Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0433600-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:14028186:14029896:1 gene:Os11g0433600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os11t0433600-01)
Sequence

TACAACCTCCTCCTCCAGGCCTACTGCGACTGCCGCCGCCCCGACACCGCGCTCGAGCAC
TTCCGCCTCCTCCTCAAGGACGACTCCCCCGTCCTCCCCTCGCCCACCACCTACCGCATC
CTCGCCCGCTCCCTCGCTGAGAATGGGAAGCTTGAACAGGCCATCGAGCTCAAAGATGGG
ATGCTGGAGCGTGGCCTCGTTGCCCCTGATCCCCAGGTGTACGCCCTTGTCATGGGTGGC
TTTGTCAACGCCGGGGATGGCGACACAGTGGTCTCTCTGTACGAGGAGCTTGTTGAGAAG
CTCGGCGGTGGGCAGATTCTTGATGGGATGGTTTATGGGAACTTAATGAAGGGGTACTTC
TTGAAGGGTATGGAGAAAGAGGCCATGGATTGCTACGCGGAGGTGCTTGGGGAGGGTTCG
AAGGTGAGGTTTGGGGCTGTGAGTTACAACATGGTGCTCGATGCCCTTGGGAGGAATGGG
AAGTTGGACGATGCGCTCCAGCTGTTTGATAGGATGTGCGAGGAGCATGATCCACCAAGG
AGGATTGCTGTGAACCTGGGGAGCTTTAATGTCATGGTGGATGCATACTGCCGGGCTGAA
AGGTTCCAGGATGCGATTGAGGTGTTTGGTAAGATGGGTGAGAAGAGGTGTGCTCCGGAT
GCACTCTCCTACAATAATCTGATTGACTGGCTTGGGAAGAATGAACTTGTTGGGGAGGCG
GAACAATTGTACAAGGAGATGGGTGAGCGTGGTGTTAACCCTGATGAGTACACTTATGTC
TTGCTAATTGAGTCCTACTTTAAGGTGGATAGGGTGGATGACTCTGTTTCTTACTTCAAT
AAGATGTTCGTTGCTGGCTTGAGACCTAATGCCAATGCATTTAACAAAGTTATTGGTGGC
TTGGTGAAGGTTGATAGGCTTGATGAGGCACAGGGGTTTTTTGATAAGATGCCAGAAAAG
GAAGTCAAGCCAAATATTGGTAGCTATGAGCTGTTGTTGAGGGCGTATATTGATGCTGCG
AGGTTGGATGATGCAATTAAGATGGCCAAGTGTATTCTTTTGGATGAGAGTGTTGTGTTT
AGCGATGAATTAAAGGCACTTTTGGAAGGGGCACTACAGAAAGATGGGAGAGATGGGGAT
ATGACGAAGTTGTATGAGGATGTTGAGAGGGAGAAAGCAGAGGCAGCTGCACGTGCAGCT
GAAGAGAAGGCTAGAGCGGAGGCTTTAGCTAAAGAAGAAGAGGAGAGGAAGAAGGCCGAG
GCAAAGGCCAAGGAGGAAGCTGCTGCCAGGGCTAGTCGAGCAGCAATTGAGGCAGTGCTT
GGTCGCAAGAAGGAAGGTGAAAATGATGATTCAACTGTTAATGTTGAGGAGGCGCAGGTT
GTTGAGTCCCATAGTGACACCAATGATATTACAGAAGAGAATGAAGGTGATGATCAGAAG
AAATCTGGTGATGCCTTGCCATAG

Peptide Sequence

PEP ID

Os11t0433600-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:14028186:14029896:1 gene:Os11g0433600 transcript:Os11t0433600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os11t0433600-01)
Sequence

YNLLLQAYCDCRRPDTALEHFRLLLKDDSPVLPSPTTYRILARSLAENGKLEQAIELKDG
MLERGLVAPDPQVYALVMGGFVNAGDGDTVVSLYEELVEKLGGGQILDGMVYGNLMKGYF
LKGMEKEAMDCYAEVLGEGSKVRFGAVSYNMVLDALGRNGKLDDALQLFDRMCEEHDPPR
RIAVNLGSFNVMVDAYCRAERFQDAIEVFGKMGEKRCAPDALSYNNLIDWLGKNELVGEA
EQLYKEMGERGVNPDEYTYVLLIESYFKVDRVDDSVSYFNKMFVAGLRPNANAFNKVIGG
LVKVDRLDEAQGFFDKMPEKEVKPNIGSYELLLRAYIDAARLDDAIKMAKCILLDESVVF
SDELKALLEGALQKDGRDGDMTKLYEDVEREKAEAAARAAEEKARAEALAKEEEERKKAE
AKAKEEAAARASRAAIEAVLGRKKEGENDDSTVNVEEAQVVESHSDTNDITEENEGDDQK
KSGDALP

Transcript Sequence

Transcript ID

Os11t0433600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:14028186:14029896:1 gene:Os11g0433600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os11t0433600-01)
Sequence

CTACAACCTCCTCCTCCAGGCCTACTGCGACTGCCGCCGCCCCGACACCGCGCTCGAGCA
CTTCCGCCTCCTCCTCAAGGACGACTCCCCCGTCCTCCCCTCGCCCACCACCTACCGCAT
CCTCGCCCGCTCCCTCGCTGAGAATGGGAAGCTTGAACAGGCCATCGAGCTCAAAGATGG
GATGCTGGAGCGTGGCCTCGTTGCCCCTGATCCCCAGGTGTACGCCCTTGTCATGGGTGG
CTTTGTCAACGCCGGGGATGGCGACACAGTGGTCTCTCTGTACGAGGAGCTTGTTGAGAA
GCTCGGCGGTGGGCAGATTCTTGATGGGATGGTTTATGGGAACTTAATGAAGGGGTACTT
CTTGAAGGGTATGGAGAAAGAGGCCATGGATTGCTACGCGGAGGTGCTTGGGGAGGGTTC
GAAGGTGAGGTTTGGGGCTGTGAGTTACAACATGGTGCTCGATGCCCTTGGGAGGAATGG
GAAGTTGGACGATGCGCTCCAGCTGTTTGATAGGATGTGCGAGGAGCATGATCCACCAAG
GAGGATTGCTGTGAACCTGGGGAGCTTTAATGTCATGGTGGATGCATACTGCCGGGCTGA
AAGGTTCCAGGATGCGATTGAGGTGTTTGGTAAGATGGGTGAGAAGAGGTGTGCTCCGGA
TGCACTCTCCTACAATAATCTGATTGACTGGCTTGGGAAGAATGAACTTGTTGGGGAGGC
GGAACAATTGTACAAGGAGATGGGTGAGCGTGGTGTTAACCCTGATGAGTACACTTATGT
CTTGCTAATTGAGTCCTACTTTAAGGTGGATAGGGTGGATGACTCTGTTTCTTACTTCAA
TAAGATGTTCGTTGCTGGCTTGAGACCTAATGCCAATGCATTTAACAAAGTTATTGGTGG
CTTGGTGAAGGTTGATAGGCTTGATGAGGCACAGGGGTTTTTTGATAAGATGCCAGAAAA
GGAAGTCAAGCCAAATATTGGTAGCTATGAGCTGTTGTTGAGGGCGTATATTGATGCTGC
GAGGTTGGATGATGCAATTAAGATGGCCAAGTGTATTCTTTTGGATGAGAGTGTTGTGTT
TAGCGATGAATTAAAGGCACTTTTGGAAGGGGCACTACAGAAAGATGGGAGAGATGGGGA
TATGACGAAGTTGTATGAGGATGTTGAGAGGGAGAAAGCAGAGGCAGCTGCACGTGCAGC
TGAAGAGAAGGCTAGAGCGGAGGCTTTAGCTAAAGAAGAAGAGGAGAGGAAGAAGGCCGA
GGCAAAGGCCAAGGAGGAAGCTGCTGCCAGGGCTAGTCGAGCAGCAATTGAGGCAGTGCT
TGGTCGCAAGAAGGAAGGTGAAAATGATGATTCAACTGTTAATGTTGAGGAGGCGCAGGT
TGTTGAGTCCCATAGTGACACCAATGATATTACAGAAGAGAATGAAGGTGATGATCAGAA
GAAATCTGGTGATGCCTTGCCATAGGTCAGACCTTTGTTTCGTTGTTCTATTCTCAGTTA
ATGGTTAGTTTTGTTTCAATAGTAGAATTCTATTTTAAGAGAGTATCTAGTAGATGGTTA
ACTTGATAATTTGAATGGAAAGTTATTCAAGTTGCTACTGATTGTATGCTGGAATCTTAT
GTGCCACATCGGTCATTTGGAGATAATCAGATAAATATATTTTTATCCCTATGACTGCTA
GAATTTAAATTACTAGTCCTGCTTACTAGAT