Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0256100-00
CDS Infomation	cds chromosome:IRGSP-1.0:11:8439729:8441556:-1 gene:Os11g0256100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os11t0256100-00)
Sequence	ATGGCCCCTCCTCCCCTGGCGGCAGCGCCACCGCCACCGCCCGCCGCCGCCCTCGTCCAC CACTACACCCGCCTCCTCTTCGCCGCCGCCTCCGCCTCCGCCGCCGCCTCCCTCCGCGCC CTCCTCCCCATCCACGCCCGCGCCGTCGTGCTCGGCATCTCCGCCAACCCGGCCTTCGCC ACCAGCCTCATCACCGCCGTGGCCCCCGCCTGCCTCGCCTACGCACGCAGGGTGTTCGAC GCCGCGCCCAGCCGGGATGCCTACATGTGGAACACCCTCCTCCGCGCCCATGCCCACTCC CGCGCCCACGCCAGGGACGCCCTCGCGCTCTACGCGCGGATGCGCGCCGCGGGCGTGGCG CCCGACCACTACACGTACCCAATCGTGCTCCCGGCGTGCGCGGCGGCGCGGGCGCCGCGG CTCGGGCGGGCGGCGCACGGGGACGCCGTGCGGTTCGCGCTGGCGCGGGATGGGTTCGTG AGCAGCGCCCTGATCTCGATGTACTCCCAGGAGGGGGAGGTGCGCGACGCGGAGCGCGTG TTCGCGGAGAGGGATGATGCCCGGACGGTCGTCTCGTGGACGGCCATGGTTGCTGGGTAC GCGCAGAACTGCTTCTTCGGCGAGGCAGTCACGTTGTTCAGTGACATGGTTGCTGCGGGC GTGCTTCCAAATGAGATCACCCTGATCAGTTTCCTGCCCTGCTTACGGGGGCAAGAATGG CTGCCTGTTGGGGAGATGGTTCATGGATTCGTCGTCAAACTGGGATTCGATGCAAACGTT CCCATGGTGAATGCGCTAATTACGATGTATGGAAGGTGCGGAAGTGCTCCCGTGGCAAGA GTTCTGTTCAATGGGATGAGTAGCCGCACTCTGGTTTCTTGGAATACTATGGTTGCGATG TATGAGCAACACGGTGATGGGGTTCAGGCAATCAAGTTTTTCCGCAGGATGCTTACCGAG AAGGTGGGGTTTGACTGTGTGACTTTGGTGAGCGTGTTGTCTGCTTGTGCGCGCTCGGGA GCCCTTGGTACCGGGAAGTGGGTGCATGAGCTAGCCAGGAGTCATGGGCTTGACACTGAT GCAAGGATTGGCAATGTTCTTGTAGACATGTATGCAAAGTGTGGTGAGATTGCTTATGCA AAGGAGGTTTTTCATTCACATGGTTTGCGTGGTCACAGTGTTGTGTCCTGGAGTGCCATG ATCAATGCATATGCCAACCATGGGGAGGCAGAAGAGGCTCTCAAGCTCTTCTCCCTGATG AGGAATGAAGGGGTGAGGCCTAATTCATTCACATTTACAGCGGTTTTAATGGCGTGTTGC CACTCAGGCCTTGTCGATGAAGGACTGAAGCATTTCAACAGCATAGCCACAGACTACCAA ATGTCACCAACACTTGAGCACTATGCTTGCATGGTTGACATGCTAGGACGTGCTGGTAGA CTTGTTGAAGCATATGGAATCATTAGGGGAATGCCGATTCGGCCTGACAAGTGTGTGTGG GGTGCCTTCCTTGGTGGTTGTAGGCTTCATGGAATGGTGGAGCTAGCTGAATATGTTGCA AAGGAGCTTTTCGACTCAGGATCTAATGATGTAACATTTTATGTTCTGATGGCAAACATG TACTTTGAAGCTGGAATGCTGGAAGATGCTGAGAGGATAAGAGGAGTCATGAAAGAGATG GAGCTAAAGAAGACAGCTGGGCATAGCTTAGTTTGTACTGATAGAGAAAGAATAGCTGTC GTAAGGTAG

Peptide Sequence

PEP ID	Os11t0256100-00
PEP Infomation	pep chromosome:IRGSP-1.0:11:8439729:8441556:-1 gene:Os11g0256100 transcript:Os11t0256100-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os11t0256100-00)
Sequence	MAPPPLAAAPPPPPAAALVHHYTRLLFAAASASAAASLRALLPIHARAVVLGISANPAFA TSLITAVAPACLAYARRVFDAAPSRDAYMWNTLLRAHAHSRAHARDALALYARMRAAGVA PDHYTYPIVLPACAAARAPRLGRAAHGDAVRFALARDGFVSSALISMYSQEGEVRDAERV FAERDDARTVVSWTAMVAGYAQNCFFGEAVTLFSDMVAAGVLPNEITLISFLPCLRGQEW LPVGEMVHGFVVKLGFDANVPMVNALITMYGRCGSAPVARVLFNGMSSRTLVSWNTMVAM YEQHGDGVQAIKFFRRMLTEKVGFDCVTLVSVLSACARSGALGTGKWVHELARSHGLDTD ARIGNVLVDMYAKCGEIAYAKEVFHSHGLRGHSVVSWSAMINAYANHGEAEEALKLFSLM RNEGVRPNSFTFTAVLMACCHSGLVDEGLKHFNSIATDYQMSPTLEHYACMVDMLGRAGR LVEAYGIIRGMPIRPDKCVWGAFLGGCRLHGMVELAEYVAKELFDSGSNDVTFYVLMANM YFEAGMLEDAERIRGVMKEMELKKTAGHSLVCTDRERIAVVR

Transcript Sequence

Transcript ID	Os11t0256100-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:8439729:8441556:-1 gene:Os11g0256100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os11t0256100-00)
Sequence	ATGGCCCCTCCTCCCCTGGCGGCAGCGCCACCGCCACCGCCCGCCGCCGCCCTCGTCCAC CACTACACCCGCCTCCTCTTCGCCGCCGCCTCCGCCTCCGCCGCCGCCTCCCTCCGCGCC CTCCTCCCCATCCACGCCCGCGCCGTCGTGCTCGGCATCTCCGCCAACCCGGCCTTCGCC ACCAGCCTCATCACCGCCGTGGCCCCCGCCTGCCTCGCCTACGCACGCAGGGTGTTCGAC GCCGCGCCCAGCCGGGATGCCTACATGTGGAACACCCTCCTCCGCGCCCATGCCCACTCC CGCGCCCACGCCAGGGACGCCCTCGCGCTCTACGCGCGGATGCGCGCCGCGGGCGTGGCG CCCGACCACTACACGTACCCAATCGTGCTCCCGGCGTGCGCGGCGGCGCGGGCGCCGCGG CTCGGGCGGGCGGCGCACGGGGACGCCGTGCGGTTCGCGCTGGCGCGGGATGGGTTCGTG AGCAGCGCCCTGATCTCGATGTACTCCCAGGAGGGGGAGGTGCGCGACGCGGAGCGCGTG TTCGCGGAGAGGGATGATGCCCGGACGGTCGTCTCGTGGACGGCCATGGTTGCTGGGTAC GCGCAGAACTGCTTCTTCGGCGAGGCAGTCACGTTGTTCAGTGACATGGTTGCTGCGGGC GTGCTTCCAAATGAGATCACCCTGATCAGTTTCCTGCCCTGCTTACGGGGGCAAGAATGG CTGCCTGTTGGGGAGATGGTTCATGGATTCGTCGTCAAACTGGGATTCGATGCAAACGTT CCCATGGTGAATGCGCTAATTACGATGTATGGAAGGTGCGGAAGTGCTCCCGTGGCAAGA GTTCTGTTCAATGGGATGAGTAGCCGCACTCTGGTTTCTTGGAATACTATGGTTGCGATG TATGAGCAACACGGTGATGGGGTTCAGGCAATCAAGTTTTTCCGCAGGATGCTTACCGAG AAGGTGGGGTTTGACTGTGTGACTTTGGTGAGCGTGTTGTCTGCTTGTGCGCGCTCGGGA GCCCTTGGTACCGGGAAGTGGGTGCATGAGCTAGCCAGGAGTCATGGGCTTGACACTGAT GCAAGGATTGGCAATGTTCTTGTAGACATGTATGCAAAGTGTGGTGAGATTGCTTATGCA AAGGAGGTTTTTCATTCACATGGTTTGCGTGGTCACAGTGTTGTGTCCTGGAGTGCCATG ATCAATGCATATGCCAACCATGGGGAGGCAGAAGAGGCTCTCAAGCTCTTCTCCCTGATG AGGAATGAAGGGGTGAGGCCTAATTCATTCACATTTACAGCGGTTTTAATGGCGTGTTGC CACTCAGGCCTTGTCGATGAAGGACTGAAGCATTTCAACAGCATAGCCACAGACTACCAA ATGTCACCAACACTTGAGCACTATGCTTGCATGGTTGACATGCTAGGACGTGCTGGTAGA CTTGTTGAAGCATATGGAATCATTAGGGGAATGCCGATTCGGCCTGACAAGTGTGTGTGG GGTGCCTTCCTTGGTGGTTGTAGGCTTCATGGAATGGTGGAGCTAGCTGAATATGTTGCA AAGGAGCTTTTCGACTCAGGATCTAATGATGTAACATTTTATGTTCTGATGGCAAACATG TACTTTGAAGCTGGAATGCTGGAAGATGCTGAGAGGATAAGAGGAGTCATGAAAGAGATG GAGCTAAAGAAGACAGCTGGGCATAGCTTAGTTTGTACTGATAGAGAAAGAATAGCTGTC GTAAGGTAGCAGACTAGTAAAATTGTACTACTGATGCTAATTAGCTTATCTGTTGCTAGC TTCGTATGTAGATTAATTCTTTGATAGT