Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0299300-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:11110526:11112183:-1 gene:Os11g0299300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Lipase, class 3 family protein. (Os11t0299300-01)
Sequence

ATGGCGATACACCTGACCAACCCTCCTCCGGGGCTCTACGCCACCAAGACACCCTCGCAG
CAGCAGCAGCAGCACAGGCCCGCGGGTAGCCATGCCGCTGCGGCGGCGGCGGCGACGGTG
GCGATGCCGCAGACGGCGTCCGCGGCGTCGTCGAGCGTGGCGGTGAAGAAGAACATGAGG
CAGGCTGCGCCGGTGGTGGTGGCGAGGAGGAGGACGACAGCGGTGGAGAGTGGCGGAGTG
GCGTTGGCGAGCGTGTGGAGGGAGGTGCAGGGGGAGAGGGATTGGGAGGGCATGGTGGAG
GGCACGGCCGAGGAGGAGCTGCACCCGCTCCTCCGCGGCGAGATCGTCCGGTACGGCGAG
CTGGTGGCGGCGACGTACAAGGCGTTCGACCTCGACGCCGCGTCAAAGCGCTACCTCAAC
TGCAAGTACGGCAAGGCCCGGATGCTCGACGAGGTCGGCATGGCCGGCGCAGGGTACGAG
GTCACGAGGTACATCTACGCCGCGCCCGACCTCGCCGCCGGCCCGCCGTGCCCGAGCCGG
TGGATCGGGTACGTCGCCGTGGCCACGGACGAGGCGGTGCGCCGCCTCGGCCGCCGCGAC
ATCGTCGTGTCGTTCCGCGGCACGGTCACCGGGTCCGAGTGGGTGGCCAACATGATGAGC
TCGCTGGCGCCGGCGAGGTTCGACCCGGCCGACCCGCGCCCCGACGTGAAGGTCGAGTCG
GGCTTCCTCTCCGTCTACACCTCCGACGACGCCACCTGCCGCTTCACCTGCGGCAGCTGC
CGGAACCAGCTCCTCTCCGAGGTGACCCGCCTCATCGCCAAGCACAAGCACGAGGACGTC
AGCGTCACCCTCGCCGGCCACAGCATGGGCAGCTCGCTGGCGCTGCTACTAGGCTATGAC
CTCGCCGAGCTTGGCCTCAACCGGGACGCCCGCGGCCGCGCCGTGCCGATCACCGTCTTC
TCCTTCGCCGGCCCTCGTGTCGGGAACACGGCGTTCAAGGACAGGTGCGACGAGCTCGGC
GTCAAGGTGCTCAGGGTGGTAAATGTGAACGACCCCATCACCAAGCTCCCCGGCATCTTC
CTGAACGAGAATTCTAGGGTTTTGGGAGGCAAGCTGGAGCTGCCATGGAGTAGCTCATGC
TACACACATGTGGGAGTGGAGCTTGCCCTAGACTTCTTCAAGGCGAGAGACCCAGCTTGT
GTGCATGACTTGGAAGCATACTTAGGGTTGCTCAAGTGCCCTAAGGTGACAAAAGTGATG
AAAGAAGGGGAGGATCTCTTTAGCAAGGCCAAGAAAATTGTTCTTGAGCAAAGTTTTGAC
ACTTGGAGGTGGCAAATGGCTGCAATTCAAGTTGGTGGCTTGGTACAAGCCCTAGGAATG
TAG

Peptide Sequence

PEP ID

Os11t0299300-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:11110526:11112183:-1 gene:Os11g0299300 transcript:Os11t0299300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Lipase, class 3 family protein. (Os11t0299300-01)
Sequence

MAIHLTNPPPGLYATKTPSQQQQQHRPAGSHAAAAAAATVAMPQTASAASSSVAVKKNMR
QAAPVVVARRRTTAVESGGVALASVWREVQGERDWEGMVEGTAEEELHPLLRGEIVRYGE
LVAATYKAFDLDAASKRYLNCKYGKARMLDEVGMAGAGYEVTRYIYAAPDLAAGPPCPSR
WIGYVAVATDEAVRRLGRRDIVVSFRGTVTGSEWVANMMSSLAPARFDPADPRPDVKVES
GFLSVYTSDDATCRFTCGSCRNQLLSEVTRLIAKHKHEDVSVTLAGHSMGSSLALLLGYD
LAELGLNRDARGRAVPITVFSFAGPRVGNTAFKDRCDELGVKVLRVVNVNDPITKLPGIF
LNENSRVLGGKLELPWSSSCYTHVGVELALDFFKARDPACVHDLEAYLGLLKCPKVTKVM
KEGEDLFSKAKKIVLEQSFDTWRWQMAAIQVGGLVQALGM

Transcript Sequence

Transcript ID

Os11t0299300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:11110526:11112183:-1 gene:Os11g0299300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Lipase, class 3 family protein. (Os11t0299300-01)
Sequence

AACCCCAACCTCCGCAGCAAGCTCCACCACTTTGCTTGCTGCTGCTCGAGCGCTCGATCG
GTCTCCGCTCCAATGGCGATACACCTGACCAACCCTCCTCCGGGGCTCTACGCCACCAAG
ACACCCTCGCAGCAGCAGCAGCAGCACAGGCCCGCGGGTAGCCATGCCGCTGCGGCGGCG
GCGGCGACGGTGGCGATGCCGCAGACGGCGTCCGCGGCGTCGTCGAGCGTGGCGGTGAAG
AAGAACATGAGGCAGGCTGCGCCGGTGGTGGTGGCGAGGAGGAGGACGACAGCGGTGGAG
AGTGGCGGAGTGGCGTTGGCGAGCGTGTGGAGGGAGGTGCAGGGGGAGAGGGATTGGGAG
GGCATGGTGGAGGGCACGGCCGAGGAGGAGCTGCACCCGCTCCTCCGCGGCGAGATCGTC
CGGTACGGCGAGCTGGTGGCGGCGACGTACAAGGCGTTCGACCTCGACGCCGCGTCAAAG
CGCTACCTCAACTGCAAGTACGGCAAGGCCCGGATGCTCGACGAGGTCGGCATGGCCGGC
GCAGGGTACGAGGTCACGAGGTACATCTACGCCGCGCCCGACCTCGCCGCCGGCCCGCCG
TGCCCGAGCCGGTGGATCGGGTACGTCGCCGTGGCCACGGACGAGGCGGTGCGCCGCCTC
GGCCGCCGCGACATCGTCGTGTCGTTCCGCGGCACGGTCACCGGGTCCGAGTGGGTGGCC
AACATGATGAGCTCGCTGGCGCCGGCGAGGTTCGACCCGGCCGACCCGCGCCCCGACGTG
AAGGTCGAGTCGGGCTTCCTCTCCGTCTACACCTCCGACGACGCCACCTGCCGCTTCACC
TGCGGCAGCTGCCGGAACCAGCTCCTCTCCGAGGTGACCCGCCTCATCGCCAAGCACAAG
CACGAGGACGTCAGCGTCACCCTCGCCGGCCACAGCATGGGCAGCTCGCTGGCGCTGCTA
CTAGGCTATGACCTCGCCGAGCTTGGCCTCAACCGGGACGCCCGCGGCCGCGCCGTGCCG
ATCACCGTCTTCTCCTTCGCCGGCCCTCGTGTCGGGAACACGGCGTTCAAGGACAGGTGC
GACGAGCTCGGCGTCAAGGTGCTCAGGGTGGTAAATGTGAACGACCCCATCACCAAGCTC
CCCGGCATCTTCCTGAACGAGAATTCTAGGGTTTTGGGAGGCAAGCTGGAGCTGCCATGG
AGTAGCTCATGCTACACACATGTGGGAGTGGAGCTTGCCCTAGACTTCTTCAAGGCGAGA
GACCCAGCTTGTGTGCATGACTTGGAAGCATACTTAGGGTTGCTCAAGTGCCCTAAGGTG
ACAAAAGTGATGAAAGAAGGGGAGGATCTCTTTAGCAAGGCCAAGAAAATTGTTCTTGAG
CAAAGTTTTGACACTTGGAGGTGGCAAATGGCTGCAATTCAAGTTGGTGGCTTGGTACAA
GCCCTAGGAATGTAGGCCTCATACGGGGTTTTGTTTTTGTTTCCCACGATTTTTGAGGGA
AATGAAGGCTCACATACCCTTGTAAATTGAAAATTTTTTGTGGGGGTAAATCAGGTAGAT
CGAAGACATATATAGTGGAAAACATACAGAATATATAGGACATTGTTCATGAATGTAAGT
TAACCAATTGAACACAACAAAGTATACTGATTATACTG