Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0252400-03
CDS Infomation

cds chromosome:IRGSP-1.0:11:8198320:8201115:-1 gene:Os11g0252400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ankyrin repeat containing protein. (Os11t0252400-01);Hypothetical conserved gene. (Os11t0252400-02);Hypothetical conserved gene. (Os11t0252400-03)
Sequence

GCCACATCAATGAAGGAGATGGCTGCACAGGATCCAAGCCTGCTGCTTGGAACAACTCCT
CAAGGGAACACCTGCCTCCACATCTCCTCCATCCATGGCCATGAGGGATTTTGCAAGGAT
GTGCTGACGCTAAACAATTCTCTTCTCACTGTCGCAAACATGGATGGTGAGACACCACTG
CTCACTGCCGTGACAAATGGACACATGTCTTTGGCCTCTATTCTACTTGAATGCTGCTGC
ACACTAGGGTTCAGTGAGGCAATCTTGCAACAAGACAGAAATGGTTGTAATGCACTGCAC
CATGCCATTCATTGTGGTCACAAGGACCTTGCACTGGAATTGATATTAAAAGAGCCTGCC
CTATCAAAAGCTGTGAACAAATACAGTGAGTCACCAATGTTCATCGCGGTAATGAGAGAT
TTTACAGATGTTTCTGAGAAACTGTTGGGAATTCCTGGATCTAGCCATGTTGGAACATAT
GGCCACAATGCCTTGCATGCTACTGTGAGAAATGGAAATGCAGTTATGGCTAAAAAAATT
TTGGAGGGTCGTCCTTGGCTGGGGAAAGAACGAACCAGAGAGAGGAAGACCCCAATCCTG
ATGACGGTAATTTGGGACAAGATAGACGTGCTTCGTGTGTTGTTGGAACATGATGTGCTT
TTAGGGTATGAATGCTATGATGATGGTGGTAATCTGAGCCCTCTTCTTGTTGCTGCTGCA
TATCGAGGTCATGTTGATGTTGCTCAAGAGCTTCTTAACCACTGTCCAGATGCTCCCTAT
TGCGACAGAAATGGTTGGACATGCCTTCATGAAGCTGTAAAGGAAGGTCAGACAGAGTTT
GTGGAATTTATCCTAAGGACACCACAACTTCGTAAGCTCATCAACATGCGAAATAACAAG
GACGGACAAACTGCTCTGCATCAAGCTGTCCGGATGTGCAATCCTAAAATTGTTGCCTCG
TTGTTGTCTCATAAAGACACAGACTTCACACTGAATGATCACAAAACTGGCCAGTCAGTA
ATTTGGCAATTATGTTTGGGTTCAGAGCGTGCCAAGACTTTAAACTGGAATGAAGTGTCC
ATGCTTATGACTAAAGCTGATCCTGAAGCTGCAACCACGCTTCACCGTCAGTTCGCAAGG
AAACGACTAACTGATGAATTAGCAAGGAATGTTAAGTCACTCACTCAAACATACACAAGC
AACACTTCGCTAGTGGCTATTCTCATGGCGACGATAACCTTTGCCGCAGCCTTCACCCTG
CCTGGGGGATACAGCAACGATTCTGGAAGCGAGGGACTTCCTGTCATGGCAAAGAAGTTA
GCGTTTCAAGCATTCTTGATCTCTGACACCGTAGCAATGTGCTCCTCGCTTGCCGTCGCA
TTCATATGCATCCTAGCAAGGTGGGAGGATCTTGAATTCTTGCTTTACTACAGATCCTTT
ACGAAGAAGCTTATGTGGTTTGCATACATGGCGACCACTATAGCGTTTGCAACGGGTTTA
TACACCGTGTTGGCCCCACGAATGCTGTGGTTAGCTGTTGGAATTTGTTTCCTTTCGGTT
TTACTGCCCATTCTCACTAAGCTGCTAGGTGAGTGGCCTGTCGTGAAGCTCAGATTTCGT
TTGGGTAAGACTTTCAAGACTGATCTCCTTGATATGGTATGA

Peptide Sequence

PEP ID

Os11t0252400-03
PEP Infomation

pep chromosome:IRGSP-1.0:11:8198320:8201115:-1 gene:Os11g0252400 transcript:Os11t0252400-03 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ankyrin repeat containing protein. (Os11t0252400-01);Hypothetical conserved gene. (Os11t0252400-02);Hypothetical conserved gene. (Os11t0252400-03)
Sequence

ATSMKEMAAQDPSLLLGTTPQGNTCLHISSIHGHEGFCKDVLTLNNSLLTVANMDGETPL
LTAVTNGHMSLASILLECCCTLGFSEAILQQDRNGCNALHHAIHCGHKDLALELILKEPA
LSKAVNKYSESPMFIAVMRDFTDVSEKLLGIPGSSHVGTYGHNALHATVRNGNAVMAKKI
LEGRPWLGKERTRERKTPILMTVIWDKIDVLRVLLEHDVLLGYECYDDGGNLSPLLVAAA
YRGHVDVAQELLNHCPDAPYCDRNGWTCLHEAVKEGQTEFVEFILRTPQLRKLINMRNNK
DGQTALHQAVRMCNPKIVASLLSHKDTDFTLNDHKTGQSVIWQLCLGSERAKTLNWNEVS
MLMTKADPEAATTLHRQFARKRLTDELARNVKSLTQTYTSNTSLVAILMATITFAAAFTL
PGGYSNDSGSEGLPVMAKKLAFQAFLISDTVAMCSSLAVAFICILARWEDLEFLLYYRSF
TKKLMWFAYMATTIAFATGLYTVLAPRMLWLAVGICFLSVLLPILTKLLGEWPVVKLRFR
LGKTFKTDLLDMV

Transcript Sequence

Transcript ID

Os11t0252400-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:8198320:8201115:-1 gene:Os11g0252400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ankyrin repeat containing protein. (Os11t0252400-01);Hypothetical conserved gene. (Os11t0252400-02);Hypothetical conserved gene. (Os11t0252400-03)
Sequence

GTGCCACATCAATGAAGGAGATGGCTGCACAGGATCCAAGCCTGCTGCTTGGAACAACTC
CTCAAGGGAACACCTGCCTCCACATCTCCTCCATCCATGGCCATGAGGGATTTTGCAAGG
ATGTGCTGACGCTAAACAATTCTCTTCTCACTGTCGCAAACATGGATGGTGAGACACCAC
TGCTCACTGCCGTGACAAATGGACACATGTCTTTGGCCTCTATTCTACTTGAATGCTGCT
GCACACTAGGGTTCAGTGAGGCAATCTTGCAACAAGACAGAAATGGTTGTAATGCACTGC
ACCATGCCATTCATTGTGGTCACAAGGACCTTGCACTGGAATTGATATTAAAAGAGCCTG
CCCTATCAAAAGCTGTGAACAAATACAGTGAGTCACCAATGTTCATCGCGGTAATGAGAG
ATTTTACAGATGTTTCTGAGAAACTGTTGGGAATTCCTGGATCTAGCCATGTTGGAACAT
ATGGCCACAATGCCTTGCATGCTACTGTGAGAAATGGAAATGCAGTTATGGCTAAAAAAA
TTTTGGAGGGTCGTCCTTGGCTGGGGAAAGAACGAACCAGAGAGAGGAAGACCCCAATCC
TGATGACGGTAATTTGGGACAAGATAGACGTGCTTCGTGTGTTGTTGGAACATGATGTGC
TTTTAGGGTATGAATGCTATGATGATGGTGGTAATCTGAGCCCTCTTCTTGTTGCTGCTG
CATATCGAGGTCATGTTGATGTTGCTCAAGAGCTTCTTAACCACTGTCCAGATGCTCCCT
ATTGCGACAGAAATGGTTGGACATGCCTTCATGAAGCTGTAAAGGAAGGTCAGACAGAGT
TTGTGGAATTTATCCTAAGGACACCACAACTTCGTAAGCTCATCAACATGCGAAATAACA
AGGACGGACAAACTGCTCTGCATCAAGCTGTCCGGATGTGCAATCCTAAAATTGTTGCCT
CGTTGTTGTCTCATAAAGACACAGACTTCACACTGAATGATCACAAAACTGGCCAGTCAG
TAATTTGGCAATTATGTTTGGGTTCAGAGCGTGCCAAGACTTTAAACTGGAATGAAGTGT
CCATGCTTATGACTAAAGCTGATCCTGAAGCTGCAACCACGCTTCACCGTCAGTTCGCAA
GGAAACGACTAACTGATGAATTAGCAAGGAATGTTAAGTCACTCACTCAAACATACACAA
GCAACACTTCGCTAGTGGCTATTCTCATGGCGACGATAACCTTTGCCGCAGCCTTCACCC
TGCCTGGGGGATACAGCAACGATTCTGGAAGCGAGGGACTTCCTGTCATGGCAAAGAAGT
TAGCGTTTCAAGCATTCTTGATCTCTGACACCGTAGCAATGTGCTCCTCGCTTGCCGTCG
CATTCATATGCATCCTAGCAAGGTGGGAGGATCTTGAATTCTTGCTTTACTACAGATCCT
TTACGAAGAAGCTTATGTGGTTTGCATACATGGCGACCACTATAGCGTTTGCAACGGGTT
TATACACCGTGTTGGCCCCACGAATGCTGTGGTTAGCTGTTGGAATTTGTTTCCTTTCGG
TTTTACTGCCCATTCTCACTAAGCTGCTAGGTGAGTGGCCTGTCGTGAAGCTCAGATTTC
GTTTGGGTAAGACTTTCAAGACTGATCTCCTTGATATGGTATGACGTCATCAAATTTATA
TTATTTGTTCTGCTTTCCAACACTACATATAAGTTCATGCAAAATGTATGTTGTAATATA
TACATTTTATTTTGGTGATATGTCTAGAAGATATCATGGAGAGTTGGAGACGATTATACC
AGAGACAATATTTATGAGTTACTCCCTCTATCTCAAAATATAAGACATAATTATTTTTT