Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0425300-02
CDS Infomation

cds chromosome:IRGSP-1.0:11:13460527:13466777:-1 gene:Os11g0425300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to predicted protein. (Os11t0425300-01);Conserved hypothetical protein. (Os11t0425300-02)
Sequence

ATGGCGATTCTGCCCCTCTCGATTTCCCACTCTCTTACCTCCGCCTTGTCCGCCACCTCC
TCCGGCATCGGCAGGCCAGTTGCCCGCCTCCTCCACCCGCGGGTCCCCTCCCGTCCCACC
GTCATCTGCCTCGCCGCGCCGCCCAAGGTACCCGTCCCCATCGCCTCACCGGCTTCACTA
GGGGACGACCCTTCCAAATGGGACCCGGCCGAGTGCGACGCCCTTCTCCGCGGCGGCGAG
CAGGTCGCCTCCGTGCTCCAGGAGATGCTCAAGCTGATGGAAGACATGGAGATGGATGGC
TCGTTTGAATCATTGGCTGTGGAGTTGATCGCTCAAGGAGTCATTGGGAAAAGAGTTGAT
GAGATGGAATCTGGCTTTCTAATGGCACTTGATTACATGATACAGCTTGCTGAGAAGGAT
AGTGACAATGAGCGTAAATCTCTCCTTGAGGTAGTCAAGCAGACAGTGCTGGATCATCTC
ACAAAAAAATGCCCTCCACATGTTCAAGTGGTTGGACTTCTTTGCCAGACTGAAAAGAAG
GATAGCAGACATGAATTACTGCGTCGTGTAGCTGCTGGTGGAGGTGTGTTTAAAAATGAT
AAAGGCCTTAAGTGCCAGATTCCAGGGGCCAATCTTAATGATATTGCAAACCAGGCAGAT
GATCTCTTGGAGTCAATGGAATCAAGGCCCACAATTCCTGATCGAAAACTTCTCGCTAGA
CTAGTTATCGTAAGAGAGGAGGCTCGAAATATGATGGGAGGTGGCCTGTTAGATGAAAGA
AATGACCGTGGTTTCACAACGCTTCCTGAGGCAGAGGTGAACTTCTTGAGCAAGCTGGTT
GCTCTCAAACCTGGGAAAGCATTGGAGAGGATGATCAAGGATGTTATGCAGGGCAAGGCA
GAAGGTGCTGATAACATTGAAAATGCAAATGCTGGACCAGATTCTAAGCTTAATCATCTA
ACTGGGATATCTGGAAGGGGAAGTGTGACAGGCCTCAAGCCACGGCCAGTCCGTCCAGGA
ATGTTCCTTGAGACGGTTTCTAAGGTGGTATATATGCAAACAACACATCTGGCATTACAG
CACAACATCTAG

Peptide Sequence

PEP ID

Os11t0425300-02
PEP Infomation

pep chromosome:IRGSP-1.0:11:13460527:13466777:-1 gene:Os11g0425300 transcript:Os11t0425300-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to predicted protein. (Os11t0425300-01);Conserved hypothetical protein. (Os11t0425300-02)
Sequence

MAILPLSISHSLTSALSATSSGIGRPVARLLHPRVPSRPTVICLAAPPKVPVPIASPASL
GDDPSKWDPAECDALLRGGEQVASVLQEMLKLMEDMEMDGSFESLAVELIAQGVIGKRVD
EMESGFLMALDYMIQLAEKDSDNERKSLLEVVKQTVLDHLTKKCPPHVQVVGLLCQTEKK
DSRHELLRRVAAGGGVFKNDKGLKCQIPGANLNDIANQADDLLESMESRPTIPDRKLLAR
LVIVREEARNMMGGGLLDERNDRGFTTLPEAEVNFLSKLVALKPGKALERMIKDVMQGKA
EGADNIENANAGPDSKLNHLTGISGRGSVTGLKPRPVRPGMFLETVSKVVYMQTTHLALQ
HNI

Transcript Sequence

Transcript ID

Os11t0425300-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:13460527:13466777:-1 gene:Os11g0425300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to predicted protein. (Os11t0425300-01);Conserved hypothetical protein. (Os11t0425300-02)
Sequence

AGTAGTGGCGCTACCTCTTTCTTCTCTCTATCTCTCAACGAGCGCGGCGCGAGCAAGAGG
AGCGCGCACCCCGGCGACATCAGAGCTCGTCGACGCCGGGGACTCTGCGCGGCGGCTAGG
GAGTTCGCCCGCCGGAGCAAGGGCTGGGCGGGACAAAGAGAAGAAATCTGCAGCGAACCC
ATGGCGATTCTGCCCCTCTCGATTTCCCACTCTCTTACCTCCGCCTTGTCCGCCACCTCC
TCCGGCATCGGCAGGCCAGTTGCCCGCCTCCTCCACCCGCGGGTCCCCTCCCGTCCCACC
GTCATCTGCCTCGCCGCGCCGCCCAAGGTACCCGTCCCCATCGCCTCACCGGCTTCACTA
GGGGACGACCCTTCCAAATGGGACCCGGCCGAGTGCGACGCCCTTCTCCGCGGCGGCGAG
CAGGTCGCCTCCGTGCTCCAGGAGATGCTCAAGCTGATGGAAGACATGGAGATGGATGGC
TCGTTTGAATCATTGGCTGTGGAGTTGATCGCTCAAGGAGTCATTGGGAAAAGAGTTGAT
GAGATGGAATCTGGCTTTCTAATGGCACTTGATTACATGATACAGCTTGCTGAGAAGGAT
AGTGACAATGAGCGTAAATCTCTCCTTGAGGTAGTCAAGCAGACAGTGCTGGATCATCTC
ACAAAAAAATGCCCTCCACATGTTCAAGTGGTTGGACTTCTTTGCCAGACTGAAAAGAAG
GATAGCAGACATGAATTACTGCGTCGTGTAGCTGCTGGTGGAGGTGTGTTTAAAAATGAT
AAAGGCCTTAAGTGCCAGATTCCAGGGGCCAATCTTAATGATATTGCAAACCAGGCAGAT
GATCTCTTGGAGTCAATGGAATCAAGGCCCACAATTCCTGATCGAAAACTTCTCGCTAGA
CTAGTTATCGTAAGAGAGGAGGCTCGAAATATGATGGGAGGTGGCCTGTTAGATGAAAGA
AATGACCGTGGTTTCACAACGCTTCCTGAGGCAGAGGTGAACTTCTTGAGCAAGCTGGTT
GCTCTCAAACCTGGGAAAGCATTGGAGAGGATGATCAAGGATGTTATGCAGGGCAAGGCA
GAAGGTGCTGATAACATTGAAAATGCAAATGCTGGACCAGATTCTAAGCTTAATCATCTA
ACTGGGATATCTGGAAGGGGAAGTGTGACAGGCCTCAAGCCACGGCCAGTCCGTCCAGGA
ATGTTCCTTGAGACGGTTTCTAAGGTGGTATATATGCAAACAACACATCTGGCATTACAG
CACAACATCTAGAATGGGTACATCAAACAACACTGAAGATTCTTCAGGAAATGGCCTTCT
AATGCTGTTTTCTGGACGACATTCACTGCCCTGTTCAAGTATATGAACTCCCTAGATTCT
TGGCCCTTTTAAGCTTATGATATTACAGCCTAGTGGGCAAAAGGATCATGGTATGGACCT
TAGTCTTGCTGCAAAAACTTATTGATTTTTTTTTACCAGTGAATGGCAAATCTTGGAGGA
ACTTGAGTGGCCATTACTAATATAGTTAAAAATAGAAGCAGAAGAAATGATGTCTGGGCA
TGCAAAGGCCAATGGTGATCTCTGGGTGGAATGTAATATTTATACCACATTTAGTGCAGA
AGTAAAGTAAGAGCTTCGAAAAGCAAATAGTCAAATGGACACAGTGATATTTAGCTTAGC
TTCCTACAATGGATATTAAGAGAGTTTAGCTTACTTTTGAGTGAAATAGAAGATGGCCTT
AGATCTAACATGATATGTATCGCCCTTTTCCATTTTGCAGGATTTTCTTTGTCTCAAAAT
ATATTTTCAAATTTTATATTGCTGGAAGCCAGGGATACTTTTTACCAGTAAATGTTTTTG
GTTTTCCAAACGAGAATATGATCTTGTGATGAATCGATTCTATGTTTTGCTT