAPSAGPVLTTSNGSAIVAIASAAAAAAAAASTMAREVFACR
ICRKEFDTRKAVDGHMRVHRQQSIATPKYNAADNSRVTVVAEPRTDLDLSGPHGSSSAPP
SPPAPANPPNHNQAVGHQPAAAAPNAGVVVVVEGAPQKSLPYMCKMQGCGRAFPTHQGLG
GHAAGHQNRSKAAAAAASEQGSSGAGADGCHGGADSSKHRCRECGMEWKTGFALGGHMRK
HQTKETVTVNEKEPNVAGKHISLGPPPLPDLTPAAAEVTSSEPLDQPPLLSMVVGAEVAA
PALLALANEAAALPPQDDQAEEEAAAEAAAPAEAAALRPVEAGAEAADVGAAPEEPLLAP
IAGMGTVRIFGFLVEKPAPGDGSGGEGSAPA

Transcript Sequence

Transcript ID

Os11t0442900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:14605584:14607289:1 gene:Os11g0442900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-type domain containing protein. (Os11t0442900-01)
Sequence

CCACAGCCACCGAGCGGATTAGTGGAACAAACCCTAGCCTGAGTAGATTCTTCCTCTAGC
TTTCGCGAGCCGTATCGTATCCATTGGATGGAGCCCTAGAGCAACAAGAAGAAGCCAAGA
ATATTTGCGCCATGGAGGGTGGTAATTCCAGCAAGGGCGCCATGGAGGGTGGTCACCGCT
GCCGCCGCCCAAACGTCGACGACGATGACCAGATCGAGGAGGGAGAGATCTGCTACGACT
GCCACGTCTCGGGCTCCGAGACCGACGACGACGAGCACCACAGACGCGCCGTGCTCCCTC
CCCGCGACAATGGCGATGGCTGCGCGGAGCACAAACGGTGCCGCCTCGACAATGCTGCTA
CGGCGCCCGCACCCTCTGCCGGGCCGGTGCTGACCACCAGCAACGGAAGCGCCATCGTCG
CCATCGCCTCCGCTGCCGCCGCCGCAGCAGCTGCGGCGTCGACAATGGCGCGGGAGGTGT
TCGCGTGCCGCATCTGCCGGAAGGAGTTCGACACCCGGAAGGCCGTGGACGGGCACATGA
GAGTTCACCGTCAGCAATCCATTGCCACCCCCAAGTATAATGCCGCAGACAACTCTCGTG
TCACTGTGGTCGCTGAGCCCAGAACCGATCTTGATCTTTCCGGTCCACACGGGAGCAGCA
GCGCGCCGCCGTCGCCACCAGCGCCGGCCAATCCTCCCAATCATAATCAGGCCGTCGGTC
ACCAACCAGCGGCTGCCGCGCCGAACGCCGGCGTCGTCGTCGTCGTCGAAGGGGCGCCGC
AAAAAAGTCTACCATACATGTGCAAGATGCAGGGCTGCGGCAGGGCGTTCCCCACGCACC
AGGGGCTAGGTGGCCACGCTGCCGGCCACCAGAACAGGAGCAAGGCAGCGGCGGCGGCGG
CCTCCGAGCAGGGCAGCAGCGGAGCGGGGGCCGACGGGTGCCACGGCGGCGCCGACAGCA
GCAAGCATCGGTGCAGAGAATGCGGCATGGAGTGGAAGACAGGTTTCGCGCTCGGCGGCC
ACATGAGGAAGCACCAAACTAAGGAGACGGTGACCGTGAACGAGAAGGAGCCGAATGTCG
CTGGCAAGCACATCTCTCTTGGACCACCACCTTTGCCGGACCTTACTCCGGCCGCCGCTG
AGGTAACTTCGTCGGAACCACTTGATCAGCCACCACTACTGTCAATGGTGGTGGGTGCAG
AAGTTGCAGCACCGGCGCTGCTTGCGCTGGCCAACGAGGCAGCGGCATTGCCGCCACAGG
ATGATCAGGCAGAGGAAGAGGCGGCTGCAGAAGCCGCTGCACCGGCCGAGGCAGCGGCAT
TGCGACCGGTTGAGGCAGGGGCAGAGGCGGCCGATGTTGGAGCAGCACCAGAGGAGCCGC
TGCTGGCGCCTATTGCCGGCATGGGAACCGTGCGTATTTTCGGTTTTTTGGTTGAGAAGC
CGGCACCTGGAGACGGCAGTGGAGGAGAGGGTTCAGCGCCTGCATAGATCGTCCTAGTTA
TGATATTTGATTTTGTGATTTTCTTTAGCTATCTTCAGAGCCATTAGGATACTTGATTTA
GAGGCTTTCTTTATTATGTTCACCGCATAGTAGTTAAGATAATTTTTGCTTTTCGATAGC
AGAAGTGTTTTCTTCGTTGTACTAGCTAGTTGGCCGGGTTTTCGAGGTTAAAGACTATAA
GAAACTTACAGTTATATATGGTGTGC