Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0267400-01
CDS Infomation	cds chromosome:IRGSP-1.0:11:9193137:9198640:-1 gene:Os11g0267400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CLASS I CLP ATPASE C3 description:Similar to ClpC. (Os11t0267400-01)
Sequence	ATGGAGAGAACCCTACTGAACCCGCCGCCGTCTCTCCGATCGCCGGCATGCCGTACCACC ACCGCCACCAGGATCAGGCCCTCCTCCTCCATGGCTACTATGATCCCAACGCCTCCGCCG ATGCGGCACGCCCGCCTCGTCAAGGCATCGGCCGCGGGCCGGCGAGAGCTCCACGCTCCC CCGATCGCGCCGCCAATATTACTCGGCCTCCGTTCACCCGCGGCGGCGTCGTACGGGCGT GCGAGCGGCGGCGGCGGGAGGAGGAGGGGGGCGCGGGTGGTGGCGAGGATGGGGTTCGAC ATGTTCACGGACAAGGCGATCAAGGCGATCATGATGGCGCAGGAGGAGGCGCGGCGGCTG GGGCACCACGCCGCCGGCAGCGAGCAGCTCCTCCTCGGCGTCATCGGGGAGGGCACCGGC ATCGGCGCCAAGGTGCTCAGGGGCGCCGGGCTCAGCCTCAAGGCGGCGCGCGCCGAGGTG GAGAAGATGGCCGGGAGGGGCCCCGGCATGGTCCCCATGGAGATCAAGTTCACCCCCGCC GCCAAGAACGTCCTCCAGGCCTCCCAAGAAGAAGCGCACCAGCTAGGGCATAACTATGTT GGATCTGAACACCTCCTACTTGGGTTGCTCCGTGAGCATGGTGCCGCGCTTGTTGTGCTG AAGAACTTTCAGGCTGATCCCAGCAACATCCGCAGTGAGGTTATCCGAATGATCAGTGAC ACCTCTGAAGATCATCAACCTGTTAGTGCTGCAGTTGGGGGAGGAAGCAGTACAACTAAG ATACCCACACTTTTAGAGTATGGTACTAATCTGACAAAACTAGCAGAGGAGGGGAAGCTG GATCCTGTTGTCGGAAGGCAAAACCAGGTTGACCGTGTAGTGCAGATTCTCGGCAGGCGG ACCAAGAACAACCCCTGCCTGATTGGAGAGCCTGGAGTAGGGAAAACAGCGATCGCGGAA GGGCTCGCGCAGCGCATTGCTGCAGGAAATGTGCCTGAAACAATCGATGGGAAAACGGTT ATCACCCTTGATATGGGTCTACTTGTTGCTGGTACAAAATACCGTGGTGAGTTTGAGGAG AGATTGAAGAAGCTGATGGACGAAGTGAAGCAGAATGGTGAGATAATTCTCTTCCTTGAT GAAGTTCACACCCTGGTGGGTGCTGGAGCAGCTGAAGGGGCCATCGACGCTGCCAACATC CTGAAGCCAGCGCTAGCAAGAGGTGAACTACAGTGTATTGGAGCCACTACCATTGATGAA TACAGAAAGCACATTGAGAAAGACCCAGCACTGGAGAGGCGTTTTCAGCCTGTCAAGGTC CCTGAGCCAACTGTTGATGAGACCATAGGAATTCTCAAAGGTCTCCGGGAGCGATATGAG ATCCATCATAAGGTCCAGTATACTGATGAGTCGTTGATCGCAGCTGCTCGGCTCTCATAC CAGTACATCAGTGATCGTTTCCTCCCGGATAAAGCAATTGACTTGGTTGATGAAGCAGGT TCTCTTGTCAGGCTGCGAAATGCCCAGCTACCTGATGAAGCTAAAGAACTCGAGAAGAAG CTCAAGAAGATCATGGCAGAGAAGAGCGAAGCCATCCGAAGCCAAGACTTCGAGAAGGCG GGAGCGCTTCGCGGCGAGGAGGTGGAGCTCAAGTCGGAGATCATGTCGCTGGTCGACAAG AGCAAGGAGATGAGCAAGGCGGCGGTGGACTCCGGCGAGTCGCCGGGGCCGACGGTGACG GAGGCGGACGTCCAGCACATCGTCTCCAGCTGGACCGGCGTCCCCGTGGAGAAGGTCACC GTCGACGAGTCGAGCCGTCTCCTCGCCATGGAGTCGTCGCTGCACCGGCGCATCGTCGGC CAGGACGAGGCCGTGACGGCGATCAGCCGCGCCATCCGCCGCGCCCGCGTCGGGCTCCGC GACCCGCGCCGCCCGATCGCGAGCTTCATCTTCGCCGGGCCGACGGGGGTCGGCAAGTCG GAGCTCGCCAAGGCGCTGGCGGCGTACTACTACGGCTCGCCGGAGGCCATGGTGCGGCTC GACATGAGCGAGTTCATGGAGAAGCACACGGTGGCGAAGCTGGTGGGCTCGCCGCCGGGG TACGTCGGCTACGCCGAGGGCGGCCAGCTGACGGAGGCGATCCGGCGGCGCCCCTACGCC GTCGTGCTGTTCGACGAGGTCGAGAAGGCGCACCCCGACGTGTTCAACATGATGCTCCAG ATCCTCGACGATGGCCGGCTCACGGACAGCAAGGGGAGGACGGTGGATTTCAAGAACTCG CTCATCATCATGACATCCAACGTCGGCAGCGGCGTCATCGAGAAGGGCGGGAGGCAGCTC GGGTTCGCCGGCGATGGCAGCGGCGACGGCGGGTACGGGGTGATCAAGAACATGGTGGAG GAGGAGATGAAGCGCTACTTCAGGCCGGAGTTCCTGAACCGGCTGGACGAGATGATCGTG TTCCGGCAGCTGACGAAGCTGGAGGTGAAGGAGATCGCCGGGATCATGCTCGCCGAGGTC ACCGGGCGGATCGGCGGGAAGGGGATCGGGCTGCAGGTGACGGAGAGGTTCAAGGAGCTC GTCGTCGAGCAAGGCTTCGACCCGAGCTACGGCGCGCGGCCGCTGCGCCGGGCCATCATG CGGCTGCTGGAGGACACGCTCACGGACAAGATGCTCGCCGGGGAGATCTGCGCCGGCGAC TCGGTGATCGTCGACGCCGACGGTGACGGGAACGTCGTCGTGGTCGGCCGGCGCAGCGCC GGCTTGCCGGACCTGAAATCGCCGGCGTTTACTGTCTAG

Peptide Sequence

PEP ID	Os11t0267400-01
PEP Infomation	pep chromosome:IRGSP-1.0:11:9193137:9198640:-1 gene:Os11g0267400 transcript:Os11t0267400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CLASS I CLP ATPASE C3 description:Similar to ClpC. (Os11t0267400-01)
Sequence	MERTLLNPPPSLRSPACRTTTATRIRPSSSMATMIPTPPPMRHARLVKASAAGRRELHAP PIAPPILLGLRSPAAASYGRASGGGGRRRGARVVARMGFDMFTDKAIKAIMMAQEEARRL GHHAAGSEQLLLGVIGEGTGIGAKVLRGAGLSLKAARAEVEKMAGRGPGMVPMEIKFTPA AKNVLQASQEEAHQLGHNYVGSEHLLLGLLREHGAALVVLKNFQADPSNIRSEVIRMISD TSEDHQPVSAAVGGGSSTTKIPTLLEYGTNLTKLAEEGKLDPVVGRQNQVDRVVQILGRR TKNNPCLIGEPGVGKTAIAEGLAQRIAAGNVPETIDGKTVITLDMGLLVAGTKYRGEFEE RLKKLMDEVKQNGEIILFLDEVHTLVGAGAAEGAIDAANILKPALARGELQCIGATTIDE YRKHIEKDPALERRFQPVKVPEPTVDETIGILKGLRERYEIHHKVQYTDESLIAAARLSY QYISDRFLPDKAIDLVDEAGSLVRLRNAQLPDEAKELEKKLKKIMAEKSEAIRSQDFEKA GALRGEEVELKSEIMSLVDKSKEMSKAAVDSGESPGPTVTEADVQHIVSSWTGVPVEKVT VDESSRLLAMESSLHRRIVGQDEAVTAISRAIRRARVGLRDPRRPIASFIFAGPTGVGKS ELAKALAAYYYGSPEAMVRLDMSEFMEKHTVAKLVGSPPGYVGYAEGGQLTEAIRRRPYA VVLFDEVEKAHPDVFNMMLQILDDGRLTDSKGRTVDFKNSLIIMTSNVGSGVIEKGGRQL GFAGDGSGDGGYGVIKNMVEEEMKRYFRPEFLNRLDEMIVFRQLTKLEVKEIAGIMLAEV TGRIGGKGIGLQVTERFKELVVEQGFDPSYGARPLRRAIMRLLEDTLTDKMLAGEICAGD SVIVDADGDGNVVVVGRRSAGLPDLKSPAFTV

Transcript Sequence

Transcript ID	Os11t0267400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:9193137:9198640:-1 gene:Os11g0267400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CLASS I CLP ATPASE C3 description:Similar to ClpC. (Os11t0267400-01)
Sequence	GCCGCCACCCACGCGTGCGTACCTCTCTCCTCCGTGTCGCCGGCGAACCCGCCGCCGCCC CATCACCGGCGGCGACGTCCGCCCGGCCGCGCGCCGCCATTGCCCCGACCATCAACAGAT TGATCGAGGCGTAGAGTAGAAGCTTCTCCTCGGCGACCATGGAGAGAACCCTACTGAACC CGCCGCCGTCTCTCCGATCGCCGGCATGCCGTACCACCACCGCCACCAGGATCAGGCCCT CCTCCTCCATGGCTACTATGATCCCAACGCCTCCGCCGATGCGGCACGCCCGCCTCGTCA AGGCATCGGCCGCGGGCCGGCGAGAGCTCCACGCTCCCCCGATCGCGCCGCCAATATTAC TCGGCCTCCGTTCACCCGCGGCGGCGTCGTACGGGCGTGCGAGCGGCGGCGGCGGGAGGA GGAGGGGGGCGCGGGTGGTGGCGAGGATGGGGTTCGACATGTTCACGGACAAGGCGATCA AGGCGATCATGATGGCGCAGGAGGAGGCGCGGCGGCTGGGGCACCACGCCGCCGGCAGCG AGCAGCTCCTCCTCGGCGTCATCGGGGAGGGCACCGGCATCGGCGCCAAGGTGCTCAGGG GCGCCGGGCTCAGCCTCAAGGCGGCGCGCGCCGAGGTGGAGAAGATGGCCGGGAGGGGCC CCGGCATGGTCCCCATGGAGATCAAGTTCACCCCCGCCGCCAAGAACGTCCTCCAGGCCT CCCAAGAAGAAGCGCACCAGCTAGGGCATAACTATGTTGGATCTGAACACCTCCTACTTG GGTTGCTCCGTGAGCATGGTGCCGCGCTTGTTGTGCTGAAGAACTTTCAGGCTGATCCCA GCAACATCCGCAGTGAGGTTATCCGAATGATCAGTGACACCTCTGAAGATCATCAACCTG TTAGTGCTGCAGTTGGGGGAGGAAGCAGTACAACTAAGATACCCACACTTTTAGAGTATG GTACTAATCTGACAAAACTAGCAGAGGAGGGGAAGCTGGATCCTGTTGTCGGAAGGCAAA ACCAGGTTGACCGTGTAGTGCAGATTCTCGGCAGGCGGACCAAGAACAACCCCTGCCTGA TTGGAGAGCCTGGAGTAGGGAAAACAGCGATCGCGGAAGGGCTCGCGCAGCGCATTGCTG CAGGAAATGTGCCTGAAACAATCGATGGGAAAACGGTTATCACCCTTGATATGGGTCTAC TTGTTGCTGGTACAAAATACCGTGGTGAGTTTGAGGAGAGATTGAAGAAGCTGATGGACG AAGTGAAGCAGAATGGTGAGATAATTCTCTTCCTTGATGAAGTTCACACCCTGGTGGGTG CTGGAGCAGCTGAAGGGGCCATCGACGCTGCCAACATCCTGAAGCCAGCGCTAGCAAGAG GTGAACTACAGTGTATTGGAGCCACTACCATTGATGAATACAGAAAGCACATTGAGAAAG ACCCAGCACTGGAGAGGCGTTTTCAGCCTGTCAAGGTCCCTGAGCCAACTGTTGATGAGA CCATAGGAATTCTCAAAGGTCTCCGGGAGCGATATGAGATCCATCATAAGGTCCAGTATA CTGATGAGTCGTTGATCGCAGCTGCTCGGCTCTCATACCAGTACATCAGTGATCGTTTCC TCCCGGATAAAGCAATTGACTTGGTTGATGAAGCAGGTTCTCTTGTCAGGCTGCGAAATG CCCAGCTACCTGATGAAGCTAAAGAACTCGAGAAGAAGCTCAAGAAGATCATGGCAGAGA AGAGCGAAGCCATCCGAAGCCAAGACTTCGAGAAGGCGGGAGCGCTTCGCGGCGAGGAGG TGGAGCTCAAGTCGGAGATCATGTCGCTGGTCGACAAGAGCAAGGAGATGAGCAAGGCGG CGGTGGACTCCGGCGAGTCGCCGGGGCCGACGGTGACGGAGGCGGACGTCCAGCACATCG TCTCCAGCTGGACCGGCGTCCCCGTGGAGAAGGTCACCGTCGACGAGTCGAGCCGTCTCC TCGCCATGGAGTCGTCGCTGCACCGGCGCATCGTCGGCCAGGACGAGGCCGTGACGGCGA TCAGCCGCGCCATCCGCCGCGCCCGCGTCGGGCTCCGCGACCCGCGCCGCCCGATCGCGA GCTTCATCTTCGCCGGGCCGACGGGGGTCGGCAAGTCGGAGCTCGCCAAGGCGCTGGCGG CGTACTACTACGGCTCGCCGGAGGCCATGGTGCGGCTCGACATGAGCGAGTTCATGGAGA AGCACACGGTGGCGAAGCTGGTGGGCTCGCCGCCGGGGTACGTCGGCTACGCCGAGGGCG GCCAGCTGACGGAGGCGATCCGGCGGCGCCCCTACGCCGTCGTGCTGTTCGACGAGGTCG AGAAGGCGCACCCCGACGTGTTCAACATGATGCTCCAGATCCTCGACGATGGCCGGCTCA CGGACAGCAAGGGGAGGACGGTGGATTTCAAGAACTCGCTCATCATCATGACATCCAACG TCGGCAGCGGCGTCATCGAGAAGGGCGGGAGGCAGCTCGGGTTCGCCGGCGATGGCAGCG GCGACGGCGGGTACGGGGTGATCAAGAACATGGTGGAGGAGGAGATGAAGCGCTACTTCA GGCCGGAGTTCCTGAACCGGCTGGACGAGATGATCGTGTTCCGGCAGCTGACGAAGCTGG AGGTGAAGGAGATCGCCGGGATCATGCTCGCCGAGGTCACCGGGCGGATCGGCGGGAAGG GGATCGGGCTGCAGGTGACGGAGAGGTTCAAGGAGCTCGTCGTCGAGCAAGGCTTCGACC CGAGCTACGGCGCGCGGCCGCTGCGCCGGGCCATCATGCGGCTGCTGGAGGACACGCTCA CGGACAAGATGCTCGCCGGGGAGATCTGCGCCGGCGACTCGGTGATCGTCGACGCCGACG GTGACGGGAACGTCGTCGTGGTCGGCCGGCGCAGCGCCGGCTTGCCGGACCTGAAATCGC CGGCGTTTACTGTCTAGGATTACTACTACGGCTGCTGCATTTTCAGCTATTACTATCTTT TTGTGTTTGTGTATACATTAGCTAGGGATAAACTGTCATAGTATTTCTTATCTTTTTTTT TGAAAAAAAAAAACCTATTATTAGCATCTTGGTAGAGAGACAGATGGTAGGAATAGCTTA GTTAATCTTACGCACTCAATTCTTTTATGGTTGATGCACTTTAATTCCTTTGTTAGGAAT CTCAAAAGTTATCTTCATATTCTTGTAGTCCCATTTTAGTGCT