Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0257700-00
CDS Infomation

cds chromosome:IRGSP-1.0:11:8529786:8531343:1 gene:Os11g0257700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to SAM dependent carboxyl methyltransferase. (Os11t0257700-00)
Sequence

TTTGAGCTGTTGACAAAACAACATTTTACCTGCAGAGGGTTACAACCTCCTCCGTATTAT
GTTGCAGCTATGGCAGGTTCCTTCTACACGAGGCTCTTCCCAAGCAACAGCGTCCATTTC
TTCCATTCCTCCATGAGTGTCATGTGGCTCTCTCAGGTCCCTGAAAATCTCGATGGCAGC
ATGAACAAAGGGAATGTTTACATTGGGGCAACTACACCGCCAATGGTGACAAAGCTCTAC
CAAAATCAGTTTGAGAAGGACTTTTTGCAATTCCTCCGGATGCGATGCAAAGAGATCGTG
CCCAGAGGCCGGATGGTGCTAACTCTTGTTGGGAGGAGGAGCAAAGATGTGTTCGATGCA
GGAAGGACGACCATTGGTTTTGAGTTGCTTTCGCAGGTGTTGCGCACTCTTGTTGCTGAG
GGTCGCGTTGAGAAGGAGAAGCTAGACTCCTTCAACATACCAATTTATTGTGCTTCAGTT
GATGAACTAAAGCAGTTGGTGTGTCATAACGACCTAATTGACATAAGTGACATCCAACTC
TTTGAGATGGATGGAAACTGCATGGATGACCCGGAGCCAGTAGAGGGCCCTGCTGCTGCT
CAGGCCATTGGACAGAGCACATCTGCGACCCTAATTAAGGGCGGCGACAGAGTCCCTTAT
CGCAAGCCATTTCGGGGATTCTATACTCGATGA

Peptide Sequence

PEP ID

Os11t0257700-00
PEP Infomation

pep chromosome:IRGSP-1.0:11:8529786:8531343:1 gene:Os11g0257700 transcript:Os11t0257700-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to SAM dependent carboxyl methyltransferase. (Os11t0257700-00)
Sequence

FELLTKQHFTCRGLQPPPYYVAAMAGSFYTRLFPSNSVHFFHSSMSVMWLSQVPENLDGS
MNKGNVYIGATTPPMVTKLYQNQFEKDFLQFLRMRCKEIVPRGRMVLTLVGRRSKDVFDA
GRTTIGFELLSQVLRTLVAEGRVEKEKLDSFNIPIYCASVDELKQLVCHNDLIDISDIQL
FEMDGNCMDDPEPVEGPAAAQAIGQSTSATLIKGGDRVPYRKPFRGFYTR

Transcript Sequence

Transcript ID

Os11t0257700-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:8529786:8531343:1 gene:Os11g0257700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to SAM dependent carboxyl methyltransferase. (Os11t0257700-00)
Sequence

AGAGAAGAGCTATTCTTACAACCAGGCCAATGGTCGAGAAAGCTGTAAGAGAAATGGGCA
GTGATCTTCATCCTCAATCAATGACCATTGTTGATCTAGGTTGCTCATTCGGTGCCAATA
CACTCCTCTTTGTCTCCGATGTGATCACCACAATATGTGAAAATGGTAACAATGCTATCG
AGGAGAGCGCCATGGAGATCTAGTTCTTCCTCAATGACCTACCTAGCAACGACTTCAACC
ACATATTCCAATCACTAGAGTAGTTTGAGCTGTTGACAAAACAACATTTTACCTGCAGAG
GGTTACAACCTCCTCCGTATTATGTTGCAGCTATGGCAGGTTCCTTCTACACGAGGCTCT
TCCCAAGCAACAGCGTCCATTTCTTCCATTCCTCCATGAGTGTCATGTGGCTCTCTCAGG
TCCCTGAAAATCTCGATGGCAGCATGAACAAAGGGAATGTTTACATTGGGGCAACTACAC
CGCCAATGGTGACAAAGCTCTACCAAAATCAGTTTGAGAAGGACTTTTTGCAATTCCTCC
GGATGCGATGCAAAGAGATCGTGCCCAGAGGCCGGATGGTGCTAACTCTTGTTGGGAGGA
GGAGCAAAGATGTGTTCGATGCAGGAAGGACGACCATTGGTTTTGAGTTGCTTTCGCAGG
TGTTGCGCACTCTTGTTGCTGAGGGTCGCGTTGAGAAGGAGAAGCTAGACTCCTTCAACA
TACCAATTTATTGTGCTTCAGTTGATGAACTAAAGCAGTTGGTGTGTCATAACGACCTAA
TTGACATAAGTGACATCCAACTCTTTGAGATGGATGGAAACTGCATGGATGACCCGGAGC
CAGTAGAGGGCCCTGCTGCTGCTCAGGCCATTGGACAGAGCACATCTGCGACCCTAATTA
AGGGCGGCGACAGAGTCCCTTATCGCAAGCCATTTCGGGGATTCTATACTCGATGA