Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0297300-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:10935559:10939478:1 gene:Os11g0297300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Beta-D-xylosidase. (Os11t0297300-01)
Sequence

ATGGCGGTCTCCACCTCCAGGCGCGGCGGCGGCGTGCTTGCGGCGGTGGTGACGGCGGTG
GCGGCGCTGGCGATGCTGGGCGGGGTGGCGTGGGGCGGCAACCCGGGGTTCACGTGCGGG
CCGGCGTCGGCGCAGAAGGGGTTCGCGTTCTGCAACGCGGCGCTGCCGGCGGAGCAGCGG
GCGGCGGACCTGGTGGCGAGGCTGACGACGGCGGAGAAGGTGGGGCAGCTCGGGGACCAG
GCGCCCGGGGTGCCGAGGCTGGGGATCCCGGTGTACAAGTGGTGGTCGGAGGCGCTGCAC
GGGCTGGCCATCTCCGGGAAGGGCATCCACTTCGGCAACGGCCCCGCGCGCACCGCCACC
AGCTTCCCGCAGGTCATCCACACCGCCGCCGCCTTCGACGACGGCCTCTGGTTCCGCATC
GGCCAGGCGATCGGCAAAGAGGGTCGGGCGTTCTACAACCTGGGGCAAGCAGAGGGTCTG
GCCATGTGGTCCCCCAACGTGAACATCTTTAGGGACCCACGGTGGGGCCGTGGCCAGGAG
ACCCCCGGCGAGGACCCCGCCACGGCGAGCAAGTACGGCGCCGCCTTCGTCAAGGGCCTG
CAGGGGAGCTCGTTGACAAACCTCCAGACCTCCGCGTGCTGCAAGCACATCACCGCCTAC
GACATCGAGGAGTGGAAGGGCGTCTCACGCTACAACTTCAATGCAAAGGTGACACCGCAA
GATCTAGCGGACACGTACAACCCGCCGTTTAGGAGCTGTGTGGTGGATGGGAAGGCGAGC
TGCATCATGTGTGCCTACACCCTCATCAATGGCGTCCCGGCGTGTGCTAGTTCTGACCTC
CTCACCAAGACCGTCAGGGGAGAATGGAAGTTAGATGGTTACACGGCGTCGGACTGCGAC
GCGGTCGCCATCCTTCACAAATCGGAACACTTCACGAGGACGGCGGAGGAAGCCGTGGCC
GTCGCCCTCAAGGCCGGGTTGGACATAAACTGCGGCGTGTACATGCAGCAGAACGCGGCG
TCGGCGCTGCAGCAGGGGAAGATGACGGAGAAGGACGTGGACAAGGCCCTCAAGAACCTC
TTCGCCATCCGGATGCGGCTGGGCCACTTCGACGGCGACCCAAGGGGCAACAAGCTGTAC
GGCCGCCTCAGCGCCGCCGACGTCTGCACGCCGGTGCACAAGGCCCTCGCCCTCGAGGCC
GCCAGGCGCGGCGTCGTCCTGCTCAAGAACGACGCCCGCCTCCTCCCGCTCCGCGCCCCC
ACCGTCGCCTCCGCTGCCGTCATCGGCCACAACGCCAACGACATCCTCGCCCTCCTCGGC
AACTACTACGGCCTCCCCTGCGAGACCACCACGCCGTTCGGAGGCATCCAGAAGTACGTC
AAGAGCGCCAAGTTCCTCCCCGGCTGCAGCTCCGCCGCCTGCGACGTCGCCGCCACCGAC
CAGGCCACCGCGCTGGCCAAGTCCTCCGACTACGTCTTCCTCGTCATGGGGCTCAGCCAG
AAGCAGGAGCAGGAAGGCCTCGACAGGACGAGCCTGCTGCTCCCCGGCAAGCAGCAGGCC
CTCATCACCGCCGTCGCCACCGCGTCGAAGCGCCCGGTCATCCTCATCCTCCTCACCGGC
GGCCCGGTGGACATCACGTTCGCGCAGACCAACCCCAAGATCGGCGCCATCCTGTGGGCG
GGGTACCCCGGCCAGGCCGGCGGTCAGGCCATCGCCGACGTGCTCTTCGGCGAGTTCAAC
CCCAGCGGCAAGCTGCCGGTGACATGGTACCCGGAGGAGTTCACCAAGTTCACCATGACC
GACATGCGGATGCGCCCCGACCCGGCCACCGGCTACCCCGGCCGGAGCTACCGATTCTAC
AAGGGCAAGACCGTCTACAAGTTCGGGTACGGCCTCAGCTACTCCAAGTTCGCTTGCCGC
ATCGTCTCCGGCGCCGGCAACTCGTCATCCTACGGCAAGGCGGCGCTCGCTGGCCTTAGG
GCAGCAACCACACCAGAAGGCGACGCCGTCTACCGCGTCGACGAGATCGGCGACGACCGG
TGCGAGCGGCTCAGGTTCCCGGTCATGGTGGAGGTGCAGAACCATGGCCCCATGGATGGC
AAGCACACCGTGCTGATGTTCGTCCGGTGGTCGAGCACGGATGGCGGCCGGCCGGTGAGG
CAGCTGATCGGGTTCAGGAACCAGCATCTCAAGGTAGGGGAGAAGAAGAAGTTGAAGATG
GAGATCAGCCCATGCGAGCACCTGAGCAGGGCGAGGGTGGACGGCGAGAAGGTGATCGAC
AGAGGATCGCATTTCCTCATGGTTGAGGAGGATGAGTTGGAGATTAGGTTCCAGGATTGA

Peptide Sequence

PEP ID

Os11t0297300-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:10935559:10939478:1 gene:Os11g0297300 transcript:Os11t0297300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Beta-D-xylosidase. (Os11t0297300-01)
Sequence

MAVSTSRRGGGVLAAVVTAVAALAMLGGVAWGGNPGFTCGPASAQKGFAFCNAALPAEQR
AADLVARLTTAEKVGQLGDQAPGVPRLGIPVYKWWSEALHGLAISGKGIHFGNGPARTAT
SFPQVIHTAAAFDDGLWFRIGQAIGKEGRAFYNLGQAEGLAMWSPNVNIFRDPRWGRGQE
TPGEDPATASKYGAAFVKGLQGSSLTNLQTSACCKHITAYDIEEWKGVSRYNFNAKVTPQ
DLADTYNPPFRSCVVDGKASCIMCAYTLINGVPACASSDLLTKTVRGEWKLDGYTASDCD
AVAILHKSEHFTRTAEEAVAVALKAGLDINCGVYMQQNAASALQQGKMTEKDVDKALKNL
FAIRMRLGHFDGDPRGNKLYGRLSAADVCTPVHKALALEAARRGVVLLKNDARLLPLRAP
TVASAAVIGHNANDILALLGNYYGLPCETTTPFGGIQKYVKSAKFLPGCSSAACDVAATD
QATALAKSSDYVFLVMGLSQKQEQEGLDRTSLLLPGKQQALITAVATASKRPVILILLTG
GPVDITFAQTNPKIGAILWAGYPGQAGGQAIADVLFGEFNPSGKLPVTWYPEEFTKFTMT
DMRMRPDPATGYPGRSYRFYKGKTVYKFGYGLSYSKFACRIVSGAGNSSSYGKAALAGLR
AATTPEGDAVYRVDEIGDDRCERLRFPVMVEVQNHGPMDGKHTVLMFVRWSSTDGGRPVR
QLIGFRNQHLKVGEKKKLKMEISPCEHLSRARVDGEKVIDRGSHFLMVEEDELEIRFQD

Transcript Sequence

Transcript ID

Os11t0297300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:10935559:10939478:1 gene:Os11g0297300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Beta-D-xylosidase. (Os11t0297300-01)
Sequence

ACTCGCATCGCATCGACCTCCTCTCGCCTTCTACGTACCTTGCCAATGGCGGTCTCCACC
TCCAGGCGCGGCGGCGGCGTGCTTGCGGCGGTGGTGACGGCGGTGGCGGCGCTGGCGATG
CTGGGCGGGGTGGCGTGGGGCGGCAACCCGGGGTTCACGTGCGGGCCGGCGTCGGCGCAG
AAGGGGTTCGCGTTCTGCAACGCGGCGCTGCCGGCGGAGCAGCGGGCGGCGGACCTGGTG
GCGAGGCTGACGACGGCGGAGAAGGTGGGGCAGCTCGGGGACCAGGCGCCCGGGGTGCCG
AGGCTGGGGATCCCGGTGTACAAGTGGTGGTCGGAGGCGCTGCACGGGCTGGCCATCTCC
GGGAAGGGCATCCACTTCGGCAACGGCCCCGCGCGCACCGCCACCAGCTTCCCGCAGGTC
ATCCACACCGCCGCCGCCTTCGACGACGGCCTCTGGTTCCGCATCGGCCAGGCGATCGGC
AAAGAGGGTCGGGCGTTCTACAACCTGGGGCAAGCAGAGGGTCTGGCCATGTGGTCCCCC
AACGTGAACATCTTTAGGGACCCACGGTGGGGCCGTGGCCAGGAGACCCCCGGCGAGGAC
CCCGCCACGGCGAGCAAGTACGGCGCCGCCTTCGTCAAGGGCCTGCAGGGGAGCTCGTTG
ACAAACCTCCAGACCTCCGCGTGCTGCAAGCACATCACCGCCTACGACATCGAGGAGTGG
AAGGGCGTCTCACGCTACAACTTCAATGCAAAGGTGACACCGCAAGATCTAGCGGACACG
TACAACCCGCCGTTTAGGAGCTGTGTGGTGGATGGGAAGGCGAGCTGCATCATGTGTGCC
TACACCCTCATCAATGGCGTCCCGGCGTGTGCTAGTTCTGACCTCCTCACCAAGACCGTC
AGGGGAGAATGGAAGTTAGATGGTTACACGGCGTCGGACTGCGACGCGGTCGCCATCCTT
CACAAATCGGAACACTTCACGAGGACGGCGGAGGAAGCCGTGGCCGTCGCCCTCAAGGCC
GGGTTGGACATAAACTGCGGCGTGTACATGCAGCAGAACGCGGCGTCGGCGCTGCAGCAG
GGGAAGATGACGGAGAAGGACGTGGACAAGGCCCTCAAGAACCTCTTCGCCATCCGGATG
CGGCTGGGCCACTTCGACGGCGACCCAAGGGGCAACAAGCTGTACGGCCGCCTCAGCGCC
GCCGACGTCTGCACGCCGGTGCACAAGGCCCTCGCCCTCGAGGCCGCCAGGCGCGGCGTC
GTCCTGCTCAAGAACGACGCCCGCCTCCTCCCGCTCCGCGCCCCCACCGTCGCCTCCGCT
GCCGTCATCGGCCACAACGCCAACGACATCCTCGCCCTCCTCGGCAACTACTACGGCCTC
CCCTGCGAGACCACCACGCCGTTCGGAGGCATCCAGAAGTACGTCAAGAGCGCCAAGTTC
CTCCCCGGCTGCAGCTCCGCCGCCTGCGACGTCGCCGCCACCGACCAGGCCACCGCGCTG
GCCAAGTCCTCCGACTACGTCTTCCTCGTCATGGGGCTCAGCCAGAAGCAGGAGCAGGAA
GGCCTCGACAGGACGAGCCTGCTGCTCCCCGGCAAGCAGCAGGCCCTCATCACCGCCGTC
GCCACCGCGTCGAAGCGCCCGGTCATCCTCATCCTCCTCACCGGCGGCCCGGTGGACATC
ACGTTCGCGCAGACCAACCCCAAGATCGGCGCCATCCTGTGGGCGGGGTACCCCGGCCAG
GCCGGCGGTCAGGCCATCGCCGACGTGCTCTTCGGCGAGTTCAACCCCAGCGGCAAGCTG
CCGGTGACATGGTACCCGGAGGAGTTCACCAAGTTCACCATGACCGACATGCGGATGCGC
CCCGACCCGGCCACCGGCTACCCCGGCCGGAGCTACCGATTCTACAAGGGCAAGACCGTC
TACAAGTTCGGGTACGGCCTCAGCTACTCCAAGTTCGCTTGCCGCATCGTCTCCGGCGCC
GGCAACTCGTCATCCTACGGCAAGGCGGCGCTCGCTGGCCTTAGGGCAGCAACCACACCA
GAAGGCGACGCCGTCTACCGCGTCGACGAGATCGGCGACGACCGGTGCGAGCGGCTCAGG
TTCCCGGTCATGGTGGAGGTGCAGAACCATGGCCCCATGGATGGCAAGCACACCGTGCTG
ATGTTCGTCCGGTGGTCGAGCACGGATGGCGGCCGGCCGGTGAGGCAGCTGATCGGGTTC
AGGAACCAGCATCTCAAGGTAGGGGAGAAGAAGAAGTTGAAGATGGAGATCAGCCCATGC
GAGCACCTGAGCAGGGCGAGGGTGGACGGCGAGAAGGTGATCGACAGAGGATCGCATTTC
CTCATGGTTGAGGAGGATGAGTTGGAGATTAGGTTCCAGGATTGAGTTTTAGATGGAAGA
TTATTTCCTTGTTTTTTAAATTTTGGTTTTGTTTATGTCTTTTGAGATGATACATAAAAG
GAGATCCAATGGATTGATATTAAATTAATAGAGAAGGAAAAGTTCTTTTGTCGG