Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0293900-02
CDS Infomation

cds chromosome:IRGSP-1.0:11:10738914:10747453:-1 gene:Os11g0293900 gene_biotype:protein_coding transcript_biotype:protein_coding description:UBX domain containing protein. (Os11t0293900-01);Similar to UBX domain containing protein, expressed. (Os11t0293900-02)
Sequence

ATGGAGAGGGCACTTGATTCCTTGACGTACAAAGGCTCCATTCCAGACGCTATCCTTCAG
TCAAGAAGGGATAACAAACTCTTTGTAGTGTACATATCAGGTGAAGATGAGACTTCGAGT
AGTTTGGAACAGTCGACACTTGTTAATGAAAGTGTGGCTGAAGTGATAGGCAACTGTTGC
GTATTCCTGCATCTAAAACAAGGCAACGTCGATGCATCCCAATTTTCAGCTATATATCCA
CAGAAGGCTATCCCAAGTATATCTGTCATTGGACAGAATGGTGTTATGCTATGGTGTCAT
GAGGGATACATCAGCTCGAAAGATCTGAAAGAAAATATTGAGAAAGCTTGGGCTACCCTT
CACCTGCAGGGTACAGCAGCAGCCTTTCTGACTGCATCACTTGCTTCAAGAATGACTGAA
CCTGTGAATACCACCCCGACCACTCTACCTACTCAAGGAGGCTCATCTGCTGCAGAGAAT
CCCTCTACTTCATCAAATCAATCTACAGGAACTTCTGGAGCCAGTGGGTTTGCTAATCCT
ACTGATTCGGTGGCACAGCCACCTAGAAGCACAAGCCGTGATGAAACTCCCAGCATAAGT
GAAAAAGAATCCTCAAATTTGGATTCAAGTCCAGGTAATAGAACTGTTCAAGAAAGGCCA
GATTCAGATAGTGCGCAAGTTAAAGGTTCTTTGCCTGATCATCCAAGGAGCTCAAATATA
GAAGGTTGTGCAAATCCAGTTCAATCAGGCAATACAGCATCACTAAAACAGAAAAATAAA
GTGGATGATGGTTTCACCAAAGTTTCCTCAGAGTCAGTTCCTACCAGAGTAGCTAGTAGA
GGTAAATCGTCAAAGGTAGCTGTGGATCAAGACAAGGCAACAACCACTAGCACCCCTATT
GAACCTGCCCCTGTGAGGTCAAATGATATTCAGCTGGTCGTTCGCATTCCTGATGGACCT
AGTCTGCAGATTAAACTGACAAAAGATGATAACTTAAGGAAGGTGAAGAATTTTGTGGAT
GAAAACCGTGCTAATGGGGCTGGATCTTACGATCTTGCTATGCTTTATCCAAGAAAAGTT
TTCACTGAACAAGACATGGAAGCCACGTTGCATGAACTGGGTATTGAAACCCGGCAGGCT
CTCACTATTGTTCCACATCATAAAACCATTCGAGCAGCAAAGCGCCAATCATCATCATCA
CCCCATGAAGGGGATAACAATATGGATGCAGACAGCTCAGGTGGTTCGGGATATTTCGGT
TATCTGAGAACTGCCCTATCGTTTGTGAATCCACTGTCCTACTTGAGAGCAAATGCTGCT
CCATCAAACCCTGATCAGTTGGCAAATCAGGGGTCGCCACAGTACAGACCGAGCACTGGA
CCCTGGAATCGTCCTGGAGAGGACACTGCTTCGG

Peptide Sequence

PEP ID

Os11t0293900-02
PEP Infomation

pep chromosome:IRGSP-1.0:11:10738914:10747453:-1 gene:Os11g0293900 transcript:Os11t0293900-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:UBX domain containing protein. (Os11t0293900-01);Similar to UBX domain containing protein, expressed. (Os11t0293900-02)
Sequence

MERALDSLTYKGSIPDAILQSRRDNKLFVVYISGEDETSSSLEQSTLVNESVAEVIGNCC
VFLHLKQGNVDASQFSAIYPQKAIPSISVIGQNGVMLWCHEGYISSKDLKENIEKAWATL
HLQGTAAAFLTASLASRMTEPVNTTPTTLPTQGGSSAAENPSTSSNQSTGTSGASGFANP
TDSVAQPPRSTSRDETPSISEKESSNLDSSPGNRTVQERPDSDSAQVKGSLPDHPRSSNI
EGCANPVQSGNTASLKQKNKVDDGFTKVSSESVPTRVASRGKSSKVAVDQDKATTTSTPI
EPAPVRSNDIQLVVRIPDGPSLQIKLTKDDNLRKVKNFVDENRANGAGSYDLAMLYPRKV
FTEQDMEATLHELGIETRQALTIVPHHKTIRAAKRQSSSSPHEGDNNMDADSSGGSGYFG
YLRTALSFVNPLSYLRANAAPSNPDQLANQGSPQYRPSTGPWNRPGEDTAS

Transcript Sequence

Transcript ID

Os11t0293900-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:10738914:10747453:-1 gene:Os11g0293900 gene_biotype:protein_coding transcript_biotype:protein_coding description:UBX domain containing protein. (Os11t0293900-01);Similar to UBX domain containing protein, expressed. (Os11t0293900-02)
Sequence

CTCCCCCCCATCACCACCACTCCTCCGCCGCGTCGCCGTCGCCGTCACCGACAAGCCTCG
CCTCTCCTCGCCGGTTCGCCGTCGCGGCCGCCTCCTTTGTCCGCTCCAGCGCCCTCCTCG
GCCCGGATCGGCCCTTCCCCAGATGGAGAGGGCACTTGATTCCTTGACGTACAAAGGCTC
CATTCCAGACGCTATCCTTCAGTCAAGAAGGGATAACAAACTCTTTGTAGTGTACATATC
AGGTGAAGATGAGACTTCGAGTAGTTTGGAACAGTCGACACTTGTTAATGAAAGTGTGGC
TGAAGTGATAGGCAACTGTTGCGTATTCCTGCATCTAAAACAAGGCAACGTCGATGCATC
CCAATTTTCAGCTATATATCCACAGAAGGCTATCCCAAGTATATCTGTCATTGGACAGAA
TGGTGTTATGCTATGGTGTCATGAGGGATACATCAGCTCGAAAGATCTGAAAGAAAATAT
TGAGAAAGCTTGGGCTACCCTTCACCTGCAGGGTACAGCAGCAGCCTTTCTGACTGCATC
ACTTGCTTCAAGAATGACTGAACCTGTGAATACCACCCCGACCACTCTACCTACTCAAGG
AGGCTCATCTGCTGCAGAGAATCCCTCTACTTCATCAAATCAATCTACAGGAACTTCTGG
AGCCAGTGGGTTTGCTAATCCTACTGATTCGGTGGCACAGCCACCTAGAAGCACAAGCCG
TGATGAAACTCCCAGCATAAGTGAAAAAGAATCCTCAAATTTGGATTCAAGTCCAGGTAA
TAGAACTGTTCAAGAAAGGCCAGATTCAGATAGTGCGCAAGTTAAAGGTTCTTTGCCTGA
TCATCCAAGGAGCTCAAATATAGAAGGTTGTGCAAATCCAGTTCAATCAGGCAATACAGC
ATCACTAAAACAGAAAAATAAAGTGGATGATGGTTTCACCAAAGTTTCCTCAGAGTCAGT
TCCTACCAGAGTAGCTAGTAGAGGTAAATCGTCAAAGGTAGCTGTGGATCAAGACAAGGC
AACAACCACTAGCACCCCTATTGAACCTGCCCCTGTGAGGTCAAATGATATTCAGCTGGT
CGTTCGCATTCCTGATGGACCTAGTCTGCAGATTAAACTGACAAAAGATGATAACTTAAG
GAAGGTGAAGAATTTTGTGGATGAAAACCGTGCTAATGGGGCTGGATCTTACGATCTTGC
TATGCTTTATCCAAGAAAAGTTTTCACTGAACAAGACATGGAAGCCACGTTGCATGAACT
GGGTATTGAAACCCGGCAGGCTCTCACTATTGTTCCACATCATAAAACCATTCGAGCAGC
AAAGCGCCAATCATCATCATCACCCCATGAAGGGGATAACAATATGGATGCAGACAGCTC
AGGTGGTTCGGGATATTTCGGTTATCTGAGAACTGCCCTATCGTTTGTGAATCCACTGTC
CTACTTGAGAGCAAATGCTGCTCCATCAAACCCTGATCAGTTGGCAAATCAGGGGTCGCC
ACAGTACAGACCGAGCACTGGACCCTGGAATCGTCCTGGAGAGGACACTGCTTCGG