Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0309000-03
CDS Infomation	cds chromosome:IRGSP-1.0:11:11786136:11801722:-1 gene:Os11g0309000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Synaptojanin, N-terminal domain containing protein. (Os11t0309000-01);Similar to predicted protein. (Os11t0309000-02);Synaptojanin, N-terminal domain containing protein. (Os11t0309000-03)
Sequence	ATGAGTGTTGCAACTGAAGCATGCCCTTCACCAAAGCTACACACAAGACTAAGGCTGTGG GAGTTTGCAGACCGTTACGTATTTGAACCAGTTGACGGTCTTGCTGATTTGTTCCTGTCA GTTGATCGGACAAATGGATCAATGAGTCTAGTGGAAGAGTTGCCACCTCGTGGTCCCTCT ACAAATCCTAAAGTTAGAATAGTTTTTGGTGTGATTGGAGTGCTCAAACTTGCAGTTCGG TCGTACTTTCTTGTGATCACTGGCCGTGATTGTGTTGGATCCTACTTGGGGCATGCAATT TTCAAATTGACGGGACTAAAAGTTCTGCCATGCAATAACTCGTTAAATACTTCTTCTGCT GAGCAGAAGAAAATGGAATCAGAATTTTCGGAACTTCTGGATGCAGCAGAGAGGACTATA GGCCTGTACTTCTCCTATGATGTCAACTTAACACTAACTTCACAGAGGCTGCATGATCTA GGAGATCAGTTTAAGTCACTTCCACTTTGGAGACAGGCAGAACCAAGATTTCTTTGGAAC GGTTACTTGTTGGAGCCTCTAATTGAGAACAAACTGCACCAATACTTACTACCAGTCATT CAAGGAAGTTTTCAGAGTATCCATGCAGAAGTTGGGTCAGAGAAGGTAAATGTGACCCTG ATTGCACGTCGGTGTACACGTAGGATAGGTACCCGGATGTGGAGGCGAGGAGCTGATCCA GAGGGTTATGCTGCAAATTTTGTTGAATCAGAGCAGATAATGCAATCGAAAGAATTTACA GCATCATATGTGCAAGTTCGAGGTTCTATGCCTTTTTTGTGGGAACAAATTGTTGATTTG ACATATAAACCTAGTTTTGATGTTGTCAGAGTAGAGGAGGCGCCTCGTGTACTTGAACGG CATTTTCATGATTTACAAAAGAAATATGGAGCTGTCGTGGCTGTTGATCTTGTCAATACA CATGGTGGCGAAGGTCGCCTGTATGAAAGATATGCAAAATCAATTGAGCCTATCTTGAGT GAAGATATAAGATTTGTGCATTTTGACTTCCATCAAATCTGTGGTCATATTCACTTTGAA CGCCTTTCTCAACTGTATGATCAAATTGAGGATTATCTTAAGAAGCATAGGTACTTCCTT TTAAATAGTAAAGGTGAGAAAATGGAAGAGCAGACCGGAACCGTTAGAACAAATTGTGTC GATTGTCTGGATCGTACTAATGTAACTCAGAGCATGATCGGGAGAAAAATATTGGAAAGC CAACTGCAAAAAATCAGTGTTCTTGGTGACAACAATACAATCAGCGATTATCCGGCATTT GATGCAGATTACAAAGTTTTGTGGGCCAACCATGGCGATGCAATAAGCACTCAGTACTCT GGAACTCCTGCCTTGAAGGGAGACTTTGTGCGGTACGGAAAGCGAACTACACAGGGAATT TTAAATGATCTGTGGAATGCAATGGCTAGATATTACCTGAACAACTTTGCAGATGGTACT AAACAGGATGCCATGGATCTTCTTCAAGGACATCACATATCCTCAGTTAGTCGGGATATG CCAACTCCAACCAAAGGACTTATAGAGAATCACGCGTCCTTCCGCCTTGCTTTTGCTCTG CTTTTGGCTGCCGTGATATTCTTGATAATGTCACTGAGAAGAGCACGTAATGATGTTTTC CATTTGGTGCTGTCACTACTATGGTCTGGTTTTTGCTTTGGCATCACGCGTTATGTCAAA GCTAACGGACGGAAGTTCACGAACCGTCCTCGCTTTCACCTATCGCGCCATTGA

Peptide Sequence

PEP ID	Os11t0309000-03
PEP Infomation	pep chromosome:IRGSP-1.0:11:11786136:11801722:-1 gene:Os11g0309000 transcript:Os11t0309000-03 gene_biotype:protein_coding transcript_biotype:protein_coding description:Synaptojanin, N-terminal domain containing protein. (Os11t0309000-01);Similar to predicted protein. (Os11t0309000-02);Synaptojanin, N-terminal domain containing protein. (Os11t0309000-03)
Sequence	MSVATEACPSPKLHTRLRLWEFADRYVFEPVDGLADLFLSVDRTNGSMSLVEELPPRGPS TNPKVRIVFGVIGVLKLAVRSYFLVITGRDCVGSYLGHAIFKLTGLKVLPCNNSLNTSSA EQKKMESEFSELLDAAERTIGLYFSYDVNLTLTSQRLHDLGDQFKSLPLWRQAEPRFLWN GYLLEPLIENKLHQYLLPVIQGSFQSIHAEVGSEKVNVTLIARRCTRRIGTRMWRRGADP EGYAANFVESEQIMQSKEFTASYVQVRGSMPFLWEQIVDLTYKPSFDVVRVEEAPRVLER HFHDLQKKYGAVVAVDLVNTHGGEGRLYERYAKSIEPILSEDIRFVHFDFHQICGHIHFE RLSQLYDQIEDYLKKHRYFLLNSKGEKMEEQTGTVRTNCVDCLDRTNVTQSMIGRKILES QLQKISVLGDNNTISDYPAFDADYKVLWANHGDAISTQYSGTPALKGDFVRYGKRTTQGI LNDLWNAMARYYLNNFADGTKQDAMDLLQGHHISSVSRDMPTPTKGLIENHASFRLAFAL LLAAVIFLIMSLRRARNDVFHLVLSLLWSGFCFGITRYVKANGRKFTNRPRFHLSRH

Transcript Sequence

Transcript ID	Os11t0309000-03
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:11786136:11801722:-1 gene:Os11g0309000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Synaptojanin, N-terminal domain containing protein. (Os11t0309000-01);Similar to predicted protein. (Os11t0309000-02);Synaptojanin, N-terminal domain containing protein. (Os11t0309000-03)
Sequence	TTCATTCCACCCTCTTCCGATCCCCAACCGCCGCTGGTCCGTATCCATTCCACTCTCCTC CGACCCCTACCGCTGCCGGAGTGCTAGGGCATCACACGATGAGTGTTGCAACTGAAGCAT GCCCTTCACCAAAGCTACACACAAGACTAAGGCTGTGGGAGTTTGCAGACCGTTACGTAT TTGAACCAGTTGACGGTCTTGCTGATTTGTTCCTGTCAGTTGATCGGACAAATGGATCAA TGAGTCTAGTGGAAGAGTTGCCACCTCGTGGTCCCTCTACAAATCCTAAAGTTAGAATAG TTTTTGGTGTGATTGGAGTGCTCAAACTTGCAGTTCGGTCGTACTTTCTTGTGATCACTG GCCGTGATTGTGTTGGATCCTACTTGGGGCATGCAATTTTCAAATTGACGGGACTAAAAG TTCTGCCATGCAATAACTCGTTAAATACTTCTTCTGCTGAGCAGAAGAAAATGGAATCAG AATTTTCGGAACTTCTGGATGCAGCAGAGAGGACTATAGGCCTGTACTTCTCCTATGATG TCAACTTAACACTAACTTCACAGAGGCTGCATGATCTAGGAGATCAGTTTAAGTCACTTC CACTTTGGAGACAGGCAGAACCAAGATTTCTTTGGAACGGTTACTTGTTGGAGCCTCTAA TTGAGAACAAACTGCACCAATACTTACTACCAGTCATTCAAGGAAGTTTTCAGAGTATCC ATGCAGAAGTTGGGTCAGAGAAGGTAAATGTGACCCTGATTGCACGTCGGTGTACACGTA GGATAGGTACCCGGATGTGGAGGCGAGGAGCTGATCCAGAGGGTTATGCTGCAAATTTTG TTGAATCAGAGCAGATAATGCAATCGAAAGAATTTACAGCATCATATGTGCAAGTTCGAG GTTCTATGCCTTTTTTGTGGGAACAAATTGTTGATTTGACATATAAACCTAGTTTTGATG TTGTCAGAGTAGAGGAGGCGCCTCGTGTACTTGAACGGCATTTTCATGATTTACAAAAGA AATATGGAGCTGTCGTGGCTGTTGATCTTGTCAATACACATGGTGGCGAAGGTCGCCTGT ATGAAAGATATGCAAAATCAATTGAGCCTATCTTGAGTGAAGATATAAGATTTGTGCATT TTGACTTCCATCAAATCTGTGGTCATATTCACTTTGAACGCCTTTCTCAACTGTATGATC AAATTGAGGATTATCTTAAGAAGCATAGGTACTTCCTTTTAAATAGTAAAGGTGAGAAAA TGGAAGAGCAGACCGGAACCGTTAGAACAAATTGTGTCGATTGTCTGGATCGTACTAATG TAACTCAGAGCATGATCGGGAGAAAAATATTGGAAAGCCAACTGCAAAAAATCAGTGTTC TTGGTGACAACAATACAATCAGCGATTATCCGGCATTTGATGCAGATTACAAAGTTTTGT GGGCCAACCATGGCGATGCAATAAGCACTCAGTACTCTGGAACTCCTGCCTTGAAGGGAG ACTTTGTGCGGTACGGAAAGCGAACTACACAGGGAATTTTAAATGATCTGTGGAATGCAA TGGCTAGATATTACCTGAACAACTTTGCAGATGGTACTAAACAGGATGCCATGGATCTTC TTCAAGGACATCACATATCCTCAGTTAGTCGGGATATGCCAACTCCAACCAAAGGACTTA TAGAGAATCACGCGTCCTTCCGCCTTGCTTTTGCTCTGCTTTTGGCTGCCGTGATATTCT TGATAATGTCACTGAGAAGAGCACGTAATGATGTTTTCCATTTGGTGCTGTCACTACTAT GGTCTGGTTTTTGCTTTGGCATCACGCGTTATGTCAAAGCTAACGGACGGAAGTTCACGA ACCGTCCTCGCTTTCACCTATCGCGCCATTGATGCGAACAAAAGGGATTATATACACACT CATGGTCGACTCACCTTTCTGGGCATGCATGTGTGCTCTCAGTTTTGTATCAAGTTTAAC TTTCCCTCTTTGTAAGATTTTGCACATGTTCTGACCATCACGGCTTTATATTTTCTTGTT GAATGGGAACATCAGGAATTGATTTGTTCTATTGCATTTATTTATTTATTTATTTATTTA TATAAACGTTTTGCAGAAAATGTTGCAAAGATGTATATGATGATCAAAATTGCAAATGGT TTAGGGTTTCATATATTTTGGGC