Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0431700-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:13890814:13915531:-1 gene:Os11g0431700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SERINE CARBOXYPEPTIDASE 54 description:Similar to Serine carboxypeptidase. (Os11t0431700-01)
Sequence

ATGGCTGTGCGGCTCTGCTGCTGCTGCTTCCTCCTCTTCGTCACCATCGCTGCCGCCGGT
GGCTCCCTGACGCGGACGAACGTCGCGACGCTGCCGGGGTTCGACGGCGCGCTGCCTTCA
CGCCTCGAGACCGGGTACGTGACGGTCGACGAGGAGAACGGCGCCGAGCTGTTCTACTAC
TTCATCGAGTCGGAGGGCGACCCCAGCACCGACCCCGTCCTCCTCTGGATCACCGGCGGC
GACCGCTGCTCCGTCCTCAGCGCCCTCTTCTTCGAGATTGGGCCGTTGAAGCTGGTCATC
GAGCCCTACAACGGCAGCTTGCCGCGGCTGCACTACCACCCTTACTCGTGGACAAAGGTC
GCCAGCATCCTCTTCGTCGACTCGCCGGTCGGCGCCGGCTTCTCCTTCTCAAGGGACCCT
AAGGGGTACGACGTCGGCGACGTCTCTGCTTCGATGCAGCTCATCAAGCTTCTCAGGGAG
TGGTTCACTGAGTATCCGCACTACCTCTCAAATCCGTTCTACGTTGGAGGAGACTCCTAT
GCCGGAAAGATCGTCCCGTTTATCGTGCAGAAGATCTCGGAAGATATTGAAGCTGGCGTC
AGACCGACGTTTAATCTGAAGGGCTATCTGGTAGGTAATCCGAGTACAGGGGAACGCATT
GACCTCGAATCAAGAGTGCCGTACAGCCATGGAGTCGGAATCATTTCAGATCAGTTATAT
GAGATGATAATGGAGCACTGCGAAGGTGAGGATTATGACAATCCCAGCAACGTGATTTGC
CAACAAGCTTTGGCTAGGTTTGACAGCCTACTACACGAAGGTTCGAGGGCCCAAATTTTG
AACCCAAATTGCATTTATGTGTCCCCCAAGCCAAATCATGAGACAATCGACAGAAAGATC
TTGAAGGGGGAGCATGGAGGACTAAAACATCCACCTCCTCAACCTTCAATAAAATGTGGT
GTCTATGCCAACTATTTGTCATATTTTTGGGCAAACAACAACTTTACACGAAGAACTCTA
GGAATCAAGAAGGGCACCATAAATGAATGGGTTAGGTGCCACGAACATGATCTACCATAC
AACATCGACATCAGGAGCAGCATAAAGTATCATCGAAATGTTACACTAAAAGTGGTGACC
ACGATGCTGTTGTGCCATTCCTCGGGACACAAGCCTGGGTGA

Peptide Sequence

PEP ID

Os11t0431700-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:13890814:13915531:-1 gene:Os11g0431700 transcript:Os11t0431700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SERINE CARBOXYPEPTIDASE 54 description:Similar to Serine carboxypeptidase. (Os11t0431700-01)
Sequence

MAVRLCCCCFLLFVTIAAAGGSLTRTNVATLPGFDGALPSRLETGYVTVDEENGAELFYY
FIESEGDPSTDPVLLWITGGDRCSVLSALFFEIGPLKLVIEPYNGSLPRLHYHPYSWTKV
ASILFVDSPVGAGFSFSRDPKGYDVGDVSASMQLIKLLREWFTEYPHYLSNPFYVGGDSY
AGKIVPFIVQKISEDIEAGVRPTFNLKGYLVGNPSTGERIDLESRVPYSHGVGIISDQLY
EMIMEHCEGEDYDNPSNVICQQALARFDSLLHEGSRAQILNPNCIYVSPKPNHETIDRKI
LKGEHGGLKHPPPQPSIKCGVYANYLSYFWANNNFTRRTLGIKKGTINEWVRCHEHDLPY
NIDIRSSIKYHRNVTLKVVTTMLLCHSSGHKPG

Transcript Sequence

Transcript ID

Os11t0431700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:13890814:13915531:-1 gene:Os11g0431700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SERINE CARBOXYPEPTIDASE 54 description:Similar to Serine carboxypeptidase. (Os11t0431700-01)
Sequence

GCTACCGCTTGCCAGTTGCCGTTCTCCCGTGCGAGGACAAGGCAGTACAGTACAATGGCT
GTGCGGCTCTGCTGCTGCTGCTTCCTCCTCTTCGTCACCATCGCTGCCGCCGGTGGCTCC
CTGACGCGGACGAACGTCGCGACGCTGCCGGGGTTCGACGGCGCGCTGCCTTCACGCCTC
GAGACCGGGTACGTGACGGTCGACGAGGAGAACGGCGCCGAGCTGTTCTACTACTTCATC
GAGTCGGAGGGCGACCCCAGCACCGACCCCGTCCTCCTCTGGATCACCGGCGGCGACCGC
TGCTCCGTCCTCAGCGCCCTCTTCTTCGAGATTGGGCCGTTGAAGCTGGTCATCGAGCCC
TACAACGGCAGCTTGCCGCGGCTGCACTACCACCCTTACTCGTGGACAAAGGTCGCCAGC
ATCCTCTTCGTCGACTCGCCGGTCGGCGCCGGCTTCTCCTTCTCAAGGGACCCTAAGGGG
TACGACGTCGGCGACGTCTCTGCTTCGATGCAGCTCATCAAGCTTCTCAGGGAGTGGTTC
ACTGAGTATCCGCACTACCTCTCAAATCCGTTCTACGTTGGAGGAGACTCCTATGCCGGA
AAGATCGTCCCGTTTATCGTGCAGAAGATCTCGGAAGATATTGAAGCTGGCGTCAGACCG
ACGTTTAATCTGAAGGGCTATCTGGTAGGTAATCCGAGTACAGGGGAACGCATTGACCTC
GAATCAAGAGTGCCGTACAGCCATGGAGTCGGAATCATTTCAGATCAGTTATATGAGATG
ATAATGGAGCACTGCGAAGGTGAGGATTATGACAATCCCAGCAACGTGATTTGCCAACAA
GCTTTGGCTAGGTTTGACAGCCTACTACACGAAGGTTCGAGGGCCCAAATTTTGAACCCA
AATTGCATTTATGTGTCCCCCAAGCCAAATCATGAGACAATCGACAGAAAGATCTTGAAG
GGGGAGCATGGAGGACTAAAACATCCACCTCCTCAACCTTCAATAAAATGTGGTGTCTAT
GCCAACTATTTGTCATATTTTTGGGCAAACAACAACTTTACACGAAGAACTCTAGGAATC
AAGAAGGGCACCATAAATGAATGGGTTAGGTGCCACGAACATGATCTACCATACAACATC
GACATCAGGAGCAGCATAAAGTATCATCGAAATGTTACACTAAAAGTGGTGACCACGATG
CTGTTGTGCCATTCCTCGGGACACAAGCCTGGGTGAGATCACTCAACTACCCAATTGTGG
ATGACTGGAGAGCCTGGCATATCGATGGCCAGTCTGCTGGATTCACCATAGCATATGGAA
ACAATTTGACATTCGCTACAGTAAAGGGTGCTGGACACACTGCACCAGAGTTTGAGCCGG
AGAGGTGCTTTGCAATGTTTAAGCGTTGGATTTCCAGCATACCACTATGATGATGGATGT
GCATATCGTGTAACTTGCACAAATGGAGGATTGTAGTATGAATGTCATGGGTGAATAAAA
TCAATTCTTTTTTGGGAAGGCTC