Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0293300-01
CDS Infomation	cds chromosome:IRGSP-1.0:11:10691940:10698318:1 gene:Os11g0293300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Survival motor neuron interacting protein 1 family protein. (Os11t0293300-01)
Sequence	ATGGCGGACAACGCCGCCGCCGCCGCCGACAGCGCGGCGCGGACGAGGTACGCGAGGGGC CAGCTCGAGGCGCTGAGGGCCGCCCCGTCGGAGGAGGCGCAGGCGCGGCTATGGGCCGAG GTGTCCGCCGCCCTCGCCGCCGCCGGCTTCTCCGGCGAGTACGACGGGCTGATGGACGCA GAGGATCCGTCGATTAGGAAGCCGGGGAGGAAGGGGAAGAAGGCCGCCGGGGGCGGGTGG AAGAGGCACGACGCGGCGGCGGCGACCCAATTCCTGGAAACGGATGAGGTTGGTGCCTGG AGGAATGGGGATTCAGGGGTCCGCTACGAGCATTACGTGGATGAGCCTCGTTCCGTGCTT CAAGTGATTGAGGAGCCATTTGTTCAGGGTGGAAATGCGGAGTACGAAGATGCTGACAGC GATGATGATTATGATGGAATTTTGAAGCCCGCCTTCGCAGTTGATGGGGATCCCGATTTC GAGTCGGGTGAGCCGCTCGATGGCTTTGAGTACCTTCGGCGTGTCAGGTGGGAAGCTAAC CAAATTCCCAGAGTGAAGGTGGCGAAGATAGATTTGAATACGGCTAGAAATGAACAGACG CCTTACATGCCAGAAATTCCTGATATAGCAAAGTGTTCTCCTGATTTGTGTGCATCAAAG CCCTGGGAAGATACATTTATTACTTATTTCTCTGAGACAAGACTGGCATTTTCAGAGCTT GACAGCTCAGATGGACCATCGGTTTCTGGTGGAACAAAAAACTTGTTGAAACCAAGCAAC AGATCTGAGCCACAGACTGACCCAACACTGACCATGATTCGCAACATGGATGCTGTCTCA AGAGCTGCAACACTACGGAACTACATCGATATGATTCAAAGCTTGGATAAGCTATCAAGG AATGACTGCCTGTGGCTGTTTTCACTGTGTGTCGCCGTGGACACTCCCTTGGACGCCGAG ACATGTGCTTCGCTGAGGTCGCTGCTGCGCAAGTGCGCAAATGTCCTTGCCGCCAAGTTG GAGATGGATGATGAAGTCGCTATGCTGAACATACTGATCACAATCTCTGGACGGTTCTTT GGACAGTATGATAATCATTAG

Peptide Sequence

PEP ID	Os11t0293300-01
PEP Infomation	pep chromosome:IRGSP-1.0:11:10691940:10698318:1 gene:Os11g0293300 transcript:Os11t0293300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Survival motor neuron interacting protein 1 family protein. (Os11t0293300-01)
Sequence	MADNAAAAADSAARTRYARGQLEALRAAPSEEAQARLWAEVSAALAAAGFSGEYDGLMDA EDPSIRKPGRKGKKAAGGGWKRHDAAAATQFLETDEVGAWRNGDSGVRYEHYVDEPRSVL QVIEEPFVQGGNAEYEDADSDDDYDGILKPAFAVDGDPDFESGEPLDGFEYLRRVRWEAN QIPRVKVAKIDLNTARNEQTPYMPEIPDIAKCSPDLCASKPWEDTFITYFSETRLAFSEL DSSDGPSVSGGTKNLLKPSNRSEPQTDPTLTMIRNMDAVSRAATLRNYIDMIQSLDKLSR NDCLWLFSLCVAVDTPLDAETCASLRSLLRKCANVLAAKLEMDDEVAMLNILITISGRFF GQYDNH

Transcript Sequence

Transcript ID	Os11t0293300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:10691940:10698318:1 gene:Os11g0293300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Survival motor neuron interacting protein 1 family protein. (Os11t0293300-01)
Sequence	TTCTCGAACCTTCGTCCCCTTTCCCCTCTCCCATCCCCATGGCGGACAACGCCGCCGCCG CCGCCGACAGCGCGGCGCGGACGAGGTACGCGAGGGGCCAGCTCGAGGCGCTGAGGGCCG CCCCGTCGGAGGAGGCGCAGGCGCGGCTATGGGCCGAGGTGTCCGCCGCCCTCGCCGCCG CCGGCTTCTCCGGCGAGTACGACGGGCTGATGGACGCAGAGGATCCGTCGATTAGGAAGC CGGGGAGGAAGGGGAAGAAGGCCGCCGGGGGCGGGTGGAAGAGGCACGACGCGGCGGCGG CGACCCAATTCCTGGAAACGGATGAGGTTGGTGCCTGGAGGAATGGGGATTCAGGGGTCC GCTACGAGCATTACGTGGATGAGCCTCGTTCCGTGCTTCAAGTGATTGAGGAGCCATTTG TTCAGGGTGGAAATGCGGAGTACGAAGATGCTGACAGCGATGATGATTATGATGGAATTT TGAAGCCCGCCTTCGCAGTTGATGGGGATCCCGATTTCGAGTCGGGTGAGCCGCTCGATG GCTTTGAGTACCTTCGGCGTGTCAGGTGGGAAGCTAACCAAATTCCCAGAGTGAAGGTGG CGAAGATAGATTTGAATACGGCTAGAAATGAACAGACGCCTTACATGCCAGAAATTCCTG ATATAGCAAAGTGTTCTCCTGATTTGTGTGCATCAAAGCCCTGGGAAGATACATTTATTA CTTATTTCTCTGAGACAAGACTGGCATTTTCAGAGCTTGACAGCTCAGATGGACCATCGG TTTCTGGTGGAACAAAAAACTTGTTGAAACCAAGCAACAGATCTGAGCCACAGACTGACC CAACACTGACCATGATTCGCAACATGGATGCTGTCTCAAGAGCTGCAACACTACGGAACT ACATCGATATGATTCAAAGCTTGGATAAGCTATCAAGGAATGACTGCCTGTGGCTGTTTT CACTGTGTGTCGCCGTGGACACTCCCTTGGACGCCGAGACATGTGCTTCGCTGAGGTCGC TGCTGCGCAAGTGCGCAAATGTCCTTGCCGCCAAGTTGGAGATGGATGATGAAGTCGCTA TGCTGAACATACTGATCACAATCTCTGGACGGTTCTTTGGACAGTATGATAATCATTAGG ATAGCAAAGGTACCCCATCTTGTGATATCTCCCTTTTGTTAGTATGCCTAGACGAAGTTT TGTCTCCTTACTCCTTAGACTGCCTATATAGTGATGGAATGTGCACAATCAGTTCTCTGA AATTCTGGATGCCTTCATCACTATAATGGCTAATATAGCGAGGCACCTTGAGATGGGCGT CGTAAGTTCAAAGTTCACGCCTACGGTATGGTTTTCGAAACCTAACATTATCTTCTGTAG TGACTATGAATTTTGAAATTAAACAACTGACTTCCTGCT