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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0260100-00
CDS Infomation

cds chromosome:IRGSP-1.0:11:8677314:8678820:1 gene:Os11g0260100 gene_biotype:protein_coding transcript_biotype:protein_coding description:SAM dependent carboxyl methyltransferase family protein. (Os11t0260100-00)
Sequence

ATGAAGATCAAGCTTGATTTCCACATGATTAAGGGGGATGGTGACTCAAGCTACGCAAAG
AACTCTAGTACCCAGGGAAAAGCCATTCTTTCAACCAAACCAATGGTTGAGAAAGCCACG
AAAGAAATATGCATGGATCTTCAACCTCGGTCAATGGTCGTAGCTGACCTAGGATGCTCC
TCTGGTGCAAACACGCTCCTCTTTATCTCTGAGGTCATTGCTATCATAAGTGAAGAAACC
CCTGCTAACAACAACAATAGGGAGTGCCCCATGGAGGTCCAATTCTTCCTCAATGACCTA
CCCAACAATGATTTGAACCACAATTTCCAGTTGCTAGAGCAATTCAAGCAGTCAATAGTG
CGAGATTGTGCTCGCAGAGGGCTACAACATCCTCCATACTACGTTGCTGGCGTGCCAGGA
TCTTTCTACACCAGGCTCTTCCCTTGCAATAGTGTCCATATCTTCCACTCATCCTTCAGC
CTCATGTGGCTCTCTCAGGGTCGTGTGGAGAAGGAGAAGCTGGACTCTTTCAACCGACCA
ATGTACGGCCCTTCTGTGGATGAGCTGAAGCAGCTGGTACAAGAGAGCCAGTTGTTCGAC
ATCATAGACATCCGGGCCTTTGATTTAACTTTTGATCCCATAGACAAATTGGAGTTGGAA
GAGAGCGCCACCGCTACAACAGGGAGACCATATAGTGTTCATGAGGCTATCGATAACAAC
CACACCACAACTTTAAGAGCGGTGACGGAGACCCTATTGGCAAGCCATTTTGGGGAGTCT
ATAATGGATGATCTCTTCACGCTCTTTGCATGTAATGTCACGCGGCATCTTGAGAGCTGT
GCGTGGGAGGAGAGCAGCATTATGGCCATTTCTGTGTCACTGGACACAAAAGTGCGAGGA
TGA

Peptide Sequence

PEP ID

Os11t0260100-00
PEP Infomation

pep chromosome:IRGSP-1.0:11:8677314:8678820:1 gene:Os11g0260100 transcript:Os11t0260100-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:SAM dependent carboxyl methyltransferase family protein. (Os11t0260100-00)
Sequence

MKIKLDFHMIKGDGDSSYAKNSSTQGKAILSTKPMVEKATKEICMDLQPRSMVVADLGCS
SGANTLLFISEVIAIISEETPANNNNRECPMEVQFFLNDLPNNDLNHNFQLLEQFKQSIV
RDCARRGLQHPPYYVAGVPGSFYTRLFPCNSVHIFHSSFSLMWLSQGRVEKEKLDSFNRP
MYGPSVDELKQLVQESQLFDIIDIRAFDLTFDPIDKLELEESATATTGRPYSVHEAIDNN
HTTTLRAVTETLLASHFGESIMDDLFTLFACNVTRHLESCAWEESSIMAISVSLDTKVRG

Transcript Sequence

Transcript ID

Os11t0260100-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:8677314:8678820:1 gene:Os11g0260100 gene_biotype:protein_coding transcript_biotype:protein_coding description:SAM dependent carboxyl methyltransferase family protein. (Os11t0260100-00)
Sequence

ATGAAGATCAAGCTTGATTTCCACATGATTAAGGGGGATGGTGACTCAAGCTACGCAAAG
AACTCTAGTACCCAGGGAAAAGCCATTCTTTCAACCAAACCAATGGTTGAGAAAGCCACG
AAAGAAATATGCATGGATCTTCAACCTCGGTCAATGGTCGTAGCTGACCTAGGATGCTCC
TCTGGTGCAAACACGCTCCTCTTTATCTCTGAGGTCATTGCTATCATAAGTGAAGAAACC
CCTGCTAACAACAACAATAGGGAGTGCCCCATGGAGGTCCAATTCTTCCTCAATGACCTA
CCCAACAATGATTTGAACCACAATTTCCAGTTGCTAGAGCAATTCAAGCAGTCAATAGTG
CGAGATTGTGCTCGCAGAGGGCTACAACATCCTCCATACTACGTTGCTGGCGTGCCAGGA
TCTTTCTACACCAGGCTCTTCCCTTGCAATAGTGTCCATATCTTCCACTCATCCTTCAGC
CTCATGTGGCTCTCTCAGGGTCGTGTGGAGAAGGAGAAGCTGGACTCTTTCAACCGACCA
ATGTACGGCCCTTCTGTGGATGAGCTGAAGCAGCTGGTACAAGAGAGCCAGTTGTTCGAC
ATCATAGACATCCGGGCCTTTGATTTAACTTTTGATCCCATAGACAAATTGGAGTTGGAA
GAGAGCGCCACCGCTACAACAGGGAGACCATATAGTGTTCATGAGGCTATCGATAACAAC
CACACCACAACTTTAAGAGCGGTGACGGAGACCCTATTGGCAAGCCATTTTGGGGAGTCT
ATAATGGATGATCTCTTCACGCTCTTTGCATGTAATGTCACGCGGCATCTTGAGAGCTGT
GCGTGGGAGGAGAGCAGCATTATGGCCATTTCTGTGTCACTGGACACAAAAGTGCGAGGA
TGA