Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0275400-01
CDS Infomation	cds chromosome:IRGSP-1.0:11:9768071:9771637:1 gene:Os11g0275400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os11t0275400-01)
Sequence	ATGGACGACAAGCTCTACCCGCCTCGAGGCCCAGCGCGAAGAAATCAAGTCCCGAGCCCC GAGCGAGCAAGATTAATCCCAAGGTGCGGGTGCAGATTATCTTCCAAACATGTTTGGGGC TCTACTGGGACTCCATGGCACATGTTAAGTGCTCTGGATTGCTTGCTATTTTCTGCTCCT CAATCGTGCTCATTGGCTCACACATGGACGGCTTCAGTTATGCACAACCGTCTTGTAGGT GGCTGTTTCAGCAGTTTGTCAGCAGCAGTAGCATCGGCTATTCGTGTACCTGTTGCAAGC TATGGGACTTCTGCAGCACAAAGCACATCAAAGGACCAGCATGGCAGCAACATCAACAGT GCGCTAAAAGTTTTGAATCTTGTACCAAGAAAGGCTGACTATGACAAAGTGGGAGGTCCA TGCCATCACCGACTAATCCATGACTGCATGAATGACATCTTGGGGGTTCAATCAAATCAT ACTATACACAAGGGAAATGGTGTCACTTTTAACTCATGCAGCAATCCTGCACAGGCTAAA TTTGATAGCTTTGTTTCAAATAATGGCTCGGCTTTGTGTTCCAGGACTAGATTCATAAAG GAGGACATGTTTATGCTGATAATGGAGCTGCACAGGAAAGGAGAAACCAGTACTGATCAA TCTATTTTGGCAGCTGCCATGAGTTCCTGTGCTGATAGGCAAATGTTCACCCAAGGCACA CAGCTTCATGGTCTATTGGTTAAAGTTGGCTGTGATTCAACTGTCTTTATTGGCAGTTCA CTCATCACCTTATATTCGAGGTGTAGCCAGTTGGAAAGTTCGTACTTGGTTTTCCAGACC ATGCCAACCAAAAACACAGTGTCATGGACAGCAATGATTTCTGGTTTTGCGCTTCATAAT CGGGTTGAGCCATGTCTCCATTTGTTTGCATCAATGATGCTTTCAAGTTGCAAGCCAAAT GACATCACATTTGCCACTCTTTTTAGTGTGTGCACTAAACATGCACTTCTAGCACTTGGT AGAAGTGTCCATGCTTTACAAATGAGAATGGGTTTCCATTCGTATGTGCATGTTTCCAAT GCCCTGCTGTCAATGTATGCAAAGTGTGGGTGTATTGATGAAGCCCAGTTCATATTTGGC TGCATTGCCTGTAAGGACCTTGTTTCGTGGAATGCCATTATCTTTGGATGTTCGCAGTAT GGTCTTGCTAAGCATTGCCTTGACTTGCTGAAAGAAATGGAGAGGCAACACATAGTACCT GATGCTCTCTCCTTCCTTGGTGTCCTTTCTTCATGCCGGCATGCACGCCTTGTGGAGGAA GGCCGACACTGCTTCAAGACAATGATTGAACATGGAATAAAACCAGGGCTCGATCACTAC TCATGTATGGTCGACCTTCTTGGGCGCGCAGGATTGCTTGAAGAAGCGTGGGATTTGATC CAAACAATGTCTATCCCTCCAAATGCCGTCATATGGGGCTCTCTGCTGGGTTCCTGTAGG GTGCATGGGAACATTTCGATCGGCATCCAGGCTGCAGAGCACCGTCTTAAACTTGAGCCA GGTTGTGCTGCAACTCATATACAACTAGCAAATCTGTATGCCACAATTGGTTGCTGGAGT GATGTGGCCAGAGTGAGGATGGCAATGAAGGCGAGAGGCCTAAAGACGAACATTGGGTGT AGCTGGATAGAAGTCGGTGATAAGGTTTATTCCTTCACGGCAGAGAACAGATCAAAGAGC CACCAAGTAAACAATGTCCTGGCTGTTCTTGATTGCTTGCAAGCTCACATGGAATGCAAG TATGATATGCTTACAGAAAGCCTGGAATAG

Peptide Sequence

PEP ID	Os11t0275400-01
PEP Infomation	pep chromosome:IRGSP-1.0:11:9768071:9771637:1 gene:Os11g0275400 transcript:Os11t0275400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os11t0275400-01)
Sequence	MDDKLYPPRGPARRNQVPSPERARLIPRCGCRLSSKHVWGSTGTPWHMLSALDCLLFSAP QSCSLAHTWTASVMHNRLVGGCFSSLSAAVASAIRVPVASYGTSAAQSTSKDQHGSNINS ALKVLNLVPRKADYDKVGGPCHHRLIHDCMNDILGVQSNHTIHKGNGVTFNSCSNPAQAK FDSFVSNNGSALCSRTRFIKEDMFMLIMELHRKGETSTDQSILAAAMSSCADRQMFTQGT QLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQTMPTKNTVSWTAMISGFALHN RVEPCLHLFASMMLSSCKPNDITFATLFSVCTKHALLALGRSVHALQMRMGFHSYVHVSN ALLSMYAKCGCIDEAQFIFGCIACKDLVSWNAIIFGCSQYGLAKHCLDLLKEMERQHIVP DALSFLGVLSSCRHARLVEEGRHCFKTMIEHGIKPGLDHYSCMVDLLGRAGLLEEAWDLI QTMSIPPNAVIWGSLLGSCRVHGNISIGIQAAEHRLKLEPGCAATHIQLANLYATIGCWS DVARVRMAMKARGLKTNIGCSWIEVGDKVYSFTAENRSKSHQVNNVLAVLDCLQAHMECK YDMLTESLE

Transcript Sequence

Transcript ID	Os11t0275400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:9768071:9771637:1 gene:Os11g0275400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os11t0275400-01)
Sequence	AATTCCCAAATTCCCTAACCTAACCCTAGCTTTGCAAGGAGACGGGCGGCGGGGGGCGCT GCGTGCGGCGTGCGGTGCGGCGGCGGGCGCGGTGTACGGCGGCGGCGAGCCGGCGACCGC GGGGCAGCCAGCCAGGCAGGGGCGGCTGCCGGCTGGACGCACTGGCGCAGCATCTCCTAG GGTGGCGGCGGAGCGGGCGCACGGCCGTGGAGGCGTCGACGCAGGAAGAGGACCACTCGG CTTGGCGCCAGGGCGCGGGGCAGCGGCTGACTCGTGAGGCAGCGGCGCGGCGCGGCCTGC GGCGACAGCGGCATTGCGGCGCGACGCGCGGCCTGCTGCGACAGCGGCAGTGCGGCCATG GACGACAAGCTCTACCCGCCTCGAGGCCCAGCGCGAAGAAATCAAGTCCCGAGCCCCGAG CGAGCAAGATTAATCCCAAGGTGCGGGTGCAGATTATCTTCCAAACATGTTTGGGGCTCT ACTGGGACTCCATGGCACATGTTAAGTGCTCTGGATTGCTTGCTATTTTCTGCTCCTCAA TCGTGCTCATTGGCTCACACATGGACGGCTTCAGTTATGCACAACCGTCTTGTAGGTGGC TGTTTCAGCAGTTTGTCAGCAGCAGTAGCATCGGCTATTCGTGTACCTGTTGCAAGCTAT GGGACTTCTGCAGCACAAAGCACATCAAAGGACCAGCATGGCAGCAACATCAACAGTGCG CTAAAAGTTTTGAATCTTGTACCAAGAAAGGCTGACTATGACAAAGTGGGAGGTCCATGC CATCACCGACTAATCCATGACTGCATGAATGACATCTTGGGGGTTCAATCAAATCATACT ATACACAAGGGAAATGGTGTCACTTTTAACTCATGCAGCAATCCTGCACAGGCTAAATTT GATAGCTTTGTTTCAAATAATGGCTCGGCTTTGTGTTCCAGGACTAGATTCATAAAGGAG GACATGTTTATGCTGATAATGGAGCTGCACAGGAAAGGAGAAACCAGTACTGATCAATCT ATTTTGGCAGCTGCCATGAGTTCCTGTGCTGATAGGCAAATGTTCACCCAAGGCACACAG CTTCATGGTCTATTGGTTAAAGTTGGCTGTGATTCAACTGTCTTTATTGGCAGTTCACTC ATCACCTTATATTCGAGGTGTAGCCAGTTGGAAAGTTCGTACTTGGTTTTCCAGACCATG CCAACCAAAAACACAGTGTCATGGACAGCAATGATTTCTGGTTTTGCGCTTCATAATCGG GTTGAGCCATGTCTCCATTTGTTTGCATCAATGATGCTTTCAAGTTGCAAGCCAAATGAC ATCACATTTGCCACTCTTTTTAGTGTGTGCACTAAACATGCACTTCTAGCACTTGGTAGA AGTGTCCATGCTTTACAAATGAGAATGGGTTTCCATTCGTATGTGCATGTTTCCAATGCC CTGCTGTCAATGTATGCAAAGTGTGGGTGTATTGATGAAGCCCAGTTCATATTTGGCTGC ATTGCCTGTAAGGACCTTGTTTCGTGGAATGCCATTATCTTTGGATGTTCGCAGTATGGT CTTGCTAAGCATTGCCTTGACTTGCTGAAAGAAATGGAGAGGCAACACATAGTACCTGAT GCTCTCTCCTTCCTTGGTGTCCTTTCTTCATGCCGGCATGCACGCCTTGTGGAGGAAGGC CGACACTGCTTCAAGACAATGATTGAACATGGAATAAAACCAGGGCTCGATCACTACTCA TGTATGGTCGACCTTCTTGGGCGCGCAGGATTGCTTGAAGAAGCGTGGGATTTGATCCAA ACAATGTCTATCCCTCCAAATGCCGTCATATGGGGCTCTCTGCTGGGTTCCTGTAGGGTG CATGGGAACATTTCGATCGGCATCCAGGCTGCAGAGCACCGTCTTAAACTTGAGCCAGGT TGTGCTGCAACTCATATACAACTAGCAAATCTGTATGCCACAATTGGTTGCTGGAGTGAT GTGGCCAGAGTGAGGATGGCAATGAAGGCGAGAGGCCTAAAGACGAACATTGGGTGTAGC TGGATAGAAGTCGGTGATAAGGTTTATTCCTTCACGGCAGAGAACAGATCAAAGAGCCAC CAAGTAAACAATGTCCTGGCTGTTCTTGATTGCTTGCAAGCTCACATGGAATGCAAGTAT GATATGCTTACAGAAAGCCTGGAATAGTGGAGTGTGATGGCTGTGAACATGTCAAGACGA CTATAAACACTGTATATATTAAGAGGAATCCTACAGAAAATGGCAAGCATCACTCGCTAA AGATTAAGAAGATCCATTGATGCCGTTATAACACCTAAACATTATGTGTATGGACTGATT GGTATAAAGATCTGTATGGATTGACAAGACTCACGACCAACAAGACATGCAGGTACTGTA TTTTCCAAGTCTCTTCCAGTTTTGTTCCTTTCAATTTGTTCCTCATTTGCCTGGCGAAAT TTGTTCCTCGTTTGTCTAAGAAGTGTGGGGAATAAAGTATTCTTACACTCTGCCACC